Experiment: MoYLS4 with Nitrite 0.125mg/mL + Zinc Sulfate 0.1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0622 and nrfH are separated by 342 nucleotides nrfH and nrfA overlap by 8 nucleotides
DVU0622: DVU0622 - sensor histidine kinase/response regulator (TIGR), at 688,231 to 690,729
DVU0622
DVU0624: nrfH - NapC/NirT cytochrome c family protein (TIGR), at 691,072 to 691,551
nrfH
DVU0625: nrfA - cytochrome c nitrite reductase, catalytic subunit NrfA, putative (Shelley Haveman), at 691,544 to 693,118
nrfA
Position (kb) 691
692 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 690.092 kb on + strand, within DVU0622 at 690.092 kb on + strand, within DVU0622 at 690.138 kb on + strand, within DVU0622 at 690.165 kb on - strand, within DVU0622 at 690.194 kb on + strand, within DVU0622 at 690.275 kb on - strand, within DVU0622 at 690.434 kb on + strand, within DVU0622 at 690.442 kb on - strand, within DVU0622 at 690.565 kb on + strand at 690.579 kb on + strand at 690.614 kb on - strand at 690.652 kb on + strand at 690.652 kb on + strand at 690.660 kb on - strand at 690.674 kb on + strand at 690.679 kb on + strand at 690.714 kb on + strand at 690.722 kb on - strand at 690.722 kb on - strand at 690.722 kb on - strand at 690.727 kb on - strand at 690.966 kb on - strand at 691.029 kb on + strand at 691.213 kb on - strand, within nrfH at 691.221 kb on - strand, within nrfH at 691.311 kb on + strand, within nrfH at 691.337 kb on - strand, within nrfH at 691.402 kb on + strand, within nrfH at 691.415 kb on + strand, within nrfH at 691.424 kb on - strand, within nrfH at 691.424 kb on - strand, within nrfH at 691.431 kb on + strand, within nrfH at 691.465 kb on + strand, within nrfH at 691.481 kb on - strand, within nrfH at 691.498 kb on + strand, within nrfH at 691.498 kb on + strand, within nrfH at 691.503 kb on + strand, within nrfH at 691.506 kb on - strand at 691.569 kb on - strand at 691.774 kb on - strand, within nrfA at 691.779 kb on - strand, within nrfA at 691.823 kb on + strand, within nrfA at 691.855 kb on + strand, within nrfA at 691.863 kb on - strand, within nrfA at 691.908 kb on - strand, within nrfA at 691.990 kb on + strand, within nrfA at 691.990 kb on + strand, within nrfA at 692.016 kb on + strand, within nrfA at 692.018 kb on + strand, within nrfA at 692.120 kb on + strand, within nrfA at 692.120 kb on + strand, within nrfA at 692.127 kb on + strand, within nrfA at 692.127 kb on + strand, within nrfA at 692.135 kb on - strand, within nrfA at 692.135 kb on - strand, within nrfA at 692.137 kb on - strand, within nrfA at 692.187 kb on - strand, within nrfA at 692.230 kb on - strand, within nrfA at 692.246 kb on + strand, within nrfA at 692.335 kb on + strand, within nrfA at 692.402 kb on - strand, within nrfA at 692.455 kb on + strand, within nrfA at 692.515 kb on - strand, within nrfA
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Nitrite 0.125mg/mL + Zinc Sulfate 0.1mM remove 690,092 + DVU0622 0.74 -0.2 690,092 + DVU0622 0.74 +0.1 690,138 + DVU0622 0.76 +0.5 690,165 - DVU0622 0.77 -1.3 690,194 + DVU0622 0.79 -0.1 690,275 - DVU0622 0.82 -0.1 690,434 + DVU0622 0.88 +0.6 690,442 - DVU0622 0.88 +1.9 690,565 + +0.0 690,579 + -0.5 690,614 - -0.6 690,652 + -0.3 690,652 + -0.1 690,660 - -0.9 690,674 + +0.4 690,679 + +0.3 690,714 + +0.8 690,722 - +0.0 690,722 - +0.5 690,722 - -0.4 690,727 - -0.7 690,966 - -0.6 691,029 + -0.9 691,213 - nrfH DVU0624 0.29 -4.9 691,221 - nrfH DVU0624 0.31 -4.0 691,311 + nrfH DVU0624 0.50 -3.7 691,337 - nrfH DVU0624 0.55 -4.6 691,402 + nrfH DVU0624 0.69 -4.0 691,415 + nrfH DVU0624 0.71 +0.5 691,424 - nrfH DVU0624 0.73 -5.4 691,424 - nrfH DVU0624 0.73 -6.3 691,431 + nrfH DVU0624 0.75 -3.8 691,465 + nrfH DVU0624 0.82 -2.3 691,481 - nrfH DVU0624 0.85 -4.4 691,498 + nrfH DVU0624 0.89 -2.4 691,498 + nrfH DVU0624 0.89 -2.1 691,503 + nrfH DVU0624 0.90 -0.9 691,506 - -5.0 691,569 - -0.8 691,774 - nrfA DVU0625 0.15 -3.4 691,779 - nrfA DVU0625 0.15 -2.5 691,823 + nrfA DVU0625 0.18 -2.7 691,855 + nrfA DVU0625 0.20 -5.4 691,863 - nrfA DVU0625 0.20 -1.6 691,908 - nrfA DVU0625 0.23 -4.4 691,990 + nrfA DVU0625 0.28 -3.6 691,990 + nrfA DVU0625 0.28 -1.9 692,016 + nrfA DVU0625 0.30 -4.8 692,018 + nrfA DVU0625 0.30 -4.8 692,120 + nrfA DVU0625 0.37 -4.1 692,120 + nrfA DVU0625 0.37 -3.3 692,127 + nrfA DVU0625 0.37 -5.9 692,127 + nrfA DVU0625 0.37 -4.0 692,135 - nrfA DVU0625 0.38 -2.5 692,135 - nrfA DVU0625 0.38 -4.5 692,137 - nrfA DVU0625 0.38 -2.9 692,187 - nrfA DVU0625 0.41 -2.5 692,230 - nrfA DVU0625 0.44 -3.1 692,246 + nrfA DVU0625 0.45 -3.7 692,335 + nrfA DVU0625 0.50 -6.0 692,402 - nrfA DVU0625 0.54 -1.3 692,455 + nrfA DVU0625 0.58 -4.6 692,515 - nrfA DVU0625 0.62 -2.9
Or see this region's nucleotide sequence