Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_1583 and Pf1N1B4_1584 overlap by 4 nucleotides Pf1N1B4_1584 and Pf1N1B4_1585 are separated by 71 nucleotides Pf1N1B4_1585 and Pf1N1B4_1586 are separated by 68 nucleotides
Pf1N1B4_1583 - Histidine ABC transporter, ATP-binding protein (TC 3.A.1), at 1,824,291 to 1,825,121
_1583
Pf1N1B4_1584 - Histidine ABC transporter, permease protein (TC 3.A.1), at 1,825,118 to 1,825,969
_1584
Pf1N1B4_1585 - Histidine ABC transporter, histidine-binding protein (TC 3.A.1), at 1,826,041 to 1,827,009
_1585
Pf1N1B4_1586 - Purine-cytosine permease, at 1,827,078 to 1,828,550
_1586
Position (kb)
1826
1827
1828 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 1825.149 kb on + strand at 1825.149 kb on + strand at 1825.150 kb on - strand at 1825.159 kb on + strand at 1825.479 kb on + strand, within Pf1N1B4_1584 at 1825.480 kb on - strand, within Pf1N1B4_1584 at 1825.545 kb on + strand, within Pf1N1B4_1584 at 1825.896 kb on + strand at 1825.952 kb on - strand at 1825.969 kb on + strand at 1826.042 kb on + strand at 1826.042 kb on + strand at 1826.042 kb on + strand at 1826.043 kb on - strand at 1826.043 kb on - strand at 1826.043 kb on - strand at 1826.043 kb on - strand at 1826.348 kb on + strand, within Pf1N1B4_1585 at 1826.349 kb on - strand, within Pf1N1B4_1585 at 1826.351 kb on + strand, within Pf1N1B4_1585 at 1826.351 kb on + strand, within Pf1N1B4_1585 at 1826.351 kb on + strand, within Pf1N1B4_1585 at 1826.352 kb on - strand, within Pf1N1B4_1585 at 1826.352 kb on - strand, within Pf1N1B4_1585 at 1826.352 kb on - strand, within Pf1N1B4_1585 at 1826.352 kb on - strand, within Pf1N1B4_1585 at 1826.352 kb on - strand, within Pf1N1B4_1585 at 1826.352 kb on - strand, within Pf1N1B4_1585 at 1826.378 kb on + strand, within Pf1N1B4_1585 at 1826.378 kb on + strand, within Pf1N1B4_1585 at 1826.378 kb on + strand, within Pf1N1B4_1585 at 1826.379 kb on - strand, within Pf1N1B4_1585 at 1826.379 kb on - strand, within Pf1N1B4_1585 at 1826.379 kb on - strand, within Pf1N1B4_1585 at 1826.379 kb on - strand, within Pf1N1B4_1585 at 1826.435 kb on + strand, within Pf1N1B4_1585 at 1826.435 kb on + strand, within Pf1N1B4_1585 at 1826.435 kb on + strand, within Pf1N1B4_1585 at 1826.436 kb on - strand, within Pf1N1B4_1585 at 1826.436 kb on - strand, within Pf1N1B4_1585 at 1826.436 kb on - strand, within Pf1N1B4_1585 at 1826.453 kb on + strand, within Pf1N1B4_1585 at 1826.454 kb on - strand, within Pf1N1B4_1585 at 1826.454 kb on - strand, within Pf1N1B4_1585 at 1826.454 kb on - strand, within Pf1N1B4_1585 at 1826.510 kb on + strand, within Pf1N1B4_1585 at 1826.511 kb on - strand, within Pf1N1B4_1585 at 1826.511 kb on - strand, within Pf1N1B4_1585 at 1826.558 kb on + strand, within Pf1N1B4_1585 at 1826.558 kb on + strand, within Pf1N1B4_1585 at 1826.558 kb on + strand, within Pf1N1B4_1585 at 1826.558 kb on + strand, within Pf1N1B4_1585 at 1826.559 kb on - strand, within Pf1N1B4_1585 at 1826.559 kb on - strand, within Pf1N1B4_1585 at 1826.559 kb on - strand, within Pf1N1B4_1585 at 1826.559 kb on - strand, within Pf1N1B4_1585 at 1826.559 kb on - strand, within Pf1N1B4_1585 at 1826.649 kb on - strand, within Pf1N1B4_1585 at 1826.649 kb on - strand, within Pf1N1B4_1585 at 1826.649 kb on - strand, within Pf1N1B4_1585 at 1826.649 kb on - strand, within Pf1N1B4_1585 at 1826.649 kb on - strand, within Pf1N1B4_1585 at 1826.831 kb on + strand, within Pf1N1B4_1585 at 1827.024 kb on - strand at 1827.024 kb on - strand at 1827.024 kb on - strand at 1827.024 kb on - strand at 1827.116 kb on + strand at 1827.117 kb on - strand at 1827.117 kb on - strand at 1827.117 kb on - strand at 1827.117 kb on - strand at 1827.117 kb on - strand at 1827.117 kb on - strand at 1827.123 kb on + strand at 1827.123 kb on + strand at 1827.123 kb on + strand at 1827.124 kb on - strand at 1827.124 kb on - strand at 1827.124 kb on - strand at 1827.124 kb on - strand at 1827.124 kb on - strand at 1827.124 kb on - strand at 1827.124 kb on - strand at 1827.124 kb on - strand at 1827.124 kb on - strand at 1827.124 kb on - strand at 1827.124 kb on - strand at 1827.124 kb on - strand at 1827.124 kb on - strand at 1827.196 kb on + strand at 1827.196 kb on + strand at 1827.196 kb on + strand at 1827.196 kb on + strand at 1827.196 kb on + strand at 1827.196 kb on + strand at 1827.197 kb on - strand at 1827.197 kb on - strand at 1827.197 kb on - strand at 1827.197 kb on - strand at 1827.197 kb on - strand at 1827.197 kb on - strand at 1827.197 kb on - strand at 1827.197 kb on - strand at 1827.197 kb on - strand at 1827.197 kb on - strand at 1827.197 kb on - strand at 1827.197 kb on - strand at 1827.197 kb on - strand at 1827.197 kb on - strand at 1827.197 kb on - strand at 1827.197 kb on - strand at 1827.199 kb on + strand at 1827.199 kb on + strand at 1827.199 kb on + strand at 1827.199 kb on + strand at 1827.200 kb on - strand at 1827.200 kb on - strand at 1827.200 kb on - strand at 1827.200 kb on - strand at 1827.200 kb on - strand at 1827.200 kb on - strand at 1827.200 kb on - strand at 1827.200 kb on - strand at 1827.200 kb on - strand at 1827.239 kb on + strand, within Pf1N1B4_1586 at 1827.239 kb on + strand, within Pf1N1B4_1586 at 1827.240 kb on - strand, within Pf1N1B4_1586 at 1827.277 kb on + strand, within Pf1N1B4_1586 at 1827.277 kb on + strand, within Pf1N1B4_1586 at 1827.277 kb on + strand, within Pf1N1B4_1586 at 1827.277 kb on + strand, within Pf1N1B4_1586 at 1827.278 kb on - strand, within Pf1N1B4_1586 at 1827.278 kb on - strand, within Pf1N1B4_1586 at 1827.278 kb on - strand, within Pf1N1B4_1586 at 1827.278 kb on - strand, within Pf1N1B4_1586 at 1827.278 kb on - strand, within Pf1N1B4_1586 at 1827.278 kb on - strand, within Pf1N1B4_1586 at 1827.278 kb on - strand, within Pf1N1B4_1586 at 1827.278 kb on - strand, within Pf1N1B4_1586 at 1827.278 kb on - strand, within Pf1N1B4_1586 at 1827.278 kb on - strand, within Pf1N1B4_1586 at 1827.278 kb on - strand, within Pf1N1B4_1586 at 1827.325 kb on + strand, within Pf1N1B4_1586 at 1827.325 kb on + strand, within Pf1N1B4_1586 at 1827.325 kb on + strand, within Pf1N1B4_1586 at 1827.325 kb on + strand, within Pf1N1B4_1586 at 1827.325 kb on + strand, within Pf1N1B4_1586 at 1827.325 kb on + strand at 1827.325 kb on + strand, within Pf1N1B4_1586 at 1827.325 kb on + strand, within Pf1N1B4_1586 at 1827.325 kb on + strand, within Pf1N1B4_1586 at 1827.325 kb on + strand at 1827.326 kb on - strand, within Pf1N1B4_1586 at 1827.326 kb on - strand, within Pf1N1B4_1586 at 1827.326 kb on - strand, within Pf1N1B4_1586 at 1827.326 kb on - strand, within Pf1N1B4_1586 at 1827.326 kb on - strand, within Pf1N1B4_1586 at 1827.326 kb on - strand, within Pf1N1B4_1586 at 1827.326 kb on - strand, within Pf1N1B4_1586 at 1827.326 kb on - strand, within Pf1N1B4_1586 at 1827.326 kb on - strand, within Pf1N1B4_1586 at 1827.326 kb on - strand, within Pf1N1B4_1586 at 1827.326 kb on - strand, within Pf1N1B4_1586 at 1827.326 kb on - strand, within Pf1N1B4_1586 at 1827.326 kb on - strand, within Pf1N1B4_1586 at 1827.326 kb on - strand, within Pf1N1B4_1586 at 1827.326 kb on - strand, within Pf1N1B4_1586 at 1827.326 kb on - strand, within Pf1N1B4_1586 at 1827.326 kb on - strand, within Pf1N1B4_1586 at 1827.326 kb on - strand, within Pf1N1B4_1586 at 1827.326 kb on - strand, within Pf1N1B4_1586 at 1827.326 kb on - strand, within Pf1N1B4_1586 at 1827.395 kb on - strand, within Pf1N1B4_1586 at 1827.415 kb on + strand, within Pf1N1B4_1586 at 1827.416 kb on - strand, within Pf1N1B4_1586 at 1827.416 kb on - strand, within Pf1N1B4_1586 at 1827.416 kb on - strand, within Pf1N1B4_1586 at 1827.416 kb on - strand, within Pf1N1B4_1586 at 1827.416 kb on - strand, within Pf1N1B4_1586 at 1827.416 kb on - strand, within Pf1N1B4_1586 at 1827.416 kb on - strand, within Pf1N1B4_1586 at 1827.416 kb on - strand, within Pf1N1B4_1586 at 1827.418 kb on + strand, within Pf1N1B4_1586 at 1827.419 kb on - strand, within Pf1N1B4_1586 at 1827.419 kb on - strand, within Pf1N1B4_1586 at 1827.419 kb on - strand, within Pf1N1B4_1586 at 1827.419 kb on - strand, within Pf1N1B4_1586 at 1827.419 kb on - strand, within Pf1N1B4_1586 at 1827.682 kb on + strand, within Pf1N1B4_1586 at 1827.682 kb on + strand, within Pf1N1B4_1586 at 1827.682 kb on + strand, within Pf1N1B4_1586 at 1827.683 kb on - strand, within Pf1N1B4_1586 at 1827.683 kb on - strand, within Pf1N1B4_1586 at 1827.727 kb on + strand, within Pf1N1B4_1586 at 1827.727 kb on + strand, within Pf1N1B4_1586 at 1827.727 kb on + strand, within Pf1N1B4_1586 at 1827.727 kb on + strand, within Pf1N1B4_1586 at 1827.727 kb on + strand, within Pf1N1B4_1586 at 1827.727 kb on + strand, within Pf1N1B4_1586 at 1827.728 kb on - strand, within Pf1N1B4_1586 at 1827.728 kb on - strand, within Pf1N1B4_1586 at 1827.728 kb on - strand, within Pf1N1B4_1586 at 1827.728 kb on - strand, within Pf1N1B4_1586 at 1827.728 kb on - strand, within Pf1N1B4_1586 at 1827.728 kb on - strand, within Pf1N1B4_1586 at 1827.728 kb on - strand, within Pf1N1B4_1586 at 1827.728 kb on - strand, within Pf1N1B4_1586 at 1827.869 kb on - strand, within Pf1N1B4_1586 at 1827.877 kb on + strand, within Pf1N1B4_1586 at 1827.877 kb on + strand, within Pf1N1B4_1586 at 1827.877 kb on + strand, within Pf1N1B4_1586 at 1827.878 kb on - strand, within Pf1N1B4_1586 at 1827.878 kb on - strand, within Pf1N1B4_1586 at 1827.878 kb on - strand, within Pf1N1B4_1586 at 1827.890 kb on - strand, within Pf1N1B4_1586
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 1,825,149 + -3.6 1,825,149 + -3.3 1,825,150 - -0.8 1,825,159 + +0.1 1,825,479 + Pf1N1B4_1584 0.42 -3.6 1,825,480 - Pf1N1B4_1584 0.42 -0.3 1,825,545 + Pf1N1B4_1584 0.50 -1.5 1,825,896 + -2.5 1,825,952 - -2.8 1,825,969 + -3.1 1,826,042 + -2.3 1,826,042 + -0.9 1,826,042 + -3.4 1,826,043 - -1.8 1,826,043 - -1.9 1,826,043 - +0.1 1,826,043 - -1.3 1,826,348 + Pf1N1B4_1585 0.32 -1.5 1,826,349 - Pf1N1B4_1585 0.32 -0.7 1,826,351 + Pf1N1B4_1585 0.32 -1.5 1,826,351 + Pf1N1B4_1585 0.32 -3.4 1,826,351 + Pf1N1B4_1585 0.32 -2.5 1,826,352 - Pf1N1B4_1585 0.32 -2.3 1,826,352 - Pf1N1B4_1585 0.32 -2.4 1,826,352 - Pf1N1B4_1585 0.32 -2.6 1,826,352 - Pf1N1B4_1585 0.32 -2.5 1,826,352 - Pf1N1B4_1585 0.32 -1.3 1,826,352 - Pf1N1B4_1585 0.32 -2.9 1,826,378 + Pf1N1B4_1585 0.35 -1.9 1,826,378 + Pf1N1B4_1585 0.35 -2.5 1,826,378 + Pf1N1B4_1585 0.35 -1.5 1,826,379 - Pf1N1B4_1585 0.35 -1.5 1,826,379 - Pf1N1B4_1585 0.35 -2.8 1,826,379 - Pf1N1B4_1585 0.35 -1.5 1,826,379 - Pf1N1B4_1585 0.35 -0.9 1,826,435 + Pf1N1B4_1585 0.41 -2.8 1,826,435 + Pf1N1B4_1585 0.41 -2.9 1,826,435 + Pf1N1B4_1585 0.41 -2.3 1,826,436 - Pf1N1B4_1585 0.41 -0.9 1,826,436 - Pf1N1B4_1585 0.41 -2.9 1,826,436 - Pf1N1B4_1585 0.41 -2.5 1,826,453 + Pf1N1B4_1585 0.43 -1.9 1,826,454 - Pf1N1B4_1585 0.43 -3.4 1,826,454 - Pf1N1B4_1585 0.43 -1.8 1,826,454 - Pf1N1B4_1585 0.43 +0.1 1,826,510 + Pf1N1B4_1585 0.48 -1.9 1,826,511 - Pf1N1B4_1585 0.49 -0.9 1,826,511 - Pf1N1B4_1585 0.49 +0.1 1,826,558 + Pf1N1B4_1585 0.53 -3.5 1,826,558 + Pf1N1B4_1585 0.53 -2.8 1,826,558 + Pf1N1B4_1585 0.53 -0.9 1,826,558 + Pf1N1B4_1585 0.53 -1.9 1,826,559 - Pf1N1B4_1585 0.53 -1.3 1,826,559 - Pf1N1B4_1585 0.53 -0.5 1,826,559 - Pf1N1B4_1585 0.53 -3.3 1,826,559 - Pf1N1B4_1585 0.53 -3.9 1,826,559 - Pf1N1B4_1585 0.53 +0.1 1,826,649 - Pf1N1B4_1585 0.63 -3.1 1,826,649 - Pf1N1B4_1585 0.63 -3.6 1,826,649 - Pf1N1B4_1585 0.63 -0.9 1,826,649 - Pf1N1B4_1585 0.63 +0.1 1,826,649 - Pf1N1B4_1585 0.63 -3.3 1,826,831 + Pf1N1B4_1585 0.82 -1.5 1,827,024 - -1.1 1,827,024 - -2.3 1,827,024 - -1.8 1,827,024 - -0.9 1,827,116 + -2.3 1,827,117 - +0.4 1,827,117 - -1.0 1,827,117 - +0.1 1,827,117 - +0.6 1,827,117 - -1.3 1,827,117 - -0.4 1,827,123 + -0.9 1,827,123 + -2.3 1,827,123 + -1.9 1,827,124 - +0.1 1,827,124 - -0.5 1,827,124 - -0.5 1,827,124 - -0.1 1,827,124 - -0.2 1,827,124 - -0.1 1,827,124 - -1.4 1,827,124 - -0.4 1,827,124 - -0.4 1,827,124 - -0.4 1,827,124 - +2.1 1,827,124 - -0.7 1,827,124 - -0.9 1,827,196 + -3.3 1,827,196 + -0.9 1,827,196 + -2.8 1,827,196 + +0.6 1,827,196 + +0.1 1,827,196 + +0.1 1,827,197 - -1.9 1,827,197 - -0.7 1,827,197 - -0.2 1,827,197 - -1.5 1,827,197 - -0.4 1,827,197 - -0.3 1,827,197 - +0.1 1,827,197 - -0.8 1,827,197 - +0.1 1,827,197 - -1.7 1,827,197 - -0.0 1,827,197 - -0.8 1,827,197 - +0.6 1,827,197 - -0.2 1,827,197 - +0.2 1,827,197 - -1.4 1,827,199 + -1.8 1,827,199 + -3.1 1,827,199 + -0.5 1,827,199 + -1.5 1,827,200 - -0.9 1,827,200 - -1.2 1,827,200 - -0.2 1,827,200 - -1.3 1,827,200 - -0.8 1,827,200 - +0.0 1,827,200 - -1.1 1,827,200 - -0.4 1,827,200 - -1.8 1,827,239 + Pf1N1B4_1586 0.11 -2.3 1,827,239 + Pf1N1B4_1586 0.11 -2.8 1,827,240 - Pf1N1B4_1586 0.11 -0.7 1,827,277 + Pf1N1B4_1586 0.14 -2.3 1,827,277 + Pf1N1B4_1586 0.14 -0.9 1,827,277 + Pf1N1B4_1586 0.14 -0.9 1,827,277 + Pf1N1B4_1586 0.14 -1.5 1,827,278 - Pf1N1B4_1586 0.14 -1.0 1,827,278 - Pf1N1B4_1586 0.14 -1.1 1,827,278 - Pf1N1B4_1586 0.14 -0.9 1,827,278 - Pf1N1B4_1586 0.14 -0.3 1,827,278 - Pf1N1B4_1586 0.14 -1.0 1,827,278 - Pf1N1B4_1586 0.14 -0.1 1,827,278 - Pf1N1B4_1586 0.14 -1.5 1,827,278 - Pf1N1B4_1586 0.14 -0.9 1,827,278 - Pf1N1B4_1586 0.14 +0.5 1,827,278 - Pf1N1B4_1586 0.14 -1.8 1,827,278 - Pf1N1B4_1586 0.14 -0.9 1,827,325 + Pf1N1B4_1586 0.17 -4.7 1,827,325 + Pf1N1B4_1586 0.17 -1.9 1,827,325 + Pf1N1B4_1586 0.17 -2.8 1,827,325 + Pf1N1B4_1586 0.17 -1.7 1,827,325 + Pf1N1B4_1586 0.17 -0.9 1,827,325 + +0.1 1,827,325 + Pf1N1B4_1586 0.17 -1.5 1,827,325 + Pf1N1B4_1586 0.17 -2.8 1,827,325 + Pf1N1B4_1586 0.17 -1.9 1,827,325 + -0.9 1,827,326 - Pf1N1B4_1586 0.17 -1.9 1,827,326 - Pf1N1B4_1586 0.17 -0.9 1,827,326 - Pf1N1B4_1586 0.17 -2.5 1,827,326 - Pf1N1B4_1586 0.17 -1.9 1,827,326 - Pf1N1B4_1586 0.17 -1.9 1,827,326 - Pf1N1B4_1586 0.17 +0.5 1,827,326 - Pf1N1B4_1586 0.17 +1.6 1,827,326 - Pf1N1B4_1586 0.17 -3.1 1,827,326 - Pf1N1B4_1586 0.17 -1.9 1,827,326 - Pf1N1B4_1586 0.17 -2.3 1,827,326 - Pf1N1B4_1586 0.17 -3.1 1,827,326 - Pf1N1B4_1586 0.17 -0.9 1,827,326 - Pf1N1B4_1586 0.17 +1.1 1,827,326 - Pf1N1B4_1586 0.17 -0.8 1,827,326 - Pf1N1B4_1586 0.17 -1.8 1,827,326 - Pf1N1B4_1586 0.17 -1.4 1,827,326 - Pf1N1B4_1586 0.17 -1.5 1,827,326 - Pf1N1B4_1586 0.17 -1.9 1,827,326 - Pf1N1B4_1586 0.17 -1.9 1,827,326 - Pf1N1B4_1586 0.17 -1.2 1,827,395 - Pf1N1B4_1586 0.22 -0.8 1,827,415 + Pf1N1B4_1586 0.23 -0.9 1,827,416 - Pf1N1B4_1586 0.23 -1.5 1,827,416 - Pf1N1B4_1586 0.23 -2.2 1,827,416 - Pf1N1B4_1586 0.23 -3.4 1,827,416 - Pf1N1B4_1586 0.23 -5.0 1,827,416 - Pf1N1B4_1586 0.23 -3.3 1,827,416 - Pf1N1B4_1586 0.23 -2.5 1,827,416 - Pf1N1B4_1586 0.23 -3.2 1,827,416 - Pf1N1B4_1586 0.23 -2.8 1,827,418 + Pf1N1B4_1586 0.23 -1.9 1,827,419 - Pf1N1B4_1586 0.23 -1.8 1,827,419 - Pf1N1B4_1586 0.23 -2.3 1,827,419 - Pf1N1B4_1586 0.23 -3.8 1,827,419 - Pf1N1B4_1586 0.23 -1.5 1,827,419 - Pf1N1B4_1586 0.23 -2.8 1,827,682 + Pf1N1B4_1586 0.41 -2.5 1,827,682 + Pf1N1B4_1586 0.41 -2.1 1,827,682 + Pf1N1B4_1586 0.41 -2.4 1,827,683 - Pf1N1B4_1586 0.41 -2.3 1,827,683 - Pf1N1B4_1586 0.41 -0.9 1,827,727 + Pf1N1B4_1586 0.44 -1.9 1,827,727 + Pf1N1B4_1586 0.44 -1.8 1,827,727 + Pf1N1B4_1586 0.44 -2.5 1,827,727 + Pf1N1B4_1586 0.44 -0.7 1,827,727 + Pf1N1B4_1586 0.44 -2.9 1,827,727 + Pf1N1B4_1586 0.44 -1.3 1,827,728 - Pf1N1B4_1586 0.44 -3.4 1,827,728 - Pf1N1B4_1586 0.44 +0.1 1,827,728 - Pf1N1B4_1586 0.44 -3.3 1,827,728 - Pf1N1B4_1586 0.44 -1.9 1,827,728 - Pf1N1B4_1586 0.44 -1.5 1,827,728 - Pf1N1B4_1586 0.44 -0.9 1,827,728 - Pf1N1B4_1586 0.44 -2.5 1,827,728 - Pf1N1B4_1586 0.44 +0.1 1,827,869 - Pf1N1B4_1586 0.54 -2.9 1,827,877 + Pf1N1B4_1586 0.54 -1.9 1,827,877 + Pf1N1B4_1586 0.54 -2.3 1,827,877 + Pf1N1B4_1586 0.54 -1.5 1,827,878 - Pf1N1B4_1586 0.54 -3.5 1,827,878 - Pf1N1B4_1586 0.54 -1.5 1,827,878 - Pf1N1B4_1586 0.54 -1.5 1,827,890 - Pf1N1B4_1586 0.55 -1.5
Or see this region's nucleotide sequence