Experiment: A22 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2853 and Shewana3_2854 are separated by 255 nucleotides Shewana3_2854 and Shewana3_2855 overlap by 4 nucleotides Shewana3_2855 and Shewana3_2856 are separated by 132 nucleotides Shewana3_2856 and Shewana3_2857 are separated by 4 nucleotides
Shewana3_2853: Shewana3_2853 - hypothetical protein (RefSeq), at 3,414,062 to 3,414,871
_2853
Shewana3_2854: Shewana3_2854 - hypothetical protein (RefSeq), at 3,415,127 to 3,415,369
_2854
Shewana3_2855: Shewana3_2855 - hypothetical protein (RefSeq), at 3,415,366 to 3,415,866
_2855
Shewana3_2856: Shewana3_2856 - cyclic nucleotide-binding protein (RefSeq), at 3,415,999 to 3,416,607
_2856
Shewana3_2857: Shewana3_2857 - fumarylacetoacetate (FAA) hydrolase (RefSeq), at 3,416,612 to 3,417,238
_2857
Position (kb)
3415
3416 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3414.372 kb on - strand, within Shewana3_2853 at 3414.451 kb on - strand, within Shewana3_2853 at 3414.660 kb on - strand, within Shewana3_2853 at 3414.737 kb on + strand, within Shewana3_2853 at 3414.826 kb on + strand at 3414.845 kb on - strand at 3414.937 kb on - strand at 3414.962 kb on + strand at 3415.157 kb on + strand, within Shewana3_2854 at 3415.324 kb on - strand, within Shewana3_2854 at 3415.324 kb on - strand, within Shewana3_2854 at 3415.479 kb on + strand, within Shewana3_2855 at 3415.849 kb on - strand at 3415.859 kb on - strand at 3415.875 kb on + strand at 3416.146 kb on - strand, within Shewana3_2856 at 3416.149 kb on - strand, within Shewana3_2856 at 3416.284 kb on - strand, within Shewana3_2856 at 3416.381 kb on + strand, within Shewana3_2856 at 3416.449 kb on - strand, within Shewana3_2856 at 3416.669 kb on + strand at 3416.716 kb on + strand, within Shewana3_2857 at 3416.828 kb on + strand, within Shewana3_2857
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.008 mg/ml remove 3,414,372 - Shewana3_2853 0.38 +0.2 3,414,451 - Shewana3_2853 0.48 +0.1 3,414,660 - Shewana3_2853 0.74 +0.2 3,414,737 + Shewana3_2853 0.83 +0.7 3,414,826 + -0.3 3,414,845 - +0.2 3,414,937 - -0.2 3,414,962 + +0.7 3,415,157 + Shewana3_2854 0.12 -1.2 3,415,324 - Shewana3_2854 0.81 +1.0 3,415,324 - Shewana3_2854 0.81 +0.7 3,415,479 + Shewana3_2855 0.23 +1.7 3,415,849 - +0.1 3,415,859 - +1.7 3,415,875 + +0.1 3,416,146 - Shewana3_2856 0.24 +0.7 3,416,149 - Shewana3_2856 0.25 +0.7 3,416,284 - Shewana3_2856 0.47 -2.8 3,416,381 + Shewana3_2856 0.63 -2.1 3,416,449 - Shewana3_2856 0.74 -0.1 3,416,669 + -0.3 3,416,716 + Shewana3_2857 0.17 -1.3 3,416,828 + Shewana3_2857 0.34 +0.7
Or see this region's nucleotide sequence