Experiment: A22 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2766 and Shewana3_2767 are separated by 100 nucleotides Shewana3_2767 and Shewana3_2768 overlap by 1 nucleotides Shewana3_2768 and Shewana3_2769 are separated by 64 nucleotides
Shewana3_2766: Shewana3_2766 - 3-hydroxyisobutyrate dehydrogenase (RefSeq), at 3,304,349 to 3,305,251
_2766
Shewana3_2767: Shewana3_2767 - enoyl-CoA hydratase/isomerase (RefSeq), at 3,305,352 to 3,306,503
_2767
Shewana3_2768: Shewana3_2768 - enoyl-CoA hydratase (RefSeq), at 3,306,503 to 3,307,276
_2768
Shewana3_2769: Shewana3_2769 - Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) (from data) , at 3,307,341 to 3,308,498
_2769
Position (kb)
3305
3306
3307 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3304.841 kb on + strand, within Shewana3_2766 at 3304.849 kb on - strand, within Shewana3_2766 at 3304.907 kb on + strand, within Shewana3_2766 at 3304.908 kb on + strand, within Shewana3_2766 at 3304.980 kb on - strand, within Shewana3_2766 at 3305.067 kb on - strand, within Shewana3_2766 at 3305.110 kb on + strand, within Shewana3_2766 at 3305.143 kb on - strand, within Shewana3_2766 at 3305.247 kb on - strand at 3305.416 kb on - strand at 3305.471 kb on - strand, within Shewana3_2767 at 3305.510 kb on + strand, within Shewana3_2767 at 3305.675 kb on - strand, within Shewana3_2767 at 3305.704 kb on - strand, within Shewana3_2767 at 3305.873 kb on - strand, within Shewana3_2767 at 3305.978 kb on + strand, within Shewana3_2767 at 3305.986 kb on - strand, within Shewana3_2767 at 3306.124 kb on + strand, within Shewana3_2767 at 3306.124 kb on + strand, within Shewana3_2767 at 3306.299 kb on + strand, within Shewana3_2767 at 3306.522 kb on + strand at 3306.560 kb on - strand at 3306.785 kb on - strand, within Shewana3_2768 at 3306.800 kb on - strand, within Shewana3_2768 at 3306.826 kb on - strand, within Shewana3_2768 at 3306.837 kb on - strand, within Shewana3_2768 at 3306.874 kb on - strand, within Shewana3_2768 at 3306.879 kb on - strand, within Shewana3_2768 at 3306.882 kb on + strand, within Shewana3_2768 at 3306.951 kb on - strand, within Shewana3_2768 at 3307.167 kb on + strand, within Shewana3_2768 at 3307.176 kb on - strand, within Shewana3_2768 at 3307.208 kb on - strand at 3307.256 kb on + strand at 3307.320 kb on + strand at 3307.458 kb on + strand, within Shewana3_2769
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.008 mg/ml remove 3,304,841 + Shewana3_2766 0.54 +1.7 3,304,849 - Shewana3_2766 0.55 -0.3 3,304,907 + Shewana3_2766 0.62 -1.3 3,304,908 + Shewana3_2766 0.62 -0.9 3,304,980 - Shewana3_2766 0.70 -0.8 3,305,067 - Shewana3_2766 0.80 +0.0 3,305,110 + Shewana3_2766 0.84 +0.7 3,305,143 - Shewana3_2766 0.88 +1.7 3,305,247 - +0.4 3,305,416 - -0.3 3,305,471 - Shewana3_2767 0.10 +0.9 3,305,510 + Shewana3_2767 0.14 +0.7 3,305,675 - Shewana3_2767 0.28 -0.1 3,305,704 - Shewana3_2767 0.31 -0.4 3,305,873 - Shewana3_2767 0.45 -0.7 3,305,978 + Shewana3_2767 0.54 -1.2 3,305,986 - Shewana3_2767 0.55 +0.0 3,306,124 + Shewana3_2767 0.67 -2.1 3,306,124 + Shewana3_2767 0.67 +0.7 3,306,299 + Shewana3_2767 0.82 +0.7 3,306,522 + +0.7 3,306,560 - -0.9 3,306,785 - Shewana3_2768 0.36 +1.7 3,306,800 - Shewana3_2768 0.38 -0.1 3,306,826 - Shewana3_2768 0.42 +0.8 3,306,837 - Shewana3_2768 0.43 -0.5 3,306,874 - Shewana3_2768 0.48 -0.5 3,306,879 - Shewana3_2768 0.49 +0.6 3,306,882 + Shewana3_2768 0.49 +2.2 3,306,951 - Shewana3_2768 0.58 +0.2 3,307,167 + Shewana3_2768 0.86 +0.7 3,307,176 - Shewana3_2768 0.87 -0.5 3,307,208 - +0.6 3,307,256 + +2.2 3,307,320 + +1.7 3,307,458 + Shewana3_2769 0.10 +1.7
Or see this region's nucleotide sequence