Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2853

Experiment: A22 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2851 and Shewana3_2852 are separated by 164 nucleotidesShewana3_2852 and Shewana3_2853 are separated by 124 nucleotidesShewana3_2853 and Shewana3_2854 are separated by 255 nucleotidesShewana3_2854 and Shewana3_2855 overlap by 4 nucleotides Shewana3_2851: Shewana3_2851 - transport-associated (RefSeq), at 3,412,814 to 3,413,362 _2851 Shewana3_2852: Shewana3_2852 - hypothetical protein (RefSeq), at 3,413,527 to 3,413,937 _2852 Shewana3_2853: Shewana3_2853 - hypothetical protein (RefSeq), at 3,414,062 to 3,414,871 _2853 Shewana3_2854: Shewana3_2854 - hypothetical protein (RefSeq), at 3,415,127 to 3,415,369 _2854 Shewana3_2855: Shewana3_2855 - hypothetical protein (RefSeq), at 3,415,366 to 3,415,866 _2855 Position (kb) 3414 3415Strain fitness (log2 ratio) -1 0 1 2at 3413.249 kb on + strand, within Shewana3_2851at 3413.299 kb on - strand, within Shewana3_2851at 3413.373 kb on - strandat 3413.650 kb on - strand, within Shewana3_2852at 3413.657 kb on - strand, within Shewana3_2852at 3413.659 kb on + strand, within Shewana3_2852at 3413.694 kb on + strand, within Shewana3_2852at 3413.863 kb on + strand, within Shewana3_2852at 3413.983 kb on - strandat 3414.053 kb on + strandat 3414.287 kb on + strand, within Shewana3_2853at 3414.358 kb on - strand, within Shewana3_2853at 3414.372 kb on - strand, within Shewana3_2853at 3414.451 kb on - strand, within Shewana3_2853at 3414.660 kb on - strand, within Shewana3_2853at 3414.737 kb on + strand, within Shewana3_2853at 3414.826 kb on + strandat 3414.845 kb on - strandat 3414.937 kb on - strandat 3414.962 kb on + strandat 3415.157 kb on + strand, within Shewana3_2854at 3415.324 kb on - strand, within Shewana3_2854at 3415.324 kb on - strand, within Shewana3_2854at 3415.479 kb on + strand, within Shewana3_2855at 3415.849 kb on - strandat 3415.859 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.008 mg/ml
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3,413,249 + Shewana3_2851 0.79 +1.8
3,413,299 - Shewana3_2851 0.88 -0.5
3,413,373 - -0.3
3,413,650 - Shewana3_2852 0.30 -0.7
3,413,657 - Shewana3_2852 0.32 -0.9
3,413,659 + Shewana3_2852 0.32 -0.3
3,413,694 + Shewana3_2852 0.41 -0.3
3,413,863 + Shewana3_2852 0.82 -0.1
3,413,983 - -0.6
3,414,053 + +0.7
3,414,287 + Shewana3_2853 0.28 -0.3
3,414,358 - Shewana3_2853 0.37 +0.8
3,414,372 - Shewana3_2853 0.38 +0.2
3,414,451 - Shewana3_2853 0.48 +0.1
3,414,660 - Shewana3_2853 0.74 +0.2
3,414,737 + Shewana3_2853 0.83 +0.7
3,414,826 + -0.3
3,414,845 - +0.2
3,414,937 - -0.2
3,414,962 + +0.7
3,415,157 + Shewana3_2854 0.12 -1.2
3,415,324 - Shewana3_2854 0.81 +1.0
3,415,324 - Shewana3_2854 0.81 +0.7
3,415,479 + Shewana3_2855 0.23 +1.7
3,415,849 - +0.1
3,415,859 - +1.7

Or see this region's nucleotide sequence