Experiment: A22 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2059 and Shewana3_2060 are separated by 56 nucleotides Shewana3_2060 and Shewana3_2061 are separated by 259 nucleotides Shewana3_2061 and Shewana3_2062 are separated by 106 nucleotides
Shewana3_2059: Shewana3_2059 - DsrE family protein (RefSeq), at 2,465,566 to 2,465,958
_2059
Shewana3_2060: Shewana3_2060 - hypothetical protein (RefSeq), at 2,466,015 to 2,466,674
_2060
Shewana3_2061: Shewana3_2061 - putative DNA-binding transcriptional regulator (RefSeq), at 2,466,934 to 2,467,845
_2061
Shewana3_2062: Shewana3_2062 - inner membrane transport protein YdhC (RefSeq), at 2,467,952 to 2,469,223
_2062
Position (kb)
2466
2467
2468 Strain fitness (log2 ratio)
-1
0
1
2 at 2466.070 kb on - strand at 2466.802 kb on - strand at 2466.890 kb on - strand at 2466.915 kb on - strand at 2467.140 kb on + strand, within Shewana3_2061 at 2467.411 kb on + strand, within Shewana3_2061 at 2467.555 kb on - strand, within Shewana3_2061 at 2467.668 kb on - strand, within Shewana3_2061 at 2467.668 kb on - strand, within Shewana3_2061 at 2468.141 kb on + strand, within Shewana3_2062 at 2468.304 kb on + strand, within Shewana3_2062 at 2468.625 kb on + strand, within Shewana3_2062 at 2468.785 kb on + strand, within Shewana3_2062 at 2468.796 kb on + strand, within Shewana3_2062
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.008 mg/ml remove 2,466,070 - -0.4 2,466,802 - +1.6 2,466,890 - +0.6 2,466,915 - +2.2 2,467,140 + Shewana3_2061 0.23 +0.6 2,467,411 + Shewana3_2061 0.52 +0.6 2,467,555 - Shewana3_2061 0.68 +1.4 2,467,668 - Shewana3_2061 0.80 +0.4 2,467,668 - Shewana3_2061 0.80 +0.5 2,468,141 + Shewana3_2062 0.15 +0.1 2,468,304 + Shewana3_2062 0.28 +0.1 2,468,625 + Shewana3_2062 0.53 +1.3 2,468,785 + Shewana3_2062 0.65 +1.3 2,468,796 + Shewana3_2062 0.66 +0.9
Or see this region's nucleotide sequence