Experiment: A22 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4218 and Shewana3_4219 are separated by 12 nucleotides Shewana3_4219 and Shewana3_4220 overlap by 1 nucleotides
Shewana3_4218: Shewana3_4218 - Type IV secretory pathway VirB4 components-like protein (RefSeq), at 89,025 to 91,709
_4218
Shewana3_4219: Shewana3_4219 - hypothetical protein (RefSeq), at 91,722 to 92,450
_4219
Shewana3_4220: Shewana3_4220 - hypothetical protein (RefSeq), at 92,450 to 93,277
_4220
Position (kb)
91
92
93 Strain fitness (log2 ratio)
-2
-1
0
1 at 90.741 kb on + strand, within Shewana3_4218 at 90.748 kb on - strand, within Shewana3_4218 at 91.030 kb on + strand, within Shewana3_4218 at 91.190 kb on + strand, within Shewana3_4218 at 91.295 kb on + strand, within Shewana3_4218 at 91.322 kb on + strand, within Shewana3_4218 at 91.434 kb on + strand, within Shewana3_4218 at 91.434 kb on + strand, within Shewana3_4218 at 91.452 kb on - strand at 91.489 kb on - strand at 91.558 kb on - strand at 91.870 kb on - strand, within Shewana3_4219 at 92.080 kb on - strand, within Shewana3_4219 at 92.080 kb on - strand, within Shewana3_4219 at 92.140 kb on - strand, within Shewana3_4219 at 92.212 kb on + strand, within Shewana3_4219 at 92.330 kb on - strand, within Shewana3_4219 at 92.334 kb on + strand, within Shewana3_4219 at 92.571 kb on - strand, within Shewana3_4220 at 92.605 kb on - strand, within Shewana3_4220 at 92.789 kb on - strand, within Shewana3_4220 at 92.872 kb on - strand, within Shewana3_4220 at 92.887 kb on - strand, within Shewana3_4220 at 92.913 kb on + strand, within Shewana3_4220 at 93.003 kb on - strand, within Shewana3_4220 at 93.147 kb on + strand, within Shewana3_4220
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.008 mg/ml remove 90,741 + Shewana3_4218 0.64 +1.1 90,748 - Shewana3_4218 0.64 -2.1 91,030 + Shewana3_4218 0.75 -0.1 91,190 + Shewana3_4218 0.81 +0.1 91,295 + Shewana3_4218 0.85 +1.1 91,322 + Shewana3_4218 0.86 -1.6 91,434 + Shewana3_4218 0.90 +1.1 91,434 + Shewana3_4218 0.90 +1.1 91,452 - +0.6 91,489 - -0.9 91,558 - -0.7 91,870 - Shewana3_4219 0.20 +0.4 92,080 - Shewana3_4219 0.49 +0.3 92,080 - Shewana3_4219 0.49 +0.2 92,140 - Shewana3_4219 0.57 +0.1 92,212 + Shewana3_4219 0.67 +0.3 92,330 - Shewana3_4219 0.83 +0.3 92,334 + Shewana3_4219 0.84 -0.5 92,571 - Shewana3_4220 0.15 -0.3 92,605 - Shewana3_4220 0.19 -0.8 92,789 - Shewana3_4220 0.41 -0.1 92,872 - Shewana3_4220 0.51 -0.5 92,887 - Shewana3_4220 0.53 -0.3 92,913 + Shewana3_4220 0.56 +1.1 93,003 - Shewana3_4220 0.67 +0.5 93,147 + Shewana3_4220 0.84 -0.4
Or see this region's nucleotide sequence