Experiment: A22 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2750 and Shewana3_2751 overlap by 1 nucleotides Shewana3_2751 and Shewana3_2752 are separated by 175 nucleotides
Shewana3_2750: Shewana3_2750 - secretion protein HlyD family protein (RefSeq), at 3,281,818 to 3,282,831
_2750
Shewana3_2751: Shewana3_2751 - TetR family transcriptional regulator (RefSeq), at 3,282,831 to 3,283,529
_2751
Shewana3_2752: Shewana3_2752 - hypothetical protein (RefSeq), at 3,283,705 to 3,284,073
_2752
Position (kb)
3282
3283
3284 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3281.840 kb on - strand at 3282.148 kb on + strand, within Shewana3_2750 at 3282.247 kb on - strand, within Shewana3_2750 at 3282.285 kb on + strand, within Shewana3_2750 at 3282.285 kb on + strand, within Shewana3_2750 at 3282.285 kb on + strand, within Shewana3_2750 at 3282.292 kb on + strand, within Shewana3_2750 at 3282.293 kb on - strand, within Shewana3_2750 at 3282.293 kb on - strand, within Shewana3_2750 at 3282.293 kb on - strand, within Shewana3_2750 at 3282.305 kb on - strand, within Shewana3_2750 at 3282.372 kb on - strand, within Shewana3_2750 at 3282.442 kb on + strand, within Shewana3_2750 at 3282.511 kb on - strand, within Shewana3_2750 at 3282.665 kb on - strand, within Shewana3_2750 at 3282.665 kb on - strand, within Shewana3_2750 at 3282.837 kb on + strand at 3282.846 kb on - strand at 3282.895 kb on - strand at 3283.200 kb on - strand, within Shewana3_2751 at 3283.265 kb on + strand, within Shewana3_2751 at 3283.308 kb on - strand, within Shewana3_2751 at 3283.441 kb on - strand, within Shewana3_2751 at 3283.653 kb on - strand at 3283.812 kb on - strand, within Shewana3_2752 at 3283.912 kb on + strand, within Shewana3_2752 at 3283.914 kb on - strand, within Shewana3_2752 at 3284.358 kb on + strand at 3284.384 kb on - strand at 3284.489 kb on + strand at 3284.489 kb on + strand at 3284.497 kb on - strand at 3284.519 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.008 mg/ml remove 3,281,840 - +0.3 3,282,148 + Shewana3_2750 0.33 -0.2 3,282,247 - Shewana3_2750 0.42 -0.2 3,282,285 + Shewana3_2750 0.46 +0.7 3,282,285 + Shewana3_2750 0.46 -1.2 3,282,285 + Shewana3_2750 0.46 -0.6 3,282,292 + Shewana3_2750 0.47 -0.9 3,282,293 - Shewana3_2750 0.47 -0.3 3,282,293 - Shewana3_2750 0.47 -0.3 3,282,293 - Shewana3_2750 0.47 -0.3 3,282,305 - Shewana3_2750 0.48 +0.7 3,282,372 - Shewana3_2750 0.55 +0.4 3,282,442 + Shewana3_2750 0.62 +0.1 3,282,511 - Shewana3_2750 0.68 -0.1 3,282,665 - Shewana3_2750 0.84 +0.7 3,282,665 - Shewana3_2750 0.84 +2.3 3,282,837 + +0.7 3,282,846 - +0.4 3,282,895 - +0.5 3,283,200 - Shewana3_2751 0.53 +0.4 3,283,265 + Shewana3_2751 0.62 -1.5 3,283,308 - Shewana3_2751 0.68 +0.5 3,283,441 - Shewana3_2751 0.87 +0.1 3,283,653 - -0.8 3,283,812 - Shewana3_2752 0.29 +0.2 3,283,912 + Shewana3_2752 0.56 +0.7 3,283,914 - Shewana3_2752 0.57 +0.2 3,284,358 + -0.5 3,284,384 - -0.7 3,284,489 + +3.5 3,284,489 + -0.9 3,284,497 - +0.9 3,284,519 - -0.3
Or see this region's nucleotide sequence