Experiment: A22 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4141 and Shewana3_4142 are separated by 242 nucleotides
Shewana3_4141: Shewana3_4141 - putative transposase (RefSeq), at 1,030 to 1,248
_4141
Shewana3_4142: Shewana3_4142 - IS4 family transposase (RefSeq), at 1,491 to 2,471
_4142
Position (kb) 1
2 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 0.034 kb on - strand at 0.051 kb on + strand at 0.090 kb on + strand at 0.098 kb on - strand at 0.098 kb on - strand at 0.113 kb on + strand at 0.113 kb on + strand at 0.113 kb on + strand at 0.113 kb on + strand at 0.130 kb on - strand at 0.147 kb on + strand at 0.163 kb on - strand at 0.363 kb on + strand at 0.363 kb on + strand at 0.383 kb on + strand at 0.408 kb on + strand at 0.421 kb on + strand at 0.423 kb on + strand at 0.431 kb on + strand at 0.431 kb on + strand at 0.431 kb on + strand at 0.431 kb on + strand at 0.431 kb on - strand at 0.431 kb on - strand at 0.431 kb on - strand at 0.431 kb on - strand at 0.431 kb on - strand at 0.433 kb on + strand at 0.439 kb on - strand at 0.441 kb on - strand at 0.441 kb on - strand at 0.458 kb on - strand at 0.491 kb on - strand at 0.543 kb on + strand at 0.543 kb on + strand at 0.545 kb on + strand at 0.545 kb on + strand at 0.551 kb on - strand at 0.566 kb on - strand at 0.568 kb on + strand at 0.576 kb on - strand at 0.585 kb on - strand at 0.652 kb on + strand at 0.652 kb on + strand at 0.652 kb on + strand at 0.660 kb on - strand at 0.660 kb on - strand at 0.660 kb on - strand at 0.660 kb on - strand at 0.769 kb on + strand at 0.769 kb on + strand at 0.777 kb on - strand at 0.777 kb on - strand at 0.777 kb on - strand at 0.777 kb on - strand at 0.777 kb on - strand at 0.777 kb on - strand at 0.807 kb on - strand at 0.808 kb on - strand at 0.808 kb on - strand at 0.826 kb on - strand at 0.835 kb on - strand at 0.836 kb on - strand at 0.841 kb on + strand at 0.843 kb on - strand at 0.857 kb on + strand at 0.857 kb on + strand at 0.865 kb on - strand at 0.865 kb on - strand at 0.865 kb on - strand at 0.865 kb on - strand at 0.929 kb on - strand at 0.929 kb on - strand at 0.929 kb on - strand at 0.938 kb on - strand at 0.960 kb on + strand at 0.968 kb on - strand at 0.975 kb on + strand at 0.975 kb on + strand at 0.983 kb on - strand at 0.983 kb on - strand at 0.983 kb on - strand at 0.988 kb on + strand at 0.996 kb on - strand at 0.999 kb on - strand at 1.040 kb on - strand at 1.040 kb on - strand at 1.102 kb on + strand, within Shewana3_4141 at 1.138 kb on - strand, within Shewana3_4141 at 1.138 kb on - strand, within Shewana3_4141 at 1.156 kb on + strand, within Shewana3_4141 at 1.269 kb on + strand at 1.279 kb on + strand at 1.321 kb on - strand at 1.323 kb on + strand at 1.596 kb on - strand, within Shewana3_4142 at 1.689 kb on - strand, within Shewana3_4142 at 1.980 kb on - strand, within Shewana3_4142 at 2.130 kb on - strand, within Shewana3_4142 at 2.130 kb on - strand, within Shewana3_4142 at 2.181 kb on - strand, within Shewana3_4142
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.008 mg/ml remove 34 - +1.1 51 + +1.1 90 + +0.7 98 - +1.1 98 - -0.5 113 + +1.4 113 + -0.9 113 + +0.1 113 + +1.1 130 - +0.1 147 + +1.1 163 - -0.5 363 + +1.1 363 + +0.1 383 + -0.9 408 + -2.1 421 + -0.9 423 + +1.1 431 + +1.1 431 + -1.3 431 + +1.1 431 + +0.1 431 - +1.1 431 - +1.1 431 - +1.1 431 - +1.1 431 - -0.5 433 + +1.1 439 - +1.1 441 - +1.1 441 - +0.1 458 - +0.1 491 - -0.9 543 + +1.1 543 + +1.1 545 + +1.1 545 + -1.3 551 - -0.9 566 - -0.9 568 + +1.1 576 - -0.2 585 - +0.1 652 + +1.1 652 + +0.7 652 + +1.1 660 - +1.3 660 - -0.7 660 - +0.1 660 - +1.1 769 + +1.1 769 + +0.9 777 - +1.1 777 - -1.9 777 - +1.1 777 - +1.1 777 - -1.1 777 - -0.7 807 - +0.3 808 - +0.5 808 - +1.1 826 - +1.1 835 - -0.5 836 - -3.1 841 + +1.1 843 - +1.1 857 + -1.3 857 + +0.2 865 - -0.1 865 - +1.1 865 - -0.5 865 - +0.7 929 - +0.0 929 - +0.7 929 - -1.7 938 - +0.1 960 + -1.7 968 - -0.7 975 + +0.1 975 + +1.1 983 - -0.0 983 - +0.2 983 - -0.9 988 + +1.5 996 - +0.6 999 - +0.1 1,040 - -1.6 1,040 - +0.8 1,102 + Shewana3_4141 0.33 -0.3 1,138 - Shewana3_4141 0.49 -0.3 1,138 - Shewana3_4141 0.49 +0.3 1,156 + Shewana3_4141 0.58 -0.4 1,269 + +1.1 1,279 + +1.1 1,321 - +0.1 1,323 + -1.5 1,596 - Shewana3_4142 0.11 +0.5 1,689 - Shewana3_4142 0.20 -0.4 1,980 - Shewana3_4142 0.50 -1.3 2,130 - Shewana3_4142 0.65 -0.2 2,130 - Shewana3_4142 0.65 +1.1 2,181 - Shewana3_4142 0.70 -0.1
Or see this region's nucleotide sequence