Experiment: A22 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2703 and Shewana3_2704 are separated by 47 nucleotides Shewana3_2704 and Shewana3_2705 are separated by 109 nucleotides Shewana3_2705 and Shewana3_2706 are separated by 171 nucleotides Shewana3_2706 and Shewana3_2707 are separated by 152 nucleotides
Shewana3_2703: Shewana3_2703 - TonB-dependent receptor (RefSeq), at 3,230,269 to 3,233,124
_2703
Shewana3_2704: Shewana3_2704 - helix-turn-helix, type 11 domain-containing protein (RefSeq), at 3,233,172 to 3,233,870
_2704
Shewana3_2705: Shewana3_2705 - transcription activator, effector binding (RefSeq), at 3,233,980 to 3,234,429
_2705
Shewana3_2706: Shewana3_2706 - glyoxalase/bleomycin resistance protein/dioxygenase (RefSeq), at 3,234,601 to 3,234,984
_2706
Shewana3_2707: Shewana3_2707 - phosphoglucomutase/phosphomannomutase alpha/beta/subunit (RefSeq), at 3,235,137 to 3,236,858
_2707
Position (kb)
3233
3234
3235 Strain fitness (log2 ratio)
-1
0
1
2 at 3233.020 kb on - strand at 3233.065 kb on + strand at 3233.765 kb on - strand, within Shewana3_2704 at 3233.798 kb on + strand, within Shewana3_2704 at 3234.072 kb on + strand, within Shewana3_2705 at 3234.190 kb on - strand, within Shewana3_2705 at 3234.274 kb on - strand, within Shewana3_2705 at 3234.426 kb on + strand at 3234.765 kb on + strand, within Shewana3_2706 at 3234.853 kb on - strand, within Shewana3_2706 at 3235.068 kb on - strand at 3235.200 kb on - strand at 3235.410 kb on - strand, within Shewana3_2707
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.008 mg/ml remove 3,233,020 - +2.2 3,233,065 + -0.6 3,233,765 - Shewana3_2704 0.85 -0.9 3,233,798 + Shewana3_2704 0.90 +0.7 3,234,072 + Shewana3_2705 0.20 +0.7 3,234,190 - Shewana3_2705 0.47 -1.3 3,234,274 - Shewana3_2705 0.65 -1.7 3,234,426 + +0.7 3,234,765 + Shewana3_2706 0.43 -0.2 3,234,853 - Shewana3_2706 0.66 +0.0 3,235,068 - -1.2 3,235,200 - +0.3 3,235,410 - Shewana3_2707 0.16 +0.3
Or see this region's nucleotide sequence