Experiment: A22 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2040 and Shewana3_2041 are separated by 9 nucleotides Shewana3_2041 and Shewana3_2042 are separated by 221 nucleotides Shewana3_2042 and Shewana3_2043 are separated by 155 nucleotides
Shewana3_2040: Shewana3_2040 - riboflavin synthase subunit alpha (RefSeq), at 2,449,582 to 2,450,202
_2040
Shewana3_2041: Shewana3_2041 - hypothetical protein (RefSeq), at 2,450,212 to 2,450,412
_2041
Shewana3_2042: Shewana3_2042 - no description, at 2,450,634 to 2,451,113
_2042
Shewana3_2043: Shewana3_2043 - threonyl-tRNA synthetase (RefSeq), at 2,451,269 to 2,453,197
_2043
Position (kb)
2450
2451
2452 Strain fitness (log2 ratio)
-1
0
1
2 at 2449.649 kb on + strand, within Shewana3_2040 at 2449.780 kb on + strand, within Shewana3_2040 at 2449.788 kb on - strand, within Shewana3_2040 at 2449.821 kb on - strand, within Shewana3_2040 at 2449.896 kb on - strand, within Shewana3_2040 at 2449.973 kb on + strand, within Shewana3_2040 at 2450.095 kb on - strand, within Shewana3_2040 at 2450.303 kb on - strand, within Shewana3_2041 at 2450.422 kb on - strand at 2450.473 kb on + strand at 2450.479 kb on - strand at 2450.584 kb on + strand at 2450.584 kb on + strand at 2450.679 kb on + strand at 2450.692 kb on - strand, within Shewana3_2042 at 2450.772 kb on + strand, within Shewana3_2042 at 2450.782 kb on + strand, within Shewana3_2042 at 2450.790 kb on - strand, within Shewana3_2042 at 2450.892 kb on - strand at 2450.989 kb on + strand, within Shewana3_2042 at 2450.997 kb on - strand, within Shewana3_2042 at 2451.089 kb on + strand at 2451.178 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.008 mg/ml remove 2,449,649 + Shewana3_2040 0.11 +0.2 2,449,780 + Shewana3_2040 0.32 -0.4 2,449,788 - Shewana3_2040 0.33 +0.6 2,449,821 - Shewana3_2040 0.38 +0.6 2,449,896 - Shewana3_2040 0.51 +0.6 2,449,973 + Shewana3_2040 0.63 +0.3 2,450,095 - Shewana3_2040 0.83 +0.6 2,450,303 - Shewana3_2041 0.45 +0.6 2,450,422 - -0.4 2,450,473 + +0.6 2,450,479 - +0.6 2,450,584 + +0.6 2,450,584 + +2.0 2,450,679 + -1.4 2,450,692 - Shewana3_2042 0.12 +1.2 2,450,772 + Shewana3_2042 0.29 +2.2 2,450,782 + Shewana3_2042 0.31 -1.0 2,450,790 - Shewana3_2042 0.33 +0.6 2,450,892 - +0.6 2,450,989 + Shewana3_2042 0.74 +0.2 2,450,997 - Shewana3_2042 0.76 +0.6 2,451,089 + +0.2 2,451,178 + -0.0
Or see this region's nucleotide sequence