Experiment: A22 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2346 and Shewana3_2347 overlap by 4 nucleotides Shewana3_2347 and Shewana3_2348 are separated by 44 nucleotides Shewana3_2348 and Shewana3_2349 overlap by 8 nucleotides
Shewana3_2346: Shewana3_2346 - acriflavin resistance protein (RefSeq), at 2,822,377 to 2,825,451
_2346
Shewana3_2347: Shewana3_2347 - RND family efflux transporter MFP subunit (RefSeq), at 2,825,448 to 2,826,572
_2347
Shewana3_2348: Shewana3_2348 - cytochrome c biogenesis protein, transmembrane region (RefSeq), at 2,826,617 to 2,827,315
_2348
Shewana3_2349: Shewana3_2349 - hypothetical protein (RefSeq), at 2,827,308 to 2,827,841
_2349
Position (kb)
2825
2826
2827 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2824.691 kb on - strand, within Shewana3_2346 at 2824.737 kb on - strand, within Shewana3_2346 at 2824.857 kb on + strand, within Shewana3_2346 at 2824.857 kb on + strand, within Shewana3_2346 at 2824.865 kb on - strand, within Shewana3_2346 at 2824.914 kb on + strand at 2824.920 kb on - strand, within Shewana3_2346 at 2825.052 kb on - strand, within Shewana3_2346 at 2825.202 kb on - strand at 2825.202 kb on - strand at 2825.237 kb on - strand at 2825.240 kb on - strand at 2825.586 kb on + strand, within Shewana3_2347 at 2825.591 kb on + strand, within Shewana3_2347 at 2826.034 kb on + strand, within Shewana3_2347 at 2826.069 kb on + strand, within Shewana3_2347 at 2826.069 kb on + strand, within Shewana3_2347 at 2826.102 kb on - strand, within Shewana3_2347 at 2826.292 kb on - strand, within Shewana3_2347 at 2826.317 kb on + strand, within Shewana3_2347 at 2826.594 kb on - strand at 2826.930 kb on - strand, within Shewana3_2348 at 2827.176 kb on - strand, within Shewana3_2348 at 2827.277 kb on + strand at 2827.430 kb on + strand, within Shewana3_2349 at 2827.458 kb on + strand, within Shewana3_2349 at 2827.500 kb on + strand, within Shewana3_2349
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.008 mg/ml remove 2,824,691 - Shewana3_2346 0.75 +0.9 2,824,737 - Shewana3_2346 0.77 -0.4 2,824,857 + Shewana3_2346 0.81 +0.6 2,824,857 + Shewana3_2346 0.81 +0.6 2,824,865 - Shewana3_2346 0.81 +0.6 2,824,914 + +0.6 2,824,920 - Shewana3_2346 0.83 +0.6 2,825,052 - Shewana3_2346 0.87 -1.4 2,825,202 - +0.6 2,825,202 - -0.4 2,825,237 - -0.4 2,825,240 - +0.6 2,825,586 + Shewana3_2347 0.12 +0.6 2,825,591 + Shewana3_2347 0.13 +0.6 2,826,034 + Shewana3_2347 0.52 -0.4 2,826,069 + Shewana3_2347 0.55 -0.4 2,826,069 + Shewana3_2347 0.55 -1.0 2,826,102 - Shewana3_2347 0.58 +1.6 2,826,292 - Shewana3_2347 0.75 +2.6 2,826,317 + Shewana3_2347 0.77 +0.6 2,826,594 - +0.0 2,826,930 - Shewana3_2348 0.45 +0.6 2,827,176 - Shewana3_2348 0.80 -2.0 2,827,277 + -0.5 2,827,430 + Shewana3_2349 0.23 +0.6 2,827,458 + Shewana3_2349 0.28 +0.6 2,827,500 + Shewana3_2349 0.36 +0.6
Or see this region's nucleotide sequence