Experiment: A22 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0647 and Shewana3_0648 are separated by 607 nucleotides Shewana3_0648 and Shewana3_0649 are separated by 296 nucleotides
Shewana3_0647: Shewana3_0647 - NERD domain-containing protein (RefSeq), at 763,691 to 764,680
_0647
Shewana3_0648: Shewana3_0648 - fructose-1,6-bisphosphatase (RefSeq), at 765,288 to 766,280
_0648
Shewana3_0649: Shewana3_0649 - dipeptidyl-peptidase IV (RefSeq), at 766,577 to 768,868
_0649
Position (kb) 765
766
767 Strain fitness (log2 ratio) -2
-1
0
1
2 at 764.337 kb on - strand, within Shewana3_0647 at 764.340 kb on + strand, within Shewana3_0647 at 764.460 kb on - strand, within Shewana3_0647 at 764.534 kb on + strand, within Shewana3_0647 at 764.563 kb on + strand, within Shewana3_0647 at 764.593 kb on + strand at 764.593 kb on + strand at 764.601 kb on - strand at 764.643 kb on - strand at 764.768 kb on + strand at 764.776 kb on - strand at 764.830 kb on - strand at 764.873 kb on - strand at 764.962 kb on + strand at 765.086 kb on + strand at 765.299 kb on - strand at 765.564 kb on + strand, within Shewana3_0648 at 765.564 kb on + strand, within Shewana3_0648 at 765.571 kb on + strand, within Shewana3_0648 at 765.579 kb on - strand, within Shewana3_0648 at 765.628 kb on - strand, within Shewana3_0648 at 765.802 kb on - strand, within Shewana3_0648 at 765.897 kb on - strand, within Shewana3_0648 at 765.979 kb on - strand, within Shewana3_0648 at 766.193 kb on - strand at 766.265 kb on + strand at 766.273 kb on - strand at 766.412 kb on + strand at 766.412 kb on + strand at 766.412 kb on + strand at 766.450 kb on + strand at 766.552 kb on - strand at 766.712 kb on - strand at 766.712 kb on - strand at 766.880 kb on - strand, within Shewana3_0649 at 767.003 kb on + strand, within Shewana3_0649 at 767.016 kb on - strand, within Shewana3_0649
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.008 mg/ml remove 764,337 - Shewana3_0647 0.65 +0.6 764,340 + Shewana3_0647 0.66 -0.6 764,460 - Shewana3_0647 0.78 -0.6 764,534 + Shewana3_0647 0.85 -1.3 764,563 + Shewana3_0647 0.88 -0.3 764,593 + +0.6 764,593 + +0.6 764,601 - +0.3 764,643 - +1.4 764,768 + -0.3 764,776 - +1.0 764,830 - -0.0 764,873 - +1.0 764,962 + +0.1 765,086 + -0.5 765,299 - -0.1 765,564 + Shewana3_0648 0.28 -1.0 765,564 + Shewana3_0648 0.28 -0.0 765,571 + Shewana3_0648 0.28 -1.8 765,579 - Shewana3_0648 0.29 +0.0 765,628 - Shewana3_0648 0.34 -0.0 765,802 - Shewana3_0648 0.52 -0.0 765,897 - Shewana3_0648 0.61 -0.6 765,979 - Shewana3_0648 0.70 -2.2 766,193 - -0.4 766,265 + -1.6 766,273 - -1.0 766,412 + +0.6 766,412 + -0.6 766,412 + +0.7 766,450 + +0.1 766,552 - -0.0 766,712 - -0.0 766,712 - -0.1 766,880 - Shewana3_0649 0.13 +2.0 767,003 + Shewana3_0649 0.19 +0.3 767,016 - Shewana3_0649 0.19 -1.6
Or see this region's nucleotide sequence