Experiment: A22 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2851 and Shewana3_2852 are separated by 164 nucleotides Shewana3_2852 and Shewana3_2853 are separated by 124 nucleotides Shewana3_2853 and Shewana3_2854 are separated by 255 nucleotides Shewana3_2854 and Shewana3_2855 overlap by 4 nucleotides
Shewana3_2851: Shewana3_2851 - transport-associated (RefSeq), at 3,412,814 to 3,413,362
_2851
Shewana3_2852: Shewana3_2852 - hypothetical protein (RefSeq), at 3,413,527 to 3,413,937
_2852
Shewana3_2853: Shewana3_2853 - hypothetical protein (RefSeq), at 3,414,062 to 3,414,871
_2853
Shewana3_2854: Shewana3_2854 - hypothetical protein (RefSeq), at 3,415,127 to 3,415,369
_2854
Shewana3_2855: Shewana3_2855 - hypothetical protein (RefSeq), at 3,415,366 to 3,415,866
_2855
Position (kb)
3414
3415 Strain fitness (log2 ratio)
-1
0
1
2 at 3413.249 kb on + strand, within Shewana3_2851 at 3413.299 kb on - strand, within Shewana3_2851 at 3413.373 kb on - strand at 3413.650 kb on - strand, within Shewana3_2852 at 3413.657 kb on - strand, within Shewana3_2852 at 3413.659 kb on + strand, within Shewana3_2852 at 3413.694 kb on + strand, within Shewana3_2852 at 3413.863 kb on + strand, within Shewana3_2852 at 3413.983 kb on - strand at 3414.053 kb on + strand at 3414.287 kb on + strand, within Shewana3_2853 at 3414.358 kb on - strand, within Shewana3_2853 at 3414.372 kb on - strand, within Shewana3_2853 at 3414.451 kb on - strand, within Shewana3_2853 at 3414.660 kb on - strand, within Shewana3_2853 at 3414.737 kb on + strand, within Shewana3_2853 at 3414.826 kb on + strand at 3414.845 kb on - strand at 3414.937 kb on - strand at 3414.962 kb on + strand at 3415.157 kb on + strand, within Shewana3_2854 at 3415.324 kb on - strand, within Shewana3_2854 at 3415.324 kb on - strand, within Shewana3_2854 at 3415.479 kb on + strand, within Shewana3_2855 at 3415.849 kb on - strand at 3415.859 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.008 mg/ml remove 3,413,249 + Shewana3_2851 0.79 +1.8 3,413,299 - Shewana3_2851 0.88 -0.5 3,413,373 - -0.3 3,413,650 - Shewana3_2852 0.30 -0.7 3,413,657 - Shewana3_2852 0.32 -0.9 3,413,659 + Shewana3_2852 0.32 -0.3 3,413,694 + Shewana3_2852 0.41 -0.3 3,413,863 + Shewana3_2852 0.82 -0.1 3,413,983 - -0.6 3,414,053 + +0.7 3,414,287 + Shewana3_2853 0.28 -0.3 3,414,358 - Shewana3_2853 0.37 +0.8 3,414,372 - Shewana3_2853 0.38 +0.2 3,414,451 - Shewana3_2853 0.48 +0.1 3,414,660 - Shewana3_2853 0.74 +0.2 3,414,737 + Shewana3_2853 0.83 +0.7 3,414,826 + -0.3 3,414,845 - +0.2 3,414,937 - -0.2 3,414,962 + +0.7 3,415,157 + Shewana3_2854 0.12 -1.2 3,415,324 - Shewana3_2854 0.81 +1.0 3,415,324 - Shewana3_2854 0.81 +0.7 3,415,479 + Shewana3_2855 0.23 +1.7 3,415,849 - +0.1 3,415,859 - +1.7
Or see this region's nucleotide sequence