Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4146

Experiment: A22 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.008 mg/ml
4,819	+		Shewana3_4145	0.66	+1.6
4,853	+		Shewana3_4145	0.67	+1.1
4,853	+		Shewana3_4145	0.67	+1.1
4,861	-		Shewana3_4145	0.68	-0.5
4,892	+		Shewana3_4145	0.69	+1.5
4,900	-		Shewana3_4145	0.69	+0.5
4,900	-		Shewana3_4145	0.69	-0.7
4,972	-		Shewana3_4145	0.73	-0.2
5,112	+		Shewana3_4145	0.79	-0.5
5,152	+		Shewana3_4145	0.80	+2.1
5,388	-				+0.2
5,430	+				+1.1
5,441	-				-0.8
5,521	+				+1.1
5,548	-				-0.3
5,551	-				+0.1
5,551	-				-0.1
5,558	-				-0.3
5,608	+				+1.1
5,609	+				+1.1
5,610	+				-0.9
5,617	-				-0.1
5,617	-				-0.0
5,630	-				+0.4
5,630	-				-0.2
5,639	-				+0.1
5,673	-				-0.8
5,676	+				+0.1
5,690	+				-0.2
5,705	-				-0.4
5,723	+				+1.1
5,723	+				+1.1
5,731	-				+0.8
5,735	-				-0.7
5,751	-				+0.5
5,751	-				+0.1
5,751	-				-0.1
5,751	-				+0.4
5,751	-				-0.4
5,751	-				+0.6
5,751	-				-0.0
5,783	+				+0.3
5,809	-				-0.5
5,809	-				-0.3
5,815	+				-0.9
5,842	+				-0.9
5,850	-				-0.1
5,850	-				-0.4
5,850	-				-0.4
5,851	+				-0.2
5,851	+				+1.1
5,851	+				+3.1
5,852	+				+1.1
5,856	+				+1.1
5,856	+				+1.1
5,864	-		Shewana3_4146	0.11	+0.3
5,874	+		Shewana3_4146	0.12	+1.1
5,874	+		Shewana3_4146	0.12	+1.1
5,874	+		Shewana3_4146	0.12	+1.1
5,874	+		Shewana3_4146	0.12	-0.9
5,883	-		Shewana3_4146	0.13	-0.2
5,883	-		Shewana3_4146	0.13	+0.3
5,888	+		Shewana3_4146	0.14	-0.2
5,888	+		Shewana3_4146	0.14	+1.1
5,888	+		Shewana3_4146	0.14	-0.1
5,888	+		Shewana3_4146	0.14	+1.1
5,896	-		Shewana3_4146	0.15	-0.0
5,896	-		Shewana3_4146	0.15	-1.1
5,898	+		Shewana3_4146	0.15	+0.9
5,907	-		Shewana3_4146	0.17	+0.0
5,907	-		Shewana3_4146	0.17	-0.4
5,907	-		Shewana3_4146	0.17	+0.4
5,907	-		Shewana3_4146	0.17	+0.4
5,909	+		Shewana3_4146	0.17	+0.3
5,911	-		Shewana3_4146	0.17	-0.1
5,917	-		Shewana3_4146	0.18	+0.5
5,917	-		Shewana3_4146	0.18	+1.1
5,917	-		Shewana3_4146	0.18	-0.1
5,917	-		Shewana3_4146	0.18	-0.1
5,917	-		Shewana3_4146	0.18	+0.4
6,003	+		Shewana3_4146	0.30	-0.5
6,014	+		Shewana3_4146	0.32	-0.9
6,021	-		Shewana3_4146	0.32	-0.7
6,022	-		Shewana3_4146	0.33	-1.2
6,022	-		Shewana3_4146	0.33	-0.6
6,022	-		Shewana3_4146	0.33	-0.6
6,022	-		Shewana3_4146	0.33	-0.3
6,029	+		Shewana3_4146	0.34	-0.4
6,029	+		Shewana3_4146	0.34	-0.9
6,037	-		Shewana3_4146	0.35	-0.0
6,072	+		Shewana3_4146	0.40	-0.5
6,080	+		Shewana3_4146	0.41	+1.3
6,085	+		Shewana3_4146	0.41	+1.3
6,088	-		Shewana3_4146	0.42	-0.0
6,093	-		Shewana3_4146	0.43	+0.0
6,093	-		Shewana3_4146	0.43	-0.6
6,095	+		Shewana3_4146	0.43	+1.1
6,095	+		Shewana3_4146	0.43	+1.1
6,095	+		Shewana3_4146	0.43	-0.3
6,095	+		Shewana3_4146	0.43	-0.5
6,095	+		Shewana3_4146	0.43	+1.3
6,095	+		Shewana3_4146	0.43	+1.1
6,095	+		Shewana3_4146	0.43	+0.1
6,102	-		Shewana3_4146	0.44	+0.1
6,102	-		Shewana3_4146	0.44	+0.2
6,102	-		Shewana3_4146	0.44	-0.6
6,102	-		Shewana3_4146	0.44	-0.1
6,102	-		Shewana3_4146	0.44	-0.2
6,102	-		Shewana3_4146	0.44	-0.4
6,102	-		Shewana3_4146	0.44	-0.7
6,102	-		Shewana3_4146	0.44	-0.2
6,102	-		Shewana3_4146	0.44	-0.2
6,102	-		Shewana3_4146	0.44	+0.3
6,102	-		Shewana3_4146	0.44	+0.4
6,102	-		Shewana3_4146	0.44	+0.1
6,102	-		Shewana3_4146	0.44	-0.7
6,102	-		Shewana3_4146	0.44	-1.2
6,103	-		Shewana3_4146	0.44	-0.7
6,103	-		Shewana3_4146	0.44	-0.6
6,117	-		Shewana3_4146	0.46	-0.0
6,126	+		Shewana3_4146	0.47	+0.1
6,127	-		Shewana3_4146	0.47	+0.1
6,129	+		Shewana3_4146	0.48	+0.5
6,138	-		Shewana3_4146	0.49	+0.2
6,164	+		Shewana3_4146	0.52	+1.1
6,164	+		Shewana3_4146	0.52	-0.5
6,164	+		Shewana3_4146	0.52	+0.4
6,172	-		Shewana3_4146	0.54	+0.4
6,172	-		Shewana3_4146	0.54	+1.1
6,172	-		Shewana3_4146	0.54	-0.5
6,174	+		Shewana3_4146	0.54	+1.1
6,174	+		Shewana3_4146	0.54	+2.1
6,174	+		Shewana3_4146	0.54	-1.8
6,177	-		Shewana3_4146	0.54	-0.4
6,182	-		Shewana3_4146	0.55	-0.1
6,182	-		Shewana3_4146	0.55	-0.9
6,188	+		Shewana3_4146	0.56	+2.1
6,188	+		Shewana3_4146	0.56	-0.9
6,188	+		Shewana3_4146	0.56	+1.1
6,188	+		Shewana3_4146	0.56	+1.1
6,188	+		Shewana3_4146	0.56	-0.3
6,188	+		Shewana3_4146	0.56	+1.1
6,188	+		Shewana3_4146	0.56	+1.1
6,188	+		Shewana3_4146	0.56	+1.1
6,196	-		Shewana3_4146	0.57	-0.3
6,196	-		Shewana3_4146	0.57	-0.4
6,196	-		Shewana3_4146	0.57	+0.0
6,196	-		Shewana3_4146	0.57	-0.7
6,196	-		Shewana3_4146	0.57	-0.9
6,196	-		Shewana3_4146	0.57	-0.3
6,196	-		Shewana3_4146	0.57	+0.2
6,196	-		Shewana3_4146	0.57	-0.7
6,196	-		Shewana3_4146	0.57	+0.2
6,196	-		Shewana3_4146	0.57	-0.1
6,196	-		Shewana3_4146	0.57	-0.9
6,196	-		Shewana3_4146	0.57	+0.5
6,196	-		Shewana3_4146	0.57	+0.9
6,206	-		Shewana3_4146	0.58	-0.7
6,206	-		Shewana3_4146	0.58	-1.6
6,275	-		Shewana3_4146	0.68	-0.7
6,276	+		Shewana3_4146	0.68	-0.5
6,294	+		Shewana3_4146	0.71	-0.5
6,294	+		Shewana3_4146	0.71	+0.1
6,297	-		Shewana3_4146	0.71	-0.7
6,299	+		Shewana3_4146	0.71	+1.1
6,299	+		Shewana3_4146	0.71	-1.4
6,299	+		Shewana3_4146	0.71	+0.3
6,307	-		Shewana3_4146	0.72	-0.2
6,309	+		Shewana3_4146	0.73	+1.1
6,309	+		Shewana3_4146	0.73	+0.7
6,309	+		Shewana3_4146	0.73	+0.1
6,309	+		Shewana3_4146	0.73	-0.5
6,309	+		Shewana3_4146	0.73	+0.1
6,309	+		Shewana3_4146	0.73	+1.1
6,309	+		Shewana3_4146	0.73	+1.1
6,312	-		Shewana3_4146	0.73	-0.5
6,317	-		Shewana3_4146	0.74	-0.7
6,317	-		Shewana3_4146	0.74	-0.1
6,317	-		Shewana3_4146	0.74	-0.1
6,345	+		Shewana3_4146	0.78	+2.6
6,346	+		Shewana3_4146	0.78	+0.1
6,354	+		Shewana3_4146	0.79	+0.1
6,356	+		Shewana3_4146	0.79	+0.0
6,359	+		Shewana3_4146	0.80	+0.3
6,362	-		Shewana3_4146	0.80	+0.9
6,364	-		Shewana3_4146	0.80	+0.2
6,364	-		Shewana3_4146	0.80	-0.0
6,364	-		Shewana3_4146	0.80	+0.5
6,364	-		Shewana3_4146	0.80	-1.6
6,413	+		Shewana3_4146	0.87	-0.6
6,413	+		Shewana3_4146	0.87	-0.5
6,421	-		Shewana3_4146	0.88	-0.3
6,421	-		Shewana3_4146	0.88	-0.4
6,467	+				+0.3
6,467	-				-0.9
6,616	+				-2.5
6,624	-				+0.0
6,671	+				+1.1
6,689	-		Shewana3_4147	0.11	-0.1
6,690	-		Shewana3_4147	0.11	-0.2
6,703	+		Shewana3_4147	0.12	+0.5
6,714	+		Shewana3_4147	0.13	+1.1
6,714	+		Shewana3_4147	0.13	+0.1
6,714	+		Shewana3_4147	0.13	+1.1
6,722	-		Shewana3_4147	0.14	-0.4
6,722	-		Shewana3_4147	0.14	-0.2
6,771	+		Shewana3_4147	0.18	-0.5
6,771	+		Shewana3_4147	0.18	+1.1
6,779	-		Shewana3_4147	0.18	-1.1
6,792	+		Shewana3_4147	0.19	+0.1
6,795	-		Shewana3_4147	0.20	-0.4
6,797	+		Shewana3_4147	0.20	+1.1
6,797	+		Shewana3_4147	0.20	-0.5
6,805	-		Shewana3_4147	0.20	-0.4
6,821	-		Shewana3_4147	0.22	+0.2
6,822	-		Shewana3_4147	0.22	-0.1
6,836	-		Shewana3_4147	0.23	+0.0
6,864	+		Shewana3_4147	0.25	+1.1
6,864	+		Shewana3_4147	0.25	-0.1
6,864	+		Shewana3_4147	0.25	+2.1
6,864	+		Shewana3_4147	0.25	-0.5
6,867	-		Shewana3_4147	0.25	+0.2
6,871	-		Shewana3_4147	0.26	-1.4
6,872	+		Shewana3_4147	0.26	-1.1
6,872	+		Shewana3_4147	0.26	-1.9
6,872	-		Shewana3_4147	0.26	-0.6
6,880	-		Shewana3_4147	0.26	+0.1
6,894	-		Shewana3_4147	0.28	+0.1
6,904	+		Shewana3_4147	0.28	+1.1
6,909	+		Shewana3_4147	0.29	+1.1
6,909	+		Shewana3_4147	0.29	+1.1
6,909	+		Shewana3_4147	0.29	+1.1
6,909	+		Shewana3_4147	0.29	+1.1
6,909	+		Shewana3_4147	0.29	+0.1
6,909	+		Shewana3_4147	0.29	-0.5
6,909	+		Shewana3_4147	0.29	+1.1
6,909	+		Shewana3_4147	0.29	-1.3
6,911	+		Shewana3_4147	0.29	+1.1
6,911	+		Shewana3_4147	0.29	+1.1
6,911	+		Shewana3_4147	0.29	+1.1
6,911	+		Shewana3_4147	0.29	+2.1
6,911	+		Shewana3_4147	0.29	+0.1
6,911	+		Shewana3_4147	0.29	+0.1
6,916	-		Shewana3_4147	0.29	-0.3
6,917	-		Shewana3_4147	0.29	-0.1
6,917	-		Shewana3_4147	0.29	-0.1
6,917	-		Shewana3_4147	0.29	+0.2
6,917	-		Shewana3_4147	0.29	+0.1
6,917	-		Shewana3_4147	0.29	-0.5
6,917	-		Shewana3_4147	0.29	-0.6
6,917	-		Shewana3_4147	0.29	+0.1
6,917	-		Shewana3_4147	0.29	-0.3
6,917	-		Shewana3_4147	0.29	-2.0
6,919	-		Shewana3_4147	0.30	-0.5
6,919	-		Shewana3_4147	0.30	+0.4
6,919	-		Shewana3_4147	0.30	+0.0
6,919	-		Shewana3_4147	0.30	-0.0
6,919	-		Shewana3_4147	0.30	-0.1
6,919	-		Shewana3_4147	0.30	-0.1
6,940	+		Shewana3_4147	0.31	-1.8
6,940	+		Shewana3_4147	0.31	-2.8
6,948	-		Shewana3_4147	0.32	+0.0
6,948	-		Shewana3_4147	0.32	+0.4
6,987	+		Shewana3_4147	0.35	+0.1
6,987	+		Shewana3_4147	0.35	-0.5
6,987	+		Shewana3_4147	0.35	+0.1
6,987	+		Shewana3_4147	0.35	+1.1
6,988	+		Shewana3_4147	0.35	+2.1
6,995	-		Shewana3_4147	0.36	-0.1
6,995	-		Shewana3_4147	0.36	-1.3
6,995	-		Shewana3_4147	0.36	+2.2
6,995	-		Shewana3_4147	0.36	-0.1
6,995	-		Shewana3_4147	0.36	+0.3
6,995	-		Shewana3_4147	0.36	+0.6
6,995	-		Shewana3_4147	0.36	-0.1
6,995	-		Shewana3_4147	0.36	-0.7
6,995	-		Shewana3_4147	0.36	-0.2
6,995	-		Shewana3_4147	0.36	-0.4
6,995	-		Shewana3_4147	0.36	-0.1
7,010	+		Shewana3_4147	0.37	+0.1
7,010	+		Shewana3_4147	0.37	+1.1
7,010	+		Shewana3_4147	0.37	+0.1
7,010	+		Shewana3_4147	0.37	+0.1
7,010	+		Shewana3_4147	0.37	+1.1
7,010	+		Shewana3_4147	0.37	-0.4
7,010	+		Shewana3_4147	0.37	+1.1
7,010	+		Shewana3_4147	0.37	+1.1
7,010	+		Shewana3_4147	0.37	+1.1
7,010	+		Shewana3_4147	0.37	-1.3
7,018	-		Shewana3_4147	0.38	-0.1
7,018	-		Shewana3_4147	0.38	-0.9
7,018	-		Shewana3_4147	0.38	+0.2
7,018	-		Shewana3_4147	0.38	-0.4
7,018	-		Shewana3_4147	0.38	+0.6
7,018	-		Shewana3_4147	0.38	+0.1
7,018	-		Shewana3_4147	0.38	+0.2
7,018	-		Shewana3_4147	0.38	-0.7
7,018	-		Shewana3_4147	0.38	+0.0
7,018	-		Shewana3_4147	0.38	-0.7
7,018	-		Shewana3_4147	0.38	+1.1
7,018	-		Shewana3_4147	0.38	+0.2
7,018	-		Shewana3_4147	0.38	+0.2
7,018	-		Shewana3_4147	0.38	-0.2
7,034	-		Shewana3_4147	0.39	-0.6
7,034	-		Shewana3_4147	0.39	-0.8
7,034	-		Shewana3_4147	0.39	-1.6
7,049	+		Shewana3_4147	0.40	-0.4
7,054	+		Shewana3_4147	0.41	+1.1
7,079	+		Shewana3_4147	0.43	-0.5
7,079	+				+1.1
7,079	+		Shewana3_4147	0.43	-0.1
7,079	+		Shewana3_4147	0.43	+1.3
7,079	+		Shewana3_4147	0.43	+1.1
7,079	+		Shewana3_4147	0.43	+0.8
7,079	+		Shewana3_4147	0.43	+0.5
7,079	+		Shewana3_4147	0.43	+1.1
7,079	+		Shewana3_4147	0.43	+1.1
7,087	-		Shewana3_4147	0.43	-0.2
7,087	-		Shewana3_4147	0.43	+0.2
7,087	-		Shewana3_4147	0.43	+1.5
7,087	-		Shewana3_4147	0.43	-0.1
7,093	+		Shewana3_4147	0.44	+0.1
7,101	+		Shewana3_4147	0.45	+1.1
7,142	+		Shewana3_4147	0.48	-0.7
7,142	+		Shewana3_4147	0.48	+1.1
7,142	+		Shewana3_4147	0.48	+0.1
7,142	+		Shewana3_4147	0.48	+1.1
7,142	+		Shewana3_4147	0.48	+0.7
7,142	+		Shewana3_4147	0.48	+1.1
7,142	+		Shewana3_4147	0.48	+1.1
7,142	+		Shewana3_4147	0.48	+1.1
7,142	+		Shewana3_4147	0.48	-1.6
7,142	+		Shewana3_4147	0.48	+0.1
7,142	+		Shewana3_4147	0.48	+0.1
7,150	-		Shewana3_4147	0.49	-0.5
7,150	-		Shewana3_4147	0.49	+1.4
7,150	-		Shewana3_4147	0.49	-0.9
7,150	-		Shewana3_4147	0.49	-1.3
7,150	-		Shewana3_4147	0.49	-0.5
7,150	-		Shewana3_4147	0.49	+2.1
7,150	-		Shewana3_4147	0.49	-0.5
7,150	-		Shewana3_4147	0.49	-0.9
7,150	-		Shewana3_4147	0.49	+0.1
7,150	-		Shewana3_4147	0.49	+2.1
7,150	-		Shewana3_4147	0.49	-1.0
7,150	-		Shewana3_4147	0.49	+0.4
7,150	-		Shewana3_4147	0.49	-0.4
7,150	-		Shewana3_4147	0.49	-1.5
7,150	-		Shewana3_4147	0.49	+0.1
7,150	-		Shewana3_4147	0.49	+0.5
7,162	-		Shewana3_4147	0.50	+0.4
7,167	-		Shewana3_4147	0.50	-1.5
7,199	-		Shewana3_4147	0.53	-0.8
7,205	+		Shewana3_4147	0.53	+0.1
7,205	+		Shewana3_4147	0.53	+1.1
7,205	+		Shewana3_4147	0.53	+0.6
7,213	-		Shewana3_4147	0.54	+0.2
7,223	-		Shewana3_4147	0.54	+0.5
7,223	-		Shewana3_4147	0.54	-0.2
7,239	-		Shewana3_4147	0.56	+0.1
7,239	-		Shewana3_4147	0.56	+0.3
7,239	-		Shewana3_4147	0.56	+0.5
7,239	-		Shewana3_4147	0.56	-0.4
7,239	-		Shewana3_4147	0.56	-0.4
7,341	-		Shewana3_4147	0.64	-0.8
7,487	+		Shewana3_4147	0.76	+0.3