Experiment: A22 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1393 and Shewana3_1394 overlap by 1 nucleotides Shewana3_1394 and Shewana3_1395 are separated by 10 nucleotides Shewana3_1395 and Shewana3_1396 are separated by 151 nucleotides
Shewana3_1393: Shewana3_1393 - protein of unknown function DUF940, membrane lipoprotein putative (RefSeq), at 1,607,657 to 1,610,032
_1393
Shewana3_1394: Shewana3_1394 - hypothetical protein (RefSeq), at 1,610,032 to 1,610,820
_1394
Shewana3_1395: Shewana3_1395 - putative lipoprotein (RefSeq), at 1,610,831 to 1,611,541
_1395
Shewana3_1396: Shewana3_1396 - hypothetical protein (RefSeq), at 1,611,693 to 1,611,941
_1396
Position (kb)
1610
1611 Strain fitness (log2 ratio)
-1
0
1 at 1609.037 kb on + strand, within Shewana3_1393 at 1609.199 kb on - strand, within Shewana3_1393 at 1609.369 kb on - strand, within Shewana3_1393 at 1609.533 kb on + strand, within Shewana3_1393 at 1609.635 kb on + strand, within Shewana3_1393 at 1609.687 kb on - strand, within Shewana3_1393 at 1610.133 kb on - strand, within Shewana3_1394 at 1610.252 kb on - strand, within Shewana3_1394 at 1610.485 kb on - strand, within Shewana3_1394 at 1610.583 kb on - strand, within Shewana3_1394 at 1610.824 kb on + strand at 1611.335 kb on + strand, within Shewana3_1395 at 1611.402 kb on - strand, within Shewana3_1395 at 1611.414 kb on - strand, within Shewana3_1395 at 1611.456 kb on + strand at 1611.484 kb on + strand at 1611.717 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.008 mg/ml remove 1,609,037 + Shewana3_1393 0.58 +0.7 1,609,199 - Shewana3_1393 0.65 -0.3 1,609,369 - Shewana3_1393 0.72 +1.3 1,609,533 + Shewana3_1393 0.79 -0.9 1,609,635 + Shewana3_1393 0.83 +0.7 1,609,687 - Shewana3_1393 0.85 -1.3 1,610,133 - Shewana3_1394 0.13 -0.9 1,610,252 - Shewana3_1394 0.28 -0.9 1,610,485 - Shewana3_1394 0.57 +1.4 1,610,583 - Shewana3_1394 0.70 -1.3 1,610,824 + +0.6 1,611,335 + Shewana3_1395 0.71 +0.6 1,611,402 - Shewana3_1395 0.80 +0.6 1,611,414 - Shewana3_1395 0.82 +0.6 1,611,456 + +0.6 1,611,484 + +0.6 1,611,717 - +0.1
Or see this region's nucleotide sequence