Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1214
Experiment: A22 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | A22 0.008 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,418,624 | + | Shewana3_1213 | 0.44 | -0.2 | |
1,418,677 | - | Shewana3_1213 | 0.48 | +1.5 | |
1,418,891 | - | Shewana3_1213 | 0.62 | +0.7 | |
1,418,907 | - | Shewana3_1213 | 0.63 | +0.4 | |
1,419,204 | - | Shewana3_1213 | 0.83 | +0.7 | |
1,419,592 | - | -0.3 | |||
1,419,644 | + | Shewana3_1214 | 0.11 | -0.2 | |
1,419,652 | - | Shewana3_1214 | 0.12 | -0.4 | |
1,419,809 | + | Shewana3_1214 | 0.45 | +0.4 | |
1,419,945 | + | Shewana3_1214 | 0.73 | +1.3 | |
1,420,031 | + | -0.5 | |||
1,420,076 | - | +0.1 | |||
1,420,148 | + | Shewana3_1215 | 0.15 | -0.3 | |
1,420,151 | - | Shewana3_1215 | 0.15 | +1.9 | |
1,420,221 | + | Shewana3_1215 | 0.24 | -0.3 | |
1,420,348 | + | Shewana3_1215 | 0.40 | -0.0 | |
1,420,411 | + | Shewana3_1215 | 0.48 | +0.7 | |
1,420,585 | + | Shewana3_1215 | 0.70 | -0.3 | |
1,420,593 | - | Shewana3_1215 | 0.71 | +1.5 | |
1,420,648 | + | Shewana3_1215 | 0.78 | +0.1 | |
1,420,832 | + | +0.7 | |||
1,420,861 | - | -0.9 |
Or see this region's nucleotide sequence