Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5830 and Pf1N1B4_5831 are separated by 354 nucleotides Pf1N1B4_5831 and Pf1N1B4_5832 are separated by 144 nucleotides
Pf1N1B4_5830 - FIG023677: hypothetical protein, at 264,386 to 265,153
_5830
Pf1N1B4_5831 - SAM-dependent methyltransferases, at 265,508 to 266,557
_5831
Pf1N1B4_5832 - LysR family transcriptional regulator near succinyl-CoA:3-ketoacid-coenzyme A transferase, at 266,702 to 267,601
_5832
Position (kb) 265
266
267 Strain fitness (log2 ratio) -2
-1
0
1 at 264.672 kb on + strand, within Pf1N1B4_5830 at 264.771 kb on + strand, within Pf1N1B4_5830 at 264.883 kb on - strand, within Pf1N1B4_5830 at 264.906 kb on + strand at 264.924 kb on + strand, within Pf1N1B4_5830 at 264.925 kb on - strand, within Pf1N1B4_5830 at 265.359 kb on - strand at 265.359 kb on - strand at 265.378 kb on - strand at 265.384 kb on - strand at 265.384 kb on - strand at 265.384 kb on - strand at 265.802 kb on + strand, within Pf1N1B4_5831 at 265.802 kb on + strand, within Pf1N1B4_5831 at 265.950 kb on - strand, within Pf1N1B4_5831 at 266.108 kb on + strand, within Pf1N1B4_5831 at 266.217 kb on - strand, within Pf1N1B4_5831 at 266.231 kb on + strand at 266.231 kb on + strand, within Pf1N1B4_5831 at 266.285 kb on + strand, within Pf1N1B4_5831 at 266.286 kb on - strand, within Pf1N1B4_5831 at 266.381 kb on + strand, within Pf1N1B4_5831 at 266.382 kb on - strand, within Pf1N1B4_5831 at 266.398 kb on + strand, within Pf1N1B4_5831 at 266.399 kb on - strand, within Pf1N1B4_5831 at 266.552 kb on - strand at 266.556 kb on - strand at 267.026 kb on - strand, within Pf1N1B4_5832 at 267.120 kb on + strand, within Pf1N1B4_5832 at 267.121 kb on - strand, within Pf1N1B4_5832 at 267.173 kb on + strand, within Pf1N1B4_5832
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 264,672 + Pf1N1B4_5830 0.37 +0.6 264,771 + Pf1N1B4_5830 0.50 -0.1 264,883 - Pf1N1B4_5830 0.65 -0.7 264,906 + -0.1 264,924 + Pf1N1B4_5830 0.70 +0.2 264,925 - Pf1N1B4_5830 0.70 -0.6 265,359 - +0.9 265,359 - -0.1 265,378 - +0.4 265,384 - -1.1 265,384 - +0.5 265,384 - -0.1 265,802 + Pf1N1B4_5831 0.28 +1.2 265,802 + Pf1N1B4_5831 0.28 -0.1 265,950 - Pf1N1B4_5831 0.42 +1.7 266,108 + Pf1N1B4_5831 0.57 +0.9 266,217 - Pf1N1B4_5831 0.68 -0.1 266,231 + -2.1 266,231 + Pf1N1B4_5831 0.69 -0.1 266,285 + Pf1N1B4_5831 0.74 -0.1 266,286 - Pf1N1B4_5831 0.74 +0.4 266,381 + Pf1N1B4_5831 0.83 -0.8 266,382 - Pf1N1B4_5831 0.83 +0.5 266,398 + Pf1N1B4_5831 0.85 +1.5 266,399 - Pf1N1B4_5831 0.85 -0.1 266,552 - -0.1 266,556 - +0.5 267,026 - Pf1N1B4_5832 0.36 -0.5 267,120 + Pf1N1B4_5832 0.46 -2.7 267,121 - Pf1N1B4_5832 0.47 -0.1 267,173 + Pf1N1B4_5832 0.52 -0.1
Or see this region's nucleotide sequence