Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0690

Experiment: A22 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0689 and Shewana3_0690 are separated by 125 nucleotidesShewana3_0690 and Shewana3_0691 are separated by 402 nucleotides Shewana3_0689: Shewana3_0689 - DegS serine peptidase (RefSeq), at 804,742 to 805,824 _0689 Shewana3_0690: Shewana3_0690 - peptidase Do (RefSeq), at 805,950 to 807,302 _0690 Shewana3_0691: Shewana3_0691 - AFG1 family ATPase (RefSeq), at 807,705 to 808,871 _0691 Position (kb) 805 806 807 808Strain fitness (log2 ratio) -1 0 1at 804.995 kb on - strand, within Shewana3_0689at 805.051 kb on + strand, within Shewana3_0689at 805.085 kb on - strand, within Shewana3_0689at 805.897 kb on + strandat 806.030 kb on - strandat 806.113 kb on + strandat 806.121 kb on - strand, within Shewana3_0690at 806.521 kb on - strand, within Shewana3_0690at 806.753 kb on + strand, within Shewana3_0690at 806.999 kb on - strand, within Shewana3_0690at 807.514 kb on - strandat 807.580 kb on + strandat 807.588 kb on - strandat 807.739 kb on + strandat 807.766 kb on + strandat 807.841 kb on - strand, within Shewana3_0691at 807.900 kb on + strand, within Shewana3_0691at 807.976 kb on + strand, within Shewana3_0691at 808.102 kb on - strand, within Shewana3_0691at 808.102 kb on - strand, within Shewana3_0691

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.008 mg/ml
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804,995 - Shewana3_0689 0.23 -1.1
805,051 + Shewana3_0689 0.29 -0.0
805,085 - Shewana3_0689 0.32 -0.6
805,897 + +1.0
806,030 - -0.3
806,113 + -0.0
806,121 - Shewana3_0690 0.13 -0.7
806,521 - Shewana3_0690 0.42 -1.2
806,753 + Shewana3_0690 0.59 +1.0
806,999 - Shewana3_0690 0.78 -1.3
807,514 - +0.4
807,580 + -0.3
807,588 - +0.2
807,739 + -0.6
807,766 + -0.3
807,841 - Shewana3_0691 0.12 -0.7
807,900 + Shewana3_0691 0.17 +0.2
807,976 + Shewana3_0691 0.23 -0.2
808,102 - Shewana3_0691 0.34 +0.3
808,102 - Shewana3_0691 0.34 +1.1

Or see this region's nucleotide sequence