Experiment: A22 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1696 and Shewana3_1697 are separated by 81 nucleotides Shewana3_1697 and Shewana3_1698 are separated by 209 nucleotides Shewana3_1698 and Shewana3_1699 are separated by 342 nucleotides
Shewana3_1696: Shewana3_1696 - hypothetical protein (RefSeq), at 1,994,679 to 1,995,053
_1696
Shewana3_1697: Shewana3_1697 - cupin 2 domain-containing protein (RefSeq), at 1,995,135 to 1,995,674
_1697
Shewana3_1698: Shewana3_1698 - AraC family transcriptional regulator (RefSeq), at 1,995,884 to 1,996,792
_1698
Shewana3_1699: Shewana3_1699 - MATE efflux family protein (RefSeq), at 1,997,135 to 1,998,697
_1699
Position (kb)
1995
1996
1997 Strain fitness (log2 ratio)
-1
0
1 at 1994.965 kb on - strand, within Shewana3_1696 at 1995.049 kb on - strand at 1995.270 kb on + strand, within Shewana3_1697 at 1995.398 kb on + strand, within Shewana3_1697 at 1995.553 kb on + strand, within Shewana3_1697 at 1995.750 kb on - strand at 1996.072 kb on + strand, within Shewana3_1698 at 1996.080 kb on - strand, within Shewana3_1698 at 1996.088 kb on - strand, within Shewana3_1698 at 1996.546 kb on - strand, within Shewana3_1698 at 1997.196 kb on - strand at 1997.413 kb on + strand, within Shewana3_1699 at 1997.435 kb on + strand, within Shewana3_1699 at 1997.445 kb on + strand, within Shewana3_1699 at 1997.465 kb on - strand, within Shewana3_1699 at 1997.592 kb on + strand, within Shewana3_1699
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.008 mg/ml remove 1,994,965 - Shewana3_1696 0.76 +0.6 1,995,049 - -1.0 1,995,270 + Shewana3_1697 0.25 +1.6 1,995,398 + Shewana3_1697 0.49 +0.0 1,995,553 + Shewana3_1697 0.77 +1.3 1,995,750 - -0.6 1,996,072 + Shewana3_1698 0.21 +0.6 1,996,080 - Shewana3_1698 0.22 +0.6 1,996,088 - Shewana3_1698 0.22 +0.6 1,996,546 - Shewana3_1698 0.73 +0.6 1,997,196 - -0.8 1,997,413 + Shewana3_1699 0.18 -0.3 1,997,435 + Shewana3_1699 0.19 +0.6 1,997,445 + Shewana3_1699 0.20 +0.6 1,997,465 - Shewana3_1699 0.21 -0.4 1,997,592 + Shewana3_1699 0.29 -1.4
Or see this region's nucleotide sequence