Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1674

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1672 and Pf1N1B4_1673 are separated by 91 nucleotidesPf1N1B4_1673 and Pf1N1B4_1674 overlap by 4 nucleotidesPf1N1B4_1674 and Pf1N1B4_1675 are separated by 124 nucleotides Pf1N1B4_1672 - Hydrogen peroxide-inducible genes activator, at 1,915,286 to 1,916,173 _1672 Pf1N1B4_1673 - Formate dehydrogenase chain D (EC 1.2.1.2), at 1,916,265 to 1,917,104 _1673 Pf1N1B4_1674 - Putative formate dehydrogenase oxidoreductase protein, at 1,917,101 to 1,919,449 _1674 Pf1N1B4_1675 - Transcriptional regulator, at 1,919,574 to 1,920,494 _1675 Position (kb) 1917 1918 1919 1920Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1916.104 kb on + strandat 1916.147 kb on + strandat 1916.147 kb on + strandat 1916.147 kb on + strandat 1916.147 kb on + strandat 1916.148 kb on - strandat 1916.148 kb on - strandat 1916.148 kb on - strandat 1916.148 kb on - strandat 1916.148 kb on - strandat 1916.148 kb on - strandat 1916.148 kb on - strandat 1916.186 kb on - strandat 1916.200 kb on - strandat 1916.202 kb on + strandat 1916.202 kb on + strandat 1916.202 kb on + strandat 1916.202 kb on + strandat 1916.233 kb on - strandat 1916.233 kb on - strandat 1916.233 kb on - strandat 1916.239 kb on - strandat 1916.239 kb on - strandat 1916.239 kb on - strandat 1916.334 kb on + strandat 1916.334 kb on + strandat 1916.334 kb on + strandat 1916.334 kb on + strandat 1916.334 kb on + strandat 1916.334 kb on + strandat 1916.334 kb on + strandat 1916.335 kb on - strandat 1916.335 kb on - strandat 1916.340 kb on + strandat 1916.355 kb on + strand, within Pf1N1B4_1673at 1916.355 kb on + strand, within Pf1N1B4_1673at 1916.355 kb on + strand, within Pf1N1B4_1673at 1916.355 kb on + strand, within Pf1N1B4_1673at 1916.355 kb on + strand, within Pf1N1B4_1673at 1916.355 kb on + strand, within Pf1N1B4_1673at 1916.356 kb on - strand, within Pf1N1B4_1673at 1916.356 kb on - strand, within Pf1N1B4_1673at 1916.356 kb on - strand, within Pf1N1B4_1673at 1916.356 kb on - strand, within Pf1N1B4_1673at 1916.356 kb on - strand, within Pf1N1B4_1673at 1916.356 kb on - strand, within Pf1N1B4_1673at 1916.409 kb on + strand, within Pf1N1B4_1673at 1916.409 kb on + strand, within Pf1N1B4_1673at 1916.409 kb on + strand, within Pf1N1B4_1673at 1916.409 kb on + strand, within Pf1N1B4_1673at 1916.409 kb on + strand, within Pf1N1B4_1673at 1916.410 kb on - strand, within Pf1N1B4_1673at 1916.410 kb on - strand, within Pf1N1B4_1673at 1916.410 kb on - strand, within Pf1N1B4_1673at 1916.410 kb on - strand, within Pf1N1B4_1673at 1916.410 kb on - strand, within Pf1N1B4_1673at 1916.513 kb on + strand, within Pf1N1B4_1673at 1916.517 kb on + strand, within Pf1N1B4_1673at 1916.517 kb on + strand, within Pf1N1B4_1673at 1916.517 kb on + strand, within Pf1N1B4_1673at 1916.518 kb on - strand, within Pf1N1B4_1673at 1916.518 kb on - strand, within Pf1N1B4_1673at 1916.518 kb on - strand, within Pf1N1B4_1673at 1916.518 kb on - strand, within Pf1N1B4_1673at 1916.518 kb on - strand, within Pf1N1B4_1673at 1916.554 kb on - strand, within Pf1N1B4_1673at 1916.554 kb on - strand, within Pf1N1B4_1673at 1916.554 kb on - strand, within Pf1N1B4_1673at 1916.554 kb on - strand, within Pf1N1B4_1673at 1916.780 kb on - strand, within Pf1N1B4_1673at 1916.986 kb on + strand, within Pf1N1B4_1673at 1917.075 kb on + strandat 1917.076 kb on - strandat 1917.076 kb on - strandat 1917.152 kb on + strandat 1917.152 kb on + strandat 1917.152 kb on + strandat 1917.153 kb on - strandat 1917.153 kb on - strandat 1917.240 kb on + strandat 1917.241 kb on - strandat 1917.340 kb on + strand, within Pf1N1B4_1674at 1917.400 kb on + strand, within Pf1N1B4_1674at 1917.400 kb on + strand, within Pf1N1B4_1674at 1917.400 kb on + strand, within Pf1N1B4_1674at 1917.401 kb on - strand, within Pf1N1B4_1674at 1917.401 kb on - strand, within Pf1N1B4_1674at 1917.401 kb on - strand, within Pf1N1B4_1674at 1917.401 kb on - strand, within Pf1N1B4_1674at 1917.443 kb on + strand, within Pf1N1B4_1674at 1917.443 kb on + strand, within Pf1N1B4_1674at 1917.444 kb on - strand, within Pf1N1B4_1674at 1917.444 kb on - strand, within Pf1N1B4_1674at 1917.473 kb on + strand, within Pf1N1B4_1674at 1917.473 kb on + strand, within Pf1N1B4_1674at 1917.473 kb on + strand, within Pf1N1B4_1674at 1917.473 kb on + strand, within Pf1N1B4_1674at 1917.473 kb on + strand, within Pf1N1B4_1674at 1917.473 kb on + strand, within Pf1N1B4_1674at 1917.473 kb on + strand, within Pf1N1B4_1674at 1917.473 kb on + strand, within Pf1N1B4_1674at 1917.474 kb on - strand, within Pf1N1B4_1674at 1917.474 kb on - strand, within Pf1N1B4_1674at 1917.474 kb on - strand, within Pf1N1B4_1674at 1917.474 kb on - strand, within Pf1N1B4_1674at 1917.474 kb on - strand, within Pf1N1B4_1674at 1917.474 kb on - strand, within Pf1N1B4_1674at 1917.578 kb on + strand, within Pf1N1B4_1674at 1917.578 kb on + strand, within Pf1N1B4_1674at 1917.578 kb on + strand, within Pf1N1B4_1674at 1917.579 kb on - strand, within Pf1N1B4_1674at 1917.579 kb on - strand, within Pf1N1B4_1674at 1917.618 kb on - strand, within Pf1N1B4_1674at 1917.954 kb on - strand, within Pf1N1B4_1674at 1917.954 kb on - strand, within Pf1N1B4_1674at 1918.103 kb on + strand, within Pf1N1B4_1674at 1918.103 kb on + strand, within Pf1N1B4_1674at 1918.103 kb on + strand, within Pf1N1B4_1674at 1918.104 kb on - strand, within Pf1N1B4_1674at 1918.193 kb on + strand, within Pf1N1B4_1674at 1918.193 kb on + strand, within Pf1N1B4_1674at 1918.193 kb on + strand, within Pf1N1B4_1674at 1918.193 kb on + strand, within Pf1N1B4_1674at 1918.193 kb on + strand, within Pf1N1B4_1674at 1918.193 kb on + strand, within Pf1N1B4_1674at 1918.194 kb on - strand, within Pf1N1B4_1674at 1918.194 kb on - strand, within Pf1N1B4_1674at 1918.555 kb on + strand, within Pf1N1B4_1674at 1918.556 kb on - strand, within Pf1N1B4_1674at 1918.634 kb on - strand, within Pf1N1B4_1674at 1918.674 kb on + strand, within Pf1N1B4_1674at 1918.859 kb on + strand, within Pf1N1B4_1674at 1918.860 kb on - strand, within Pf1N1B4_1674at 1918.943 kb on + strand, within Pf1N1B4_1674at 1918.944 kb on - strand, within Pf1N1B4_1674at 1919.028 kb on + strand, within Pf1N1B4_1674at 1919.028 kb on + strand, within Pf1N1B4_1674at 1919.028 kb on + strand, within Pf1N1B4_1674at 1919.028 kb on + strand, within Pf1N1B4_1674at 1919.028 kb on + strand, within Pf1N1B4_1674at 1919.028 kb on + strand, within Pf1N1B4_1674at 1919.028 kb on + strand, within Pf1N1B4_1674at 1919.028 kb on + strand, within Pf1N1B4_1674at 1919.028 kb on + strand, within Pf1N1B4_1674at 1919.028 kb on + strand, within Pf1N1B4_1674at 1919.028 kb on + strand, within Pf1N1B4_1674at 1919.029 kb on - strand, within Pf1N1B4_1674at 1919.029 kb on - strand, within Pf1N1B4_1674at 1919.029 kb on - strand, within Pf1N1B4_1674at 1919.029 kb on - strand, within Pf1N1B4_1674at 1919.029 kb on - strand, within Pf1N1B4_1674at 1919.029 kb on - strand, within Pf1N1B4_1674at 1919.029 kb on - strand, within Pf1N1B4_1674at 1919.029 kb on - strand, within Pf1N1B4_1674at 1919.029 kb on - strand, within Pf1N1B4_1674at 1919.029 kb on - strand, within Pf1N1B4_1674at 1919.029 kb on - strand, within Pf1N1B4_1674at 1919.029 kb on - strand, within Pf1N1B4_1674at 1919.102 kb on + strandat 1919.102 kb on + strand, within Pf1N1B4_1674at 1919.102 kb on + strand, within Pf1N1B4_1674at 1919.103 kb on - strand, within Pf1N1B4_1674at 1919.103 kb on - strand, within Pf1N1B4_1674at 1919.103 kb on - strand, within Pf1N1B4_1674at 1919.117 kb on + strand, within Pf1N1B4_1674at 1919.117 kb on + strandat 1919.118 kb on - strand, within Pf1N1B4_1674at 1919.118 kb on - strand, within Pf1N1B4_1674at 1919.118 kb on - strand, within Pf1N1B4_1674at 1919.315 kb on + strandat 1919.315 kb on + strandat 1919.315 kb on + strandat 1919.316 kb on - strandat 1919.316 kb on - strandat 1919.316 kb on - strandat 1919.318 kb on + strandat 1919.371 kb on + strandat 1919.371 kb on + strandat 1919.372 kb on - strandat 1919.505 kb on + strandat 1919.505 kb on + strandat 1919.505 kb on + strandat 1919.911 kb on + strand, within Pf1N1B4_1675at 1919.911 kb on + strand, within Pf1N1B4_1675at 1919.911 kb on + strand, within Pf1N1B4_1675at 1919.912 kb on - strand, within Pf1N1B4_1675at 1919.912 kb on - strand, within Pf1N1B4_1675at 1919.912 kb on - strand, within Pf1N1B4_1675at 1919.912 kb on - strand, within Pf1N1B4_1675

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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1,916,104 + -2.0
1,916,147 + +0.0
1,916,147 + +0.6
1,916,147 + +1.4
1,916,147 + -1.0
1,916,148 - -1.5
1,916,148 - -0.5
1,916,148 - +0.0
1,916,148 - -1.0
1,916,148 - -0.5
1,916,148 - -1.0
1,916,148 - -0.4
1,916,186 - +0.6
1,916,200 - -2.5
1,916,202 + -1.0
1,916,202 + -1.5
1,916,202 + +0.0
1,916,202 + +0.1
1,916,233 - +0.5
1,916,233 - -0.6
1,916,233 - +0.0
1,916,239 - -1.5
1,916,239 - -0.4
1,916,239 - +0.0
1,916,334 + +0.0
1,916,334 + -1.5
1,916,334 + -1.0
1,916,334 + -1.4
1,916,334 + -1.3
1,916,334 + +0.0
1,916,334 + -1.7
1,916,335 - -2.4
1,916,335 - +1.0
1,916,340 + -0.5
1,916,355 + Pf1N1B4_1673 0.11 -0.7
1,916,355 + Pf1N1B4_1673 0.11 -0.4
1,916,355 + Pf1N1B4_1673 0.11 -1.0
1,916,355 + Pf1N1B4_1673 0.11 -2.3
1,916,355 + Pf1N1B4_1673 0.11 -1.8
1,916,355 + Pf1N1B4_1673 0.11 -1.2
1,916,356 - Pf1N1B4_1673 0.11 -2.8
1,916,356 - Pf1N1B4_1673 0.11 -1.5
1,916,356 - Pf1N1B4_1673 0.11 -2.2
1,916,356 - Pf1N1B4_1673 0.11 -0.7
1,916,356 - Pf1N1B4_1673 0.11 +0.6
1,916,356 - Pf1N1B4_1673 0.11 -1.4
1,916,409 + Pf1N1B4_1673 0.17 -1.2
1,916,409 + Pf1N1B4_1673 0.17 -1.5
1,916,409 + Pf1N1B4_1673 0.17 -2.3
1,916,409 + Pf1N1B4_1673 0.17 +0.0
1,916,409 + Pf1N1B4_1673 0.17 +0.0
1,916,410 - Pf1N1B4_1673 0.17 +0.0
1,916,410 - Pf1N1B4_1673 0.17 -2.5
1,916,410 - Pf1N1B4_1673 0.17 -1.3
1,916,410 - Pf1N1B4_1673 0.17 +0.0
1,916,410 - Pf1N1B4_1673 0.17 -0.7
1,916,513 + Pf1N1B4_1673 0.30 +0.3
1,916,517 + Pf1N1B4_1673 0.30 -1.5
1,916,517 + Pf1N1B4_1673 0.30 +0.0
1,916,517 + Pf1N1B4_1673 0.30 +0.0
1,916,518 - Pf1N1B4_1673 0.30 +1.0
1,916,518 - Pf1N1B4_1673 0.30 -1.3
1,916,518 - Pf1N1B4_1673 0.30 -1.5
1,916,518 - Pf1N1B4_1673 0.30 -1.5
1,916,518 - Pf1N1B4_1673 0.30 -2.8
1,916,554 - Pf1N1B4_1673 0.34 -1.3
1,916,554 - Pf1N1B4_1673 0.34 +0.6
1,916,554 - Pf1N1B4_1673 0.34 -0.5
1,916,554 - Pf1N1B4_1673 0.34 -1.4
1,916,780 - Pf1N1B4_1673 0.61 -2.3
1,916,986 + Pf1N1B4_1673 0.86 -2.4
1,917,075 + -1.5
1,917,076 - +1.4
1,917,076 - -2.0
1,917,152 + +0.0
1,917,152 + -1.4
1,917,152 + -2.3
1,917,153 - +0.6
1,917,153 - +1.6
1,917,240 + +1.0
1,917,241 - +1.0
1,917,340 + Pf1N1B4_1674 0.10 -0.8
1,917,400 + Pf1N1B4_1674 0.13 +0.0
1,917,400 + Pf1N1B4_1674 0.13 -1.0
1,917,400 + Pf1N1B4_1674 0.13 -0.4
1,917,401 - Pf1N1B4_1674 0.13 -2.0
1,917,401 - Pf1N1B4_1674 0.13 -2.5
1,917,401 - Pf1N1B4_1674 0.13 +0.0
1,917,401 - Pf1N1B4_1674 0.13 +0.0
1,917,443 + Pf1N1B4_1674 0.15 -1.0
1,917,443 + Pf1N1B4_1674 0.15 -0.4
1,917,444 - Pf1N1B4_1674 0.15 +0.0
1,917,444 - Pf1N1B4_1674 0.15 -1.5
1,917,473 + Pf1N1B4_1674 0.16 +0.0
1,917,473 + Pf1N1B4_1674 0.16 -1.8
1,917,473 + Pf1N1B4_1674 0.16 -1.4
1,917,473 + Pf1N1B4_1674 0.16 -1.0
1,917,473 + Pf1N1B4_1674 0.16 -1.0
1,917,473 + Pf1N1B4_1674 0.16 -0.4
1,917,473 + Pf1N1B4_1674 0.16 -0.5
1,917,473 + Pf1N1B4_1674 0.16 -1.2
1,917,474 - Pf1N1B4_1674 0.16 -0.4
1,917,474 - Pf1N1B4_1674 0.16 +2.0
1,917,474 - Pf1N1B4_1674 0.16 -0.4
1,917,474 - Pf1N1B4_1674 0.16 -0.7
1,917,474 - Pf1N1B4_1674 0.16 -1.0
1,917,474 - Pf1N1B4_1674 0.16 -0.8
1,917,578 + Pf1N1B4_1674 0.20 -0.8
1,917,578 + Pf1N1B4_1674 0.20 -1.3
1,917,578 + Pf1N1B4_1674 0.20 -0.8
1,917,579 - Pf1N1B4_1674 0.20 -1.5
1,917,579 - Pf1N1B4_1674 0.20 -1.0
1,917,618 - Pf1N1B4_1674 0.22 -0.2
1,917,954 - Pf1N1B4_1674 0.36 -2.8
1,917,954 - Pf1N1B4_1674 0.36 -1.1
1,918,103 + Pf1N1B4_1674 0.43 +0.0
1,918,103 + Pf1N1B4_1674 0.43 -0.9
1,918,103 + Pf1N1B4_1674 0.43 +1.6
1,918,104 - Pf1N1B4_1674 0.43 -1.1
1,918,193 + Pf1N1B4_1674 0.46 -1.5
1,918,193 + Pf1N1B4_1674 0.46 -2.5
1,918,193 + Pf1N1B4_1674 0.46 +1.0
1,918,193 + Pf1N1B4_1674 0.46 -1.8
1,918,193 + Pf1N1B4_1674 0.46 -1.5
1,918,193 + Pf1N1B4_1674 0.46 -2.0
1,918,194 - Pf1N1B4_1674 0.47 -1.3
1,918,194 - Pf1N1B4_1674 0.47 -3.3
1,918,555 + Pf1N1B4_1674 0.62 -2.3
1,918,556 - Pf1N1B4_1674 0.62 -1.3
1,918,634 - Pf1N1B4_1674 0.65 -0.8
1,918,674 + Pf1N1B4_1674 0.67 -1.0
1,918,859 + Pf1N1B4_1674 0.75 -2.3
1,918,860 - Pf1N1B4_1674 0.75 -1.0
1,918,943 + Pf1N1B4_1674 0.78 -1.8
1,918,944 - Pf1N1B4_1674 0.78 +1.0
1,919,028 + Pf1N1B4_1674 0.82 -2.0
1,919,028 + Pf1N1B4_1674 0.82 -1.1
1,919,028 + Pf1N1B4_1674 0.82 -0.5
1,919,028 + Pf1N1B4_1674 0.82 -1.5
1,919,028 + Pf1N1B4_1674 0.82 -0.5
1,919,028 + Pf1N1B4_1674 0.82 +0.5
1,919,028 + Pf1N1B4_1674 0.82 +0.0
1,919,028 + Pf1N1B4_1674 0.82 -1.5
1,919,028 + Pf1N1B4_1674 0.82 -1.1
1,919,028 + Pf1N1B4_1674 0.82 -1.0
1,919,028 + Pf1N1B4_1674 0.82 -1.0
1,919,029 - Pf1N1B4_1674 0.82 -1.3
1,919,029 - Pf1N1B4_1674 0.82 +0.6
1,919,029 - Pf1N1B4_1674 0.82 -2.0
1,919,029 - Pf1N1B4_1674 0.82 -0.4
1,919,029 - Pf1N1B4_1674 0.82 -2.0
1,919,029 - Pf1N1B4_1674 0.82 -1.1
1,919,029 - Pf1N1B4_1674 0.82 +0.0
1,919,029 - Pf1N1B4_1674 0.82 -2.0
1,919,029 - Pf1N1B4_1674 0.82 +0.0
1,919,029 - Pf1N1B4_1674 0.82 -2.3
1,919,029 - Pf1N1B4_1674 0.82 -0.7
1,919,029 - Pf1N1B4_1674 0.82 -1.0
1,919,102 + -0.5
1,919,102 + Pf1N1B4_1674 0.85 -1.0
1,919,102 + Pf1N1B4_1674 0.85 +1.0
1,919,103 - Pf1N1B4_1674 0.85 -0.2
1,919,103 - Pf1N1B4_1674 0.85 -2.0
1,919,103 - Pf1N1B4_1674 0.85 -2.1
1,919,117 + Pf1N1B4_1674 0.86 +1.4
1,919,117 + +0.0
1,919,118 - Pf1N1B4_1674 0.86 -1.0
1,919,118 - Pf1N1B4_1674 0.86 -1.0
1,919,118 - Pf1N1B4_1674 0.86 -2.3
1,919,315 + -1.7
1,919,315 + -1.4
1,919,315 + -1.2
1,919,316 - +0.0
1,919,316 - -0.7
1,919,316 - -1.2
1,919,318 + -1.5
1,919,371 + +0.6
1,919,371 + -1.8
1,919,372 - +0.5
1,919,505 + -0.4
1,919,505 + +0.5
1,919,505 + -1.5
1,919,911 + Pf1N1B4_1675 0.37 -1.5
1,919,911 + Pf1N1B4_1675 0.37 +0.6
1,919,911 + Pf1N1B4_1675 0.37 +0.4
1,919,912 - Pf1N1B4_1675 0.37 -0.7
1,919,912 - Pf1N1B4_1675 0.37 -0.6
1,919,912 - Pf1N1B4_1675 0.37 -1.0
1,919,912 - Pf1N1B4_1675 0.37 +0.6

Or see this region's nucleotide sequence