Experiment: A22 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2167 and Shewana3_2168 are separated by 125 nucleotides Shewana3_2168 and Shewana3_2169 are separated by 0 nucleotides Shewana3_2169 and Shewana3_2170 are separated by 3 nucleotides
Shewana3_2167: Shewana3_2167 - diguanylate cyclase/phosphodiesterase (RefSeq), at 2,598,640 to 2,600,544
_2167
Shewana3_2168: Shewana3_2168 - Na(+)-translocating NADH-quinone reductase subunit E (RefSeq), at 2,600,670 to 2,601,248
_2168
Shewana3_2169: Shewana3_2169 - electron transport complex protein RnfB (RefSeq), at 2,601,249 to 2,601,830
_2169
Shewana3_2170: Shewana3_2170 - electron transport complex protein RnfC (RefSeq), at 2,601,834 to 2,604,200
_2170
Position (kb)
2600
2601
2602 Strain fitness (log2 ratio)
-1
0
1 at 2599.694 kb on + strand, within Shewana3_2167 at 2599.709 kb on + strand, within Shewana3_2167 at 2599.743 kb on - strand, within Shewana3_2167 at 2599.743 kb on - strand, within Shewana3_2167 at 2599.748 kb on - strand, within Shewana3_2167 at 2600.024 kb on + strand, within Shewana3_2167 at 2600.096 kb on + strand, within Shewana3_2167 at 2600.104 kb on - strand, within Shewana3_2167 at 2600.258 kb on - strand, within Shewana3_2167 at 2600.275 kb on + strand, within Shewana3_2167 at 2600.334 kb on + strand, within Shewana3_2167 at 2600.361 kb on - strand at 2600.511 kb on + strand at 2600.563 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.008 mg/ml remove 2,599,694 + Shewana3_2167 0.55 -0.4 2,599,709 + Shewana3_2167 0.56 +1.2 2,599,743 - Shewana3_2167 0.58 +0.6 2,599,743 - Shewana3_2167 0.58 +0.3 2,599,748 - Shewana3_2167 0.58 +0.6 2,600,024 + Shewana3_2167 0.73 +0.6 2,600,096 + Shewana3_2167 0.76 -0.4 2,600,104 - Shewana3_2167 0.77 +0.6 2,600,258 - Shewana3_2167 0.85 +0.6 2,600,275 + Shewana3_2167 0.86 +0.6 2,600,334 + Shewana3_2167 0.89 +0.6 2,600,361 - +0.6 2,600,511 + +0.6 2,600,563 - +0.6
Or see this region's nucleotide sequence