Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_3723 and Pf1N1B4_3724 are separated by 61 nucleotides
Pf1N1B4_3723 - FIG00957314: hypothetical protein, at 4,130,190 to 4,130,441
_3723
Pf1N1B4_3724 - DNA recombination protein RmuC, at 4,130,503 to 4,131,981
_3724
Position (kb)
4130
4131 Strain fitness (log2 ratio)
-2
-1
0
1 at 4129.288 kb on - strand at 4129.288 kb on - strand at 4129.288 kb on - strand at 4129.292 kb on - strand at 4129.292 kb on - strand at 4129.292 kb on - strand at 4129.292 kb on - strand at 4129.292 kb on - strand at 4129.292 kb on - strand at 4129.292 kb on - strand at 4129.292 kb on - strand at 4129.292 kb on - strand at 4129.292 kb on - strand at 4129.296 kb on - strand at 4129.296 kb on - strand at 4129.296 kb on - strand at 4129.296 kb on - strand at 4129.296 kb on - strand at 4129.296 kb on - strand at 4129.296 kb on - strand at 4129.296 kb on - strand at 4129.296 kb on - strand at 4129.296 kb on - strand at 4129.296 kb on - strand at 4129.381 kb on - strand at 4129.381 kb on - strand at 4129.381 kb on - strand at 4129.543 kb on + strand at 4129.544 kb on - strand at 4129.544 kb on - strand at 4130.031 kb on - strand at 4130.081 kb on - strand at 4130.271 kb on - strand, within Pf1N1B4_3723 at 4130.323 kb on + strand, within Pf1N1B4_3723 at 4130.324 kb on - strand, within Pf1N1B4_3723 at 4130.568 kb on - strand at 4131.094 kb on + strand, within Pf1N1B4_3724 at 4131.094 kb on + strand, within Pf1N1B4_3724 at 4131.095 kb on - strand, within Pf1N1B4_3724 at 4131.095 kb on - strand, within Pf1N1B4_3724 at 4131.095 kb on - strand, within Pf1N1B4_3724 at 4131.345 kb on + strand, within Pf1N1B4_3724 at 4131.345 kb on + strand, within Pf1N1B4_3724 at 4131.345 kb on + strand, within Pf1N1B4_3724 at 4131.345 kb on + strand, within Pf1N1B4_3724 at 4131.350 kb on - strand at 4131.412 kb on + strand, within Pf1N1B4_3724 at 4131.412 kb on + strand, within Pf1N1B4_3724 at 4131.412 kb on + strand, within Pf1N1B4_3724 at 4131.412 kb on + strand, within Pf1N1B4_3724 at 4131.412 kb on + strand, within Pf1N1B4_3724 at 4131.412 kb on + strand, within Pf1N1B4_3724 at 4131.412 kb on + strand, within Pf1N1B4_3724 at 4131.412 kb on + strand, within Pf1N1B4_3724 at 4131.413 kb on - strand at 4131.413 kb on - strand, within Pf1N1B4_3724
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 4,129,288 - -0.3 4,129,288 - +1.3 4,129,288 - +0.0 4,129,292 - -0.5 4,129,292 - -1.7 4,129,292 - -0.5 4,129,292 - -0.1 4,129,292 - -0.1 4,129,292 - -0.1 4,129,292 - -0.7 4,129,292 - -0.4 4,129,292 - -0.1 4,129,292 - -1.7 4,129,296 - +0.5 4,129,296 - +0.6 4,129,296 - +0.7 4,129,296 - +0.1 4,129,296 - -0.8 4,129,296 - -0.1 4,129,296 - +0.4 4,129,296 - +0.0 4,129,296 - -0.3 4,129,296 - -1.1 4,129,296 - -0.4 4,129,381 - -0.9 4,129,381 - -0.9 4,129,381 - -1.7 4,129,543 + -0.1 4,129,544 - -0.1 4,129,544 - +0.2 4,130,031 - +0.1 4,130,081 - -1.5 4,130,271 - Pf1N1B4_3723 0.32 -0.6 4,130,323 + Pf1N1B4_3723 0.53 -2.1 4,130,324 - Pf1N1B4_3723 0.53 -1.9 4,130,568 - -0.9 4,131,094 + Pf1N1B4_3724 0.40 +0.4 4,131,094 + Pf1N1B4_3724 0.40 -0.7 4,131,095 - Pf1N1B4_3724 0.40 -1.7 4,131,095 - Pf1N1B4_3724 0.40 -0.1 4,131,095 - Pf1N1B4_3724 0.40 -0.1 4,131,345 + Pf1N1B4_3724 0.57 +0.3 4,131,345 + Pf1N1B4_3724 0.57 +0.9 4,131,345 + Pf1N1B4_3724 0.57 +1.5 4,131,345 + Pf1N1B4_3724 0.57 -0.1 4,131,350 - -0.1 4,131,412 + Pf1N1B4_3724 0.61 +0.6 4,131,412 + Pf1N1B4_3724 0.61 -1.9 4,131,412 + Pf1N1B4_3724 0.61 +0.3 4,131,412 + Pf1N1B4_3724 0.61 -0.8 4,131,412 + Pf1N1B4_3724 0.61 -0.3 4,131,412 + Pf1N1B4_3724 0.61 +0.9 4,131,412 + Pf1N1B4_3724 0.61 +0.6 4,131,412 + Pf1N1B4_3724 0.61 -0.1 4,131,413 - +0.9 4,131,413 - Pf1N1B4_3724 0.62 -0.1
Or see this region's nucleotide sequence