Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2990

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_2989 and Pf1N1B4_2990 overlap by 4 nucleotidesPf1N1B4_2990 and Pf1N1B4_2991 are separated by 42 nucleotidesPf1N1B4_2991 and Pf1N1B4_2992 are separated by 100 nucleotidesPf1N1B4_2992 and Pf1N1B4_2993 are separated by 154 nucleotides Pf1N1B4_2989 - NAD-dependent formate dehydrogenase beta subunit, at 3,357,859 to 3,359,421 _2989 Pf1N1B4_2990 - NAD-dependent formate dehydrogenase gamma subunit, at 3,359,418 to 3,359,894 _2990 Pf1N1B4_2991 - hypothetical protein, at 3,359,937 to 3,360,206 _2991 Pf1N1B4_2992 - Potassium channel protein, at 3,360,307 to 3,360,648 _2992 Pf1N1B4_2993 - hypothetical protein, at 3,360,803 to 3,361,132 _2993 Position (kb) 3359 3360Strain fitness (log2 ratio) -2 -1 0 1 2at 3358.617 kb on + strand, within Pf1N1B4_2989at 3358.617 kb on + strand, within Pf1N1B4_2989at 3358.617 kb on + strand, within Pf1N1B4_2989at 3358.617 kb on + strandat 3358.617 kb on + strand, within Pf1N1B4_2989at 3358.617 kb on + strand, within Pf1N1B4_2989at 3358.618 kb on - strand, within Pf1N1B4_2989at 3358.618 kb on - strand, within Pf1N1B4_2989at 3358.618 kb on - strand, within Pf1N1B4_2989at 3358.618 kb on - strand, within Pf1N1B4_2989at 3358.618 kb on - strand, within Pf1N1B4_2989at 3358.618 kb on - strand, within Pf1N1B4_2989at 3358.619 kb on + strand, within Pf1N1B4_2989at 3358.619 kb on + strand, within Pf1N1B4_2989at 3358.619 kb on + strand, within Pf1N1B4_2989at 3358.619 kb on + strand, within Pf1N1B4_2989at 3358.619 kb on + strand, within Pf1N1B4_2989at 3358.619 kb on + strand, within Pf1N1B4_2989at 3358.619 kb on + strand, within Pf1N1B4_2989at 3358.620 kb on - strand, within Pf1N1B4_2989at 3358.620 kb on - strand, within Pf1N1B4_2989at 3358.620 kb on - strand, within Pf1N1B4_2989at 3358.620 kb on - strand, within Pf1N1B4_2989at 3358.620 kb on - strand, within Pf1N1B4_2989at 3358.620 kb on - strand, within Pf1N1B4_2989at 3358.620 kb on - strand, within Pf1N1B4_2989at 3358.620 kb on - strand, within Pf1N1B4_2989at 3358.620 kb on - strand, within Pf1N1B4_2989at 3358.746 kb on - strand, within Pf1N1B4_2989at 3358.760 kb on + strand, within Pf1N1B4_2989at 3358.760 kb on + strand, within Pf1N1B4_2989at 3358.760 kb on + strand, within Pf1N1B4_2989at 3358.760 kb on + strandat 3358.760 kb on + strand, within Pf1N1B4_2989at 3358.760 kb on + strand, within Pf1N1B4_2989at 3358.760 kb on + strand, within Pf1N1B4_2989at 3358.760 kb on + strand, within Pf1N1B4_2989at 3358.760 kb on + strand, within Pf1N1B4_2989at 3358.760 kb on + strand, within Pf1N1B4_2989at 3358.760 kb on + strand, within Pf1N1B4_2989at 3358.760 kb on + strand, within Pf1N1B4_2989at 3358.761 kb on - strand, within Pf1N1B4_2989at 3358.761 kb on - strand, within Pf1N1B4_2989at 3358.761 kb on - strand, within Pf1N1B4_2989at 3358.761 kb on - strand, within Pf1N1B4_2989at 3358.761 kb on - strand, within Pf1N1B4_2989at 3358.761 kb on - strand, within Pf1N1B4_2989at 3358.761 kb on - strandat 3358.761 kb on - strand, within Pf1N1B4_2989at 3358.761 kb on - strand, within Pf1N1B4_2989at 3358.761 kb on - strand, within Pf1N1B4_2989at 3358.761 kb on - strand, within Pf1N1B4_2989at 3358.761 kb on - strand, within Pf1N1B4_2989at 3358.761 kb on - strand, within Pf1N1B4_2989at 3358.761 kb on - strand, within Pf1N1B4_2989at 3358.766 kb on + strand, within Pf1N1B4_2989at 3358.766 kb on + strand, within Pf1N1B4_2989at 3358.766 kb on + strand, within Pf1N1B4_2989at 3358.766 kb on + strand, within Pf1N1B4_2989at 3358.766 kb on + strand, within Pf1N1B4_2989at 3358.766 kb on + strand, within Pf1N1B4_2989at 3358.766 kb on + strand, within Pf1N1B4_2989at 3358.766 kb on + strand, within Pf1N1B4_2989at 3358.772 kb on + strand, within Pf1N1B4_2989at 3358.772 kb on + strand, within Pf1N1B4_2989at 3358.773 kb on - strand, within Pf1N1B4_2989at 3358.773 kb on - strand, within Pf1N1B4_2989at 3358.895 kb on + strand, within Pf1N1B4_2989at 3358.895 kb on + strandat 3358.896 kb on - strand, within Pf1N1B4_2989at 3358.896 kb on - strand, within Pf1N1B4_2989at 3358.896 kb on - strand, within Pf1N1B4_2989at 3358.896 kb on - strandat 3358.896 kb on - strand, within Pf1N1B4_2989at 3358.896 kb on - strand, within Pf1N1B4_2989at 3358.896 kb on - strand, within Pf1N1B4_2989at 3358.896 kb on - strand, within Pf1N1B4_2989at 3358.896 kb on - strand, within Pf1N1B4_2989at 3358.896 kb on - strand, within Pf1N1B4_2989at 3358.896 kb on - strand, within Pf1N1B4_2989at 3358.896 kb on - strand, within Pf1N1B4_2989at 3359.405 kb on + strandat 3359.406 kb on - strandat 3359.406 kb on - strandat 3359.406 kb on - strandat 3359.533 kb on + strand, within Pf1N1B4_2990at 3359.533 kb on + strand, within Pf1N1B4_2990at 3359.533 kb on + strand, within Pf1N1B4_2990at 3359.534 kb on - strand, within Pf1N1B4_2990at 3359.534 kb on - strand, within Pf1N1B4_2990at 3359.534 kb on - strand, within Pf1N1B4_2990at 3359.666 kb on + strand, within Pf1N1B4_2990at 3359.666 kb on + strand, within Pf1N1B4_2990at 3359.701 kb on + strand, within Pf1N1B4_2990at 3359.701 kb on + strand, within Pf1N1B4_2990at 3359.701 kb on + strand, within Pf1N1B4_2990at 3359.701 kb on + strand, within Pf1N1B4_2990at 3359.702 kb on - strand, within Pf1N1B4_2990at 3359.702 kb on - strand, within Pf1N1B4_2990at 3359.702 kb on - strand, within Pf1N1B4_2990at 3359.702 kb on - strand, within Pf1N1B4_2990at 3359.702 kb on - strand, within Pf1N1B4_2990at 3359.702 kb on - strand, within Pf1N1B4_2990at 3359.702 kb on - strandat 3359.702 kb on - strand, within Pf1N1B4_2990at 3359.702 kb on - strand, within Pf1N1B4_2990at 3359.702 kb on - strand, within Pf1N1B4_2990at 3359.702 kb on - strand, within Pf1N1B4_2990at 3359.782 kb on + strand, within Pf1N1B4_2990at 3359.782 kb on + strand, within Pf1N1B4_2990at 3359.782 kb on + strandat 3359.868 kb on - strandat 3359.894 kb on + strandat 3359.894 kb on + strandat 3359.894 kb on + strandat 3359.895 kb on - strandat 3359.895 kb on - strandat 3359.895 kb on - strandat 3360.068 kb on + strand, within Pf1N1B4_2991at 3360.145 kb on + strand, within Pf1N1B4_2991at 3360.145 kb on + strand, within Pf1N1B4_2991at 3360.146 kb on - strand, within Pf1N1B4_2991at 3360.146 kb on - strand, within Pf1N1B4_2991at 3360.146 kb on - strand, within Pf1N1B4_2991at 3360.146 kb on - strand, within Pf1N1B4_2991at 3360.146 kb on - strand, within Pf1N1B4_2991at 3360.151 kb on + strand, within Pf1N1B4_2991at 3360.151 kb on + strand, within Pf1N1B4_2991at 3360.151 kb on + strand, within Pf1N1B4_2991at 3360.151 kb on + strand, within Pf1N1B4_2991at 3360.152 kb on - strand, within Pf1N1B4_2991at 3360.186 kb on + strandat 3360.186 kb on + strandat 3360.186 kb on + strandat 3360.186 kb on + strandat 3360.197 kb on + strandat 3360.198 kb on - strandat 3360.252 kb on - strandat 3360.287 kb on - strandat 3360.346 kb on + strand, within Pf1N1B4_2992at 3360.347 kb on - strand, within Pf1N1B4_2992at 3360.347 kb on - strand, within Pf1N1B4_2992at 3360.347 kb on - strandat 3360.347 kb on - strand, within Pf1N1B4_2992at 3360.347 kb on - strand, within Pf1N1B4_2992at 3360.364 kb on + strand, within Pf1N1B4_2992at 3360.364 kb on + strand, within Pf1N1B4_2992at 3360.365 kb on - strand, within Pf1N1B4_2992at 3360.365 kb on - strand, within Pf1N1B4_2992at 3360.365 kb on - strand, within Pf1N1B4_2992at 3360.365 kb on - strand, within Pf1N1B4_2992at 3360.365 kb on - strand, within Pf1N1B4_2992at 3360.469 kb on + strand, within Pf1N1B4_2992at 3360.469 kb on + strand, within Pf1N1B4_2992at 3360.469 kb on + strand, within Pf1N1B4_2992at 3360.469 kb on + strand, within Pf1N1B4_2992at 3360.469 kb on + strand, within Pf1N1B4_2992at 3360.469 kb on + strand, within Pf1N1B4_2992at 3360.469 kb on + strand, within Pf1N1B4_2992at 3360.469 kb on + strand, within Pf1N1B4_2992at 3360.470 kb on - strand, within Pf1N1B4_2992at 3360.470 kb on - strand, within Pf1N1B4_2992at 3360.470 kb on - strand, within Pf1N1B4_2992at 3360.470 kb on - strand, within Pf1N1B4_2992at 3360.470 kb on - strand, within Pf1N1B4_2992at 3360.470 kb on - strand, within Pf1N1B4_2992at 3360.470 kb on - strand, within Pf1N1B4_2992at 3360.470 kb on - strand, within Pf1N1B4_2992at 3360.584 kb on + strand, within Pf1N1B4_2992at 3360.585 kb on - strand, within Pf1N1B4_2992at 3360.646 kb on + strandat 3360.646 kb on + strandat 3360.646 kb on + strandat 3360.646 kb on + strandat 3360.722 kb on + strandat 3360.722 kb on + strandat 3360.787 kb on - strandat 3360.829 kb on + strandat 3360.830 kb on - strandat 3360.830 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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3,358,617 + Pf1N1B4_2989 0.48 -2.0
3,358,617 + Pf1N1B4_2989 0.48 +0.4
3,358,617 + Pf1N1B4_2989 0.48 -1.0
3,358,617 + +1.0
3,358,617 + Pf1N1B4_2989 0.48 +0.5
3,358,617 + Pf1N1B4_2989 0.48 +0.8
3,358,618 - Pf1N1B4_2989 0.49 -2.0
3,358,618 - Pf1N1B4_2989 0.49 +0.0
3,358,618 - Pf1N1B4_2989 0.49 +2.0
3,358,618 - Pf1N1B4_2989 0.49 -0.3
3,358,618 - Pf1N1B4_2989 0.49 -0.6
3,358,618 - Pf1N1B4_2989 0.49 +0.0
3,358,619 + Pf1N1B4_2989 0.49 -0.6
3,358,619 + Pf1N1B4_2989 0.49 -1.0
3,358,619 + Pf1N1B4_2989 0.49 +1.2
3,358,619 + Pf1N1B4_2989 0.49 +0.3
3,358,619 + Pf1N1B4_2989 0.49 -1.8
3,358,619 + Pf1N1B4_2989 0.49 +0.0
3,358,619 + Pf1N1B4_2989 0.49 -1.0
3,358,620 - Pf1N1B4_2989 0.49 -1.0
3,358,620 - Pf1N1B4_2989 0.49 +0.4
3,358,620 - Pf1N1B4_2989 0.49 +0.2
3,358,620 - Pf1N1B4_2989 0.49 +0.4
3,358,620 - Pf1N1B4_2989 0.49 +0.6
3,358,620 - Pf1N1B4_2989 0.49 +0.2
3,358,620 - Pf1N1B4_2989 0.49 +0.4
3,358,620 - Pf1N1B4_2989 0.49 -0.6
3,358,620 - Pf1N1B4_2989 0.49 -0.4
3,358,746 - Pf1N1B4_2989 0.57 +0.4
3,358,760 + Pf1N1B4_2989 0.58 +0.0
3,358,760 + Pf1N1B4_2989 0.58 -1.1
3,358,760 + Pf1N1B4_2989 0.58 +0.0
3,358,760 + +1.6
3,358,760 + Pf1N1B4_2989 0.58 -0.7
3,358,760 + Pf1N1B4_2989 0.58 +0.8
3,358,760 + Pf1N1B4_2989 0.58 -1.0
3,358,760 + Pf1N1B4_2989 0.58 -0.4
3,358,760 + Pf1N1B4_2989 0.58 +1.6
3,358,760 + Pf1N1B4_2989 0.58 +0.3
3,358,760 + Pf1N1B4_2989 0.58 +1.0
3,358,760 + Pf1N1B4_2989 0.58 -0.2
3,358,761 - Pf1N1B4_2989 0.58 +1.2
3,358,761 - Pf1N1B4_2989 0.58 +1.0
3,358,761 - Pf1N1B4_2989 0.58 -0.6
3,358,761 - Pf1N1B4_2989 0.58 +0.5
3,358,761 - Pf1N1B4_2989 0.58 -0.3
3,358,761 - Pf1N1B4_2989 0.58 -1.4
3,358,761 - -1.0
3,358,761 - Pf1N1B4_2989 0.58 -1.0
3,358,761 - Pf1N1B4_2989 0.58 +0.2
3,358,761 - Pf1N1B4_2989 0.58 -0.2
3,358,761 - Pf1N1B4_2989 0.58 -2.0
3,358,761 - Pf1N1B4_2989 0.58 -0.4
3,358,761 - Pf1N1B4_2989 0.58 +1.2
3,358,761 - Pf1N1B4_2989 0.58 +1.0
3,358,766 + Pf1N1B4_2989 0.58 -1.6
3,358,766 + Pf1N1B4_2989 0.58 -1.4
3,358,766 + Pf1N1B4_2989 0.58 -2.0
3,358,766 + Pf1N1B4_2989 0.58 -0.6
3,358,766 + Pf1N1B4_2989 0.58 +0.0
3,358,766 + Pf1N1B4_2989 0.58 -0.8
3,358,766 + Pf1N1B4_2989 0.58 -0.7
3,358,766 + Pf1N1B4_2989 0.58 -1.2
3,358,772 + Pf1N1B4_2989 0.58 +0.0
3,358,772 + Pf1N1B4_2989 0.58 -1.6
3,358,773 - Pf1N1B4_2989 0.58 +0.0
3,358,773 - Pf1N1B4_2989 0.58 +0.0
3,358,895 + Pf1N1B4_2989 0.66 +0.0
3,358,895 + -0.6
3,358,896 - Pf1N1B4_2989 0.66 -0.9
3,358,896 - Pf1N1B4_2989 0.66 +1.6
3,358,896 - Pf1N1B4_2989 0.66 +1.0
3,358,896 - -1.0
3,358,896 - Pf1N1B4_2989 0.66 -0.7
3,358,896 - Pf1N1B4_2989 0.66 +1.2
3,358,896 - Pf1N1B4_2989 0.66 +0.0
3,358,896 - Pf1N1B4_2989 0.66 +0.5
3,358,896 - Pf1N1B4_2989 0.66 +0.0
3,358,896 - Pf1N1B4_2989 0.66 +0.0
3,358,896 - Pf1N1B4_2989 0.66 +0.0
3,358,896 - Pf1N1B4_2989 0.66 +0.0
3,359,405 + +0.4
3,359,406 - -2.3
3,359,406 - -0.4
3,359,406 - -0.1
3,359,533 + Pf1N1B4_2990 0.24 -0.6
3,359,533 + Pf1N1B4_2990 0.24 -2.0
3,359,533 + Pf1N1B4_2990 0.24 +0.9
3,359,534 - Pf1N1B4_2990 0.24 -0.2
3,359,534 - Pf1N1B4_2990 0.24 -0.6
3,359,534 - Pf1N1B4_2990 0.24 -2.0
3,359,666 + Pf1N1B4_2990 0.52 +0.4
3,359,666 + Pf1N1B4_2990 0.52 +0.0
3,359,701 + Pf1N1B4_2990 0.59 +1.0
3,359,701 + Pf1N1B4_2990 0.59 -1.3
3,359,701 + Pf1N1B4_2990 0.59 -0.9
3,359,701 + Pf1N1B4_2990 0.59 -0.6
3,359,702 - Pf1N1B4_2990 0.60 -1.8
3,359,702 - Pf1N1B4_2990 0.60 -1.0
3,359,702 - Pf1N1B4_2990 0.60 -0.2
3,359,702 - Pf1N1B4_2990 0.60 +0.0
3,359,702 - Pf1N1B4_2990 0.60 -2.0
3,359,702 - Pf1N1B4_2990 0.60 +1.6
3,359,702 - +0.0
3,359,702 - Pf1N1B4_2990 0.60 +0.6
3,359,702 - Pf1N1B4_2990 0.60 +0.8
3,359,702 - Pf1N1B4_2990 0.60 +0.0
3,359,702 - Pf1N1B4_2990 0.60 +1.0
3,359,782 + Pf1N1B4_2990 0.76 +0.0
3,359,782 + Pf1N1B4_2990 0.76 +0.0
3,359,782 + +0.0
3,359,868 - +0.0
3,359,894 + +0.4
3,359,894 + -1.0
3,359,894 + -0.6
3,359,895 - +0.4
3,359,895 - +0.6
3,359,895 - +1.7
3,360,068 + Pf1N1B4_2991 0.49 +0.0
3,360,145 + Pf1N1B4_2991 0.77 -0.2
3,360,145 + Pf1N1B4_2991 0.77 -0.1
3,360,146 - Pf1N1B4_2991 0.77 +0.3
3,360,146 - Pf1N1B4_2991 0.77 -1.4
3,360,146 - Pf1N1B4_2991 0.77 +0.6
3,360,146 - Pf1N1B4_2991 0.77 +1.0
3,360,146 - Pf1N1B4_2991 0.77 -0.6
3,360,151 + Pf1N1B4_2991 0.79 +0.0
3,360,151 + Pf1N1B4_2991 0.79 -0.4
3,360,151 + Pf1N1B4_2991 0.79 +0.6
3,360,151 + Pf1N1B4_2991 0.79 -1.3
3,360,152 - Pf1N1B4_2991 0.80 -0.5
3,360,186 + -0.4
3,360,186 + -0.7
3,360,186 + +2.3
3,360,186 + +0.0
3,360,197 + -0.2
3,360,198 - -1.6
3,360,252 - +0.0
3,360,287 - -0.7
3,360,346 + Pf1N1B4_2992 0.11 +0.0
3,360,347 - Pf1N1B4_2992 0.12 +1.0
3,360,347 - Pf1N1B4_2992 0.12 -1.1
3,360,347 - +0.0
3,360,347 - Pf1N1B4_2992 0.12 -1.2
3,360,347 - Pf1N1B4_2992 0.12 -2.0
3,360,364 + Pf1N1B4_2992 0.17 -1.0
3,360,364 + Pf1N1B4_2992 0.17 -1.6
3,360,365 - Pf1N1B4_2992 0.17 -2.3
3,360,365 - Pf1N1B4_2992 0.17 +0.0
3,360,365 - Pf1N1B4_2992 0.17 -2.3
3,360,365 - Pf1N1B4_2992 0.17 -2.0
3,360,365 - Pf1N1B4_2992 0.17 -1.0
3,360,469 + Pf1N1B4_2992 0.47 +0.0
3,360,469 + Pf1N1B4_2992 0.47 -0.2
3,360,469 + Pf1N1B4_2992 0.47 -1.6
3,360,469 + Pf1N1B4_2992 0.47 -1.0
3,360,469 + Pf1N1B4_2992 0.47 +0.4
3,360,469 + Pf1N1B4_2992 0.47 +0.9
3,360,469 + Pf1N1B4_2992 0.47 -0.6
3,360,469 + Pf1N1B4_2992 0.47 +0.0
3,360,470 - Pf1N1B4_2992 0.48 +0.3
3,360,470 - Pf1N1B4_2992 0.48 -1.6
3,360,470 - Pf1N1B4_2992 0.48 +0.5
3,360,470 - Pf1N1B4_2992 0.48 +0.6
3,360,470 - Pf1N1B4_2992 0.48 +0.0
3,360,470 - Pf1N1B4_2992 0.48 -1.3
3,360,470 - Pf1N1B4_2992 0.48 +1.6
3,360,470 - Pf1N1B4_2992 0.48 +0.6
3,360,584 + Pf1N1B4_2992 0.81 -1.0
3,360,585 - Pf1N1B4_2992 0.81 -0.6
3,360,646 + +1.0
3,360,646 + +0.0
3,360,646 + +0.6
3,360,646 + +0.7
3,360,722 + -0.6
3,360,722 + +0.0
3,360,787 - +1.0
3,360,829 + -1.2
3,360,830 - +0.4
3,360,830 - -0.6

Or see this region's nucleotide sequence