Experiment: A22 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2697 and Shewana3_2698 overlap by 11 nucleotides Shewana3_2698 and Shewana3_2699 are separated by 20 nucleotides Shewana3_2699 and Shewana3_2700 are separated by 7 nucleotides
Shewana3_2697: Shewana3_2697 - N-acetylglucosamine 6-phosphate deacetylase (RefSeq), at 3,223,185 to 3,224,369
_2697
Shewana3_2698: Shewana3_2698 - N-acetylglucosamine kinase (RefSeq), at 3,224,359 to 3,225,285
_2698
Shewana3_2699: Shewana3_2699 - sugar isomerase (SIS) (RefSeq), at 3,225,306 to 3,226,466
_2699
Shewana3_2700: Shewana3_2700 - tagatose-bisphosphate aldolase noncatalytic subunit (RefSeq), at 3,226,474 to 3,227,760
_2700
Position (kb)
3225
3226
3227 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3224.324 kb on + strand at 3224.662 kb on - strand, within Shewana3_2698 at 3224.664 kb on + strand, within Shewana3_2698 at 3224.715 kb on + strand, within Shewana3_2698 at 3224.723 kb on - strand, within Shewana3_2698 at 3224.723 kb on - strand, within Shewana3_2698 at 3224.754 kb on - strand, within Shewana3_2698 at 3225.044 kb on - strand, within Shewana3_2698 at 3225.094 kb on - strand, within Shewana3_2698 at 3225.128 kb on - strand, within Shewana3_2698 at 3225.364 kb on + strand at 3225.378 kb on - strand at 3225.683 kb on + strand, within Shewana3_2699 at 3225.691 kb on - strand, within Shewana3_2699 at 3225.799 kb on + strand, within Shewana3_2699 at 3225.799 kb on + strand, within Shewana3_2699 at 3225.799 kb on + strand, within Shewana3_2699 at 3225.807 kb on - strand, within Shewana3_2699 at 3225.807 kb on - strand, within Shewana3_2699 at 3225.905 kb on - strand, within Shewana3_2699 at 3226.083 kb on + strand, within Shewana3_2699 at 3226.127 kb on + strand, within Shewana3_2699 at 3226.127 kb on + strand, within Shewana3_2699 at 3226.194 kb on - strand, within Shewana3_2699 at 3226.261 kb on - strand, within Shewana3_2699 at 3226.403 kb on + strand at 3226.403 kb on + strand at 3226.488 kb on - strand at 3226.658 kb on - strand, within Shewana3_2700 at 3227.258 kb on + strand, within Shewana3_2700 at 3227.266 kb on - strand, within Shewana3_2700 at 3227.335 kb on - strand, within Shewana3_2700 at 3227.368 kb on + strand, within Shewana3_2700
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.008 mg/ml remove 3,224,324 + -0.7 3,224,662 - Shewana3_2698 0.33 +1.0 3,224,664 + Shewana3_2698 0.33 -1.7 3,224,715 + Shewana3_2698 0.38 -0.4 3,224,723 - Shewana3_2698 0.39 +2.1 3,224,723 - Shewana3_2698 0.39 -1.8 3,224,754 - Shewana3_2698 0.43 -0.3 3,225,044 - Shewana3_2698 0.74 +0.8 3,225,094 - Shewana3_2698 0.79 +1.0 3,225,128 - Shewana3_2698 0.83 +0.8 3,225,364 + +0.1 3,225,378 - -0.2 3,225,683 + Shewana3_2699 0.32 +0.6 3,225,691 - Shewana3_2699 0.33 +0.6 3,225,799 + Shewana3_2699 0.42 +0.2 3,225,799 + Shewana3_2699 0.42 -0.6 3,225,799 + Shewana3_2699 0.42 +0.7 3,225,807 - Shewana3_2699 0.43 +1.0 3,225,807 - Shewana3_2699 0.43 -0.5 3,225,905 - Shewana3_2699 0.52 -0.4 3,226,083 + Shewana3_2699 0.67 -1.7 3,226,127 + Shewana3_2699 0.71 -0.4 3,226,127 + Shewana3_2699 0.71 -0.0 3,226,194 - Shewana3_2699 0.76 +0.4 3,226,261 - Shewana3_2699 0.82 +0.2 3,226,403 + -0.9 3,226,403 + +0.6 3,226,488 - -0.0 3,226,658 - Shewana3_2700 0.14 +0.9 3,227,258 + Shewana3_2700 0.61 -0.2 3,227,266 - Shewana3_2700 0.62 -0.1 3,227,335 - Shewana3_2700 0.67 +0.1 3,227,368 + Shewana3_2700 0.69 -0.3
Or see this region's nucleotide sequence