Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0278

Experiment: A22 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmoaC and Shewana3_0276 are separated by 19 nucleotidesShewana3_0276 and Shewana3_0277 are separated by 1 nucleotidesShewana3_0277 and Shewana3_0278 are separated by 39 nucleotidesShewana3_0278 and Shewana3_0279 are separated by 8 nucleotidesShewana3_0279 and Shewana3_0280 overlap by 20 nucleotides Shewana3_0275: moaC - molybdenum cofactor biosynthesis protein C (RefSeq), at 310,891 to 311,370 moaC Shewana3_0276: Shewana3_0276 - molybdopterin synthase subunit MoaD (RefSeq), at 311,390 to 311,641 _0276 Shewana3_0277: Shewana3_0277 - molybdopterin synthase subunit MoaE (RefSeq), at 311,643 to 312,110 _0277 Shewana3_0278: Shewana3_0278 - molybdenum ABC transporter, periplasmic molybdate-binding protein (RefSeq), at 312,150 to 312,953 _0278 Shewana3_0279: Shewana3_0279 - molybdate ABC transporter, inner membrane subunit (RefSeq), at 312,962 to 313,642 _0279 Shewana3_0280: Shewana3_0280 - ABC transporter related (RefSeq), at 313,623 to 314,726 _0280 Position (kb) 312 313Strain fitness (log2 ratio) -2 -1 0 1at 311.189 kb on + strand, within moaCat 311.189 kb on + strand, within moaCat 311.189 kb on + strand, within moaCat 311.189 kb on + strand, within moaCat 311.197 kb on - strand, within moaCat 311.197 kb on - strand, within moaCat 311.197 kb on - strand, within moaCat 311.197 kb on - strand, within moaCat 311.280 kb on + strand, within moaCat 311.280 kb on + strand, within moaCat 311.280 kb on + strand, within moaCat 311.280 kb on + strand, within moaCat 311.280 kb on + strand, within moaCat 311.280 kb on + strand, within moaCat 311.280 kb on + strand, within moaCat 311.280 kb on + strand, within moaCat 311.280 kb on + strand, within moaCat 311.288 kb on - strand, within moaCat 311.288 kb on - strand, within moaCat 311.288 kb on - strand, within moaCat 311.288 kb on - strand, within moaCat 311.355 kb on + strandat 311.355 kb on + strandat 311.363 kb on - strandat 311.528 kb on + strand, within Shewana3_0276at 311.680 kb on + strandat 311.784 kb on - strand, within Shewana3_0277at 311.798 kb on - strand, within Shewana3_0277at 311.805 kb on - strand, within Shewana3_0277at 311.821 kb on - strand, within Shewana3_0277at 311.881 kb on - strand, within Shewana3_0277at 311.950 kb on - strand, within Shewana3_0277at 312.041 kb on + strand, within Shewana3_0277at 312.105 kb on + strandat 312.214 kb on + strandat 312.222 kb on - strandat 312.252 kb on - strand, within Shewana3_0278at 312.283 kb on + strand, within Shewana3_0278at 312.519 kb on + strand, within Shewana3_0278at 312.527 kb on - strand, within Shewana3_0278at 312.606 kb on - strand, within Shewana3_0278at 312.606 kb on - strand, within Shewana3_0278at 312.783 kb on + strand, within Shewana3_0278at 312.797 kb on - strand, within Shewana3_0278at 312.939 kb on - strandat 312.954 kb on + strandat 312.954 kb on + strandat 313.078 kb on + strand, within Shewana3_0279at 313.078 kb on + strand, within Shewana3_0279at 313.085 kb on + strand, within Shewana3_0279at 313.086 kb on - strand, within Shewana3_0279at 313.086 kb on - strand, within Shewana3_0279at 313.086 kb on - strand, within Shewana3_0279at 313.086 kb on - strand, within Shewana3_0279at 313.178 kb on - strand, within Shewana3_0279at 313.302 kb on + strand, within Shewana3_0279at 313.302 kb on + strand, within Shewana3_0279at 313.435 kb on + strand, within Shewana3_0279at 313.511 kb on + strand, within Shewana3_0279at 313.553 kb on + strand, within Shewana3_0279at 313.621 kb on + strandat 313.680 kb on - strandat 313.798 kb on + strand, within Shewana3_0280at 313.798 kb on + strand, within Shewana3_0280at 313.798 kb on + strand, within Shewana3_0280at 313.806 kb on - strand, within Shewana3_0280

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.008 mg/ml
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311,189 + moaC Shewana3_0275 0.62 +0.1
311,189 + moaC Shewana3_0275 0.62 -0.2
311,189 + moaC Shewana3_0275 0.62 -0.1
311,189 + moaC Shewana3_0275 0.62 -0.7
311,197 - moaC Shewana3_0275 0.64 -0.6
311,197 - moaC Shewana3_0275 0.64 -0.8
311,197 - moaC Shewana3_0275 0.64 +0.2
311,197 - moaC Shewana3_0275 0.64 +0.5
311,280 + moaC Shewana3_0275 0.81 -0.6
311,280 + moaC Shewana3_0275 0.81 -0.1
311,280 + moaC Shewana3_0275 0.81 -0.1
311,280 + moaC Shewana3_0275 0.81 -0.1
311,280 + moaC Shewana3_0275 0.81 -0.2
311,280 + moaC Shewana3_0275 0.81 -0.6
311,280 + moaC Shewana3_0275 0.81 -0.6
311,280 + moaC Shewana3_0275 0.81 +0.0
311,280 + moaC Shewana3_0275 0.81 -0.8
311,288 - moaC Shewana3_0275 0.83 -0.4
311,288 - moaC Shewana3_0275 0.83 -0.8
311,288 - moaC Shewana3_0275 0.83 +0.4
311,288 - moaC Shewana3_0275 0.83 -0.6
311,355 + -0.3
311,355 + -1.4
311,363 - -0.5
311,528 + Shewana3_0276 0.55 +0.2
311,680 + -0.3
311,784 - Shewana3_0277 0.30 +0.5
311,798 - Shewana3_0277 0.33 +0.3
311,805 - Shewana3_0277 0.35 -0.6
311,821 - Shewana3_0277 0.38 -0.1
311,881 - Shewana3_0277 0.51 -1.8
311,950 - Shewana3_0277 0.66 +0.2
312,041 + Shewana3_0277 0.85 -0.3
312,105 + -0.1
312,214 + -0.6
312,222 - +0.7
312,252 - Shewana3_0278 0.13 -0.4
312,283 + Shewana3_0278 0.17 -0.1
312,519 + Shewana3_0278 0.46 -0.7
312,527 - Shewana3_0278 0.47 -0.3
312,606 - Shewana3_0278 0.57 -0.5
312,606 - Shewana3_0278 0.57 -0.9
312,783 + Shewana3_0278 0.79 -0.7
312,797 - Shewana3_0278 0.80 +0.0
312,939 - +0.1
312,954 + -0.1
312,954 + +0.0
313,078 + Shewana3_0279 0.17 +0.1
313,078 + Shewana3_0279 0.17 +0.2
313,085 + Shewana3_0279 0.18 +0.4
313,086 - Shewana3_0279 0.18 -1.9
313,086 - Shewana3_0279 0.18 +0.4
313,086 - Shewana3_0279 0.18 +0.2
313,086 - Shewana3_0279 0.18 +0.0
313,178 - Shewana3_0279 0.32 -0.3
313,302 + Shewana3_0279 0.50 -0.5
313,302 + Shewana3_0279 0.50 +0.7
313,435 + Shewana3_0279 0.69 -0.9
313,511 + Shewana3_0279 0.81 +0.2
313,553 + Shewana3_0279 0.87 -0.9
313,621 + -0.8
313,680 - +0.2
313,798 + Shewana3_0280 0.16 -0.2
313,798 + Shewana3_0280 0.16 -0.1
313,798 + Shewana3_0280 0.16 -1.1
313,806 - Shewana3_0280 0.17 -0.8

Or see this region's nucleotide sequence