Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2392

Experiment: A22 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2391 and Shewana3_2392 are separated by 376 nucleotidesShewana3_2392 and Shewana3_2393 are separated by 95 nucleotides Shewana3_2391: Shewana3_2391 - peptidase M22, glycoprotease (RefSeq), at 2,869,767 to 2,870,477 _2391 Shewana3_2392: Shewana3_2392 - delta-aminolevulinic acid dehydratase (RefSeq), at 2,870,854 to 2,871,852 _2392 Shewana3_2393: Shewana3_2393 - bifunctional methionine sulfoxide reductase B/A protein (RefSeq), at 2,871,948 to 2,872,853 _2393 Position (kb) 2870 2871 2872Strain fitness (log2 ratio) -1 0 1at 2870.536 kb on - strandat 2870.541 kb on - strandat 2870.662 kb on + strandat 2871.133 kb on + strand, within Shewana3_2392at 2871.171 kb on - strand, within Shewana3_2392at 2871.251 kb on + strand, within Shewana3_2392at 2871.276 kb on - strand, within Shewana3_2392at 2871.350 kb on - strand, within Shewana3_2392at 2871.395 kb on - strand, within Shewana3_2392at 2871.395 kb on - strand, within Shewana3_2392at 2871.527 kb on - strand, within Shewana3_2392at 2871.527 kb on - strand, within Shewana3_2392at 2871.940 kb on + strandat 2871.948 kb on - strandat 2872.119 kb on - strand, within Shewana3_2393at 2872.416 kb on - strand, within Shewana3_2393at 2872.462 kb on - strand, within Shewana3_2393at 2872.614 kb on - strand, within Shewana3_2393at 2872.774 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.008 mg/ml
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2,870,536 - -0.6
2,870,541 - +1.2
2,870,662 + +1.2
2,871,133 + Shewana3_2392 0.28 +0.5
2,871,171 - Shewana3_2392 0.32 +0.6
2,871,251 + Shewana3_2392 0.40 +0.3
2,871,276 - Shewana3_2392 0.42 +0.6
2,871,350 - Shewana3_2392 0.50 +1.3
2,871,395 - Shewana3_2392 0.54 +1.0
2,871,395 - Shewana3_2392 0.54 -0.4
2,871,527 - Shewana3_2392 0.67 +1.6
2,871,527 - Shewana3_2392 0.67 +0.2
2,871,940 + -0.6
2,871,948 - -0.4
2,872,119 - Shewana3_2393 0.19 -1.2
2,872,416 - Shewana3_2393 0.52 -0.8
2,872,462 - Shewana3_2393 0.57 +0.4
2,872,614 - Shewana3_2393 0.74 +0.6
2,872,774 + +1.6

Or see this region's nucleotide sequence