Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1585

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1583 and Pf1N1B4_1584 overlap by 4 nucleotidesPf1N1B4_1584 and Pf1N1B4_1585 are separated by 71 nucleotidesPf1N1B4_1585 and Pf1N1B4_1586 are separated by 68 nucleotides Pf1N1B4_1583 - Histidine ABC transporter, ATP-binding protein (TC 3.A.1), at 1,824,291 to 1,825,121 _1583 Pf1N1B4_1584 - Histidine ABC transporter, permease protein (TC 3.A.1), at 1,825,118 to 1,825,969 _1584 Pf1N1B4_1585 - Histidine ABC transporter, histidine-binding protein (TC 3.A.1), at 1,826,041 to 1,827,009 _1585 Pf1N1B4_1586 - Purine-cytosine permease, at 1,827,078 to 1,828,550 _1586 Position (kb) 1826 1827 1828Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1825.149 kb on + strandat 1825.149 kb on + strandat 1825.150 kb on - strandat 1825.159 kb on + strandat 1825.479 kb on + strand, within Pf1N1B4_1584at 1825.480 kb on - strand, within Pf1N1B4_1584at 1825.545 kb on + strand, within Pf1N1B4_1584at 1825.896 kb on + strandat 1825.952 kb on - strandat 1825.969 kb on + strandat 1826.042 kb on + strandat 1826.042 kb on + strandat 1826.042 kb on + strandat 1826.043 kb on - strandat 1826.043 kb on - strandat 1826.043 kb on - strandat 1826.043 kb on - strandat 1826.348 kb on + strand, within Pf1N1B4_1585at 1826.349 kb on - strand, within Pf1N1B4_1585at 1826.351 kb on + strand, within Pf1N1B4_1585at 1826.351 kb on + strand, within Pf1N1B4_1585at 1826.351 kb on + strand, within Pf1N1B4_1585at 1826.352 kb on - strand, within Pf1N1B4_1585at 1826.352 kb on - strand, within Pf1N1B4_1585at 1826.352 kb on - strand, within Pf1N1B4_1585at 1826.352 kb on - strand, within Pf1N1B4_1585at 1826.352 kb on - strand, within Pf1N1B4_1585at 1826.352 kb on - strand, within Pf1N1B4_1585at 1826.378 kb on + strand, within Pf1N1B4_1585at 1826.378 kb on + strand, within Pf1N1B4_1585at 1826.378 kb on + strand, within Pf1N1B4_1585at 1826.379 kb on - strand, within Pf1N1B4_1585at 1826.379 kb on - strand, within Pf1N1B4_1585at 1826.379 kb on - strand, within Pf1N1B4_1585at 1826.379 kb on - strand, within Pf1N1B4_1585at 1826.435 kb on + strand, within Pf1N1B4_1585at 1826.435 kb on + strand, within Pf1N1B4_1585at 1826.435 kb on + strand, within Pf1N1B4_1585at 1826.436 kb on - strand, within Pf1N1B4_1585at 1826.436 kb on - strand, within Pf1N1B4_1585at 1826.436 kb on - strand, within Pf1N1B4_1585at 1826.453 kb on + strand, within Pf1N1B4_1585at 1826.454 kb on - strand, within Pf1N1B4_1585at 1826.454 kb on - strand, within Pf1N1B4_1585at 1826.454 kb on - strand, within Pf1N1B4_1585at 1826.510 kb on + strand, within Pf1N1B4_1585at 1826.511 kb on - strand, within Pf1N1B4_1585at 1826.511 kb on - strand, within Pf1N1B4_1585at 1826.558 kb on + strand, within Pf1N1B4_1585at 1826.558 kb on + strand, within Pf1N1B4_1585at 1826.558 kb on + strand, within Pf1N1B4_1585at 1826.558 kb on + strand, within Pf1N1B4_1585at 1826.559 kb on - strand, within Pf1N1B4_1585at 1826.559 kb on - strand, within Pf1N1B4_1585at 1826.559 kb on - strand, within Pf1N1B4_1585at 1826.559 kb on - strand, within Pf1N1B4_1585at 1826.559 kb on - strand, within Pf1N1B4_1585at 1826.649 kb on - strand, within Pf1N1B4_1585at 1826.649 kb on - strand, within Pf1N1B4_1585at 1826.649 kb on - strand, within Pf1N1B4_1585at 1826.649 kb on - strand, within Pf1N1B4_1585at 1826.649 kb on - strand, within Pf1N1B4_1585at 1826.831 kb on + strand, within Pf1N1B4_1585at 1827.024 kb on - strandat 1827.024 kb on - strandat 1827.024 kb on - strandat 1827.024 kb on - strandat 1827.116 kb on + strandat 1827.117 kb on - strandat 1827.117 kb on - strandat 1827.117 kb on - strandat 1827.117 kb on - strandat 1827.117 kb on - strandat 1827.117 kb on - strandat 1827.123 kb on + strandat 1827.123 kb on + strandat 1827.123 kb on + strandat 1827.124 kb on - strandat 1827.124 kb on - strandat 1827.124 kb on - strandat 1827.124 kb on - strandat 1827.124 kb on - strandat 1827.124 kb on - strandat 1827.124 kb on - strandat 1827.124 kb on - strandat 1827.124 kb on - strandat 1827.124 kb on - strandat 1827.124 kb on - strandat 1827.124 kb on - strandat 1827.124 kb on - strandat 1827.196 kb on + strandat 1827.196 kb on + strandat 1827.196 kb on + strandat 1827.196 kb on + strandat 1827.196 kb on + strandat 1827.196 kb on + strandat 1827.197 kb on - strandat 1827.197 kb on - strandat 1827.197 kb on - strandat 1827.197 kb on - strandat 1827.197 kb on - strandat 1827.197 kb on - strandat 1827.197 kb on - strandat 1827.197 kb on - strandat 1827.197 kb on - strandat 1827.197 kb on - strandat 1827.197 kb on - strandat 1827.197 kb on - strandat 1827.197 kb on - strandat 1827.197 kb on - strandat 1827.197 kb on - strandat 1827.197 kb on - strandat 1827.199 kb on + strandat 1827.199 kb on + strandat 1827.199 kb on + strandat 1827.199 kb on + strandat 1827.200 kb on - strandat 1827.200 kb on - strandat 1827.200 kb on - strandat 1827.200 kb on - strandat 1827.200 kb on - strandat 1827.200 kb on - strandat 1827.200 kb on - strandat 1827.200 kb on - strandat 1827.200 kb on - strandat 1827.239 kb on + strand, within Pf1N1B4_1586at 1827.239 kb on + strand, within Pf1N1B4_1586at 1827.240 kb on - strand, within Pf1N1B4_1586at 1827.277 kb on + strand, within Pf1N1B4_1586at 1827.277 kb on + strand, within Pf1N1B4_1586at 1827.277 kb on + strand, within Pf1N1B4_1586at 1827.277 kb on + strand, within Pf1N1B4_1586at 1827.278 kb on - strand, within Pf1N1B4_1586at 1827.278 kb on - strand, within Pf1N1B4_1586at 1827.278 kb on - strand, within Pf1N1B4_1586at 1827.278 kb on - strand, within Pf1N1B4_1586at 1827.278 kb on - strand, within Pf1N1B4_1586at 1827.278 kb on - strand, within Pf1N1B4_1586at 1827.278 kb on - strand, within Pf1N1B4_1586at 1827.278 kb on - strand, within Pf1N1B4_1586at 1827.278 kb on - strand, within Pf1N1B4_1586at 1827.278 kb on - strand, within Pf1N1B4_1586at 1827.278 kb on - strand, within Pf1N1B4_1586at 1827.325 kb on + strand, within Pf1N1B4_1586at 1827.325 kb on + strand, within Pf1N1B4_1586at 1827.325 kb on + strand, within Pf1N1B4_1586at 1827.325 kb on + strand, within Pf1N1B4_1586at 1827.325 kb on + strand, within Pf1N1B4_1586at 1827.325 kb on + strandat 1827.325 kb on + strand, within Pf1N1B4_1586at 1827.325 kb on + strand, within Pf1N1B4_1586at 1827.325 kb on + strand, within Pf1N1B4_1586at 1827.325 kb on + strandat 1827.326 kb on - strand, within Pf1N1B4_1586at 1827.326 kb on - strand, within Pf1N1B4_1586at 1827.326 kb on - strand, within Pf1N1B4_1586at 1827.326 kb on - strand, within Pf1N1B4_1586at 1827.326 kb on - strand, within Pf1N1B4_1586at 1827.326 kb on - strand, within Pf1N1B4_1586at 1827.326 kb on - strand, within Pf1N1B4_1586at 1827.326 kb on - strand, within Pf1N1B4_1586at 1827.326 kb on - strand, within Pf1N1B4_1586at 1827.326 kb on - strand, within Pf1N1B4_1586at 1827.326 kb on - strand, within Pf1N1B4_1586at 1827.326 kb on - strand, within Pf1N1B4_1586at 1827.326 kb on - strand, within Pf1N1B4_1586at 1827.326 kb on - strand, within Pf1N1B4_1586at 1827.326 kb on - strand, within Pf1N1B4_1586at 1827.326 kb on - strand, within Pf1N1B4_1586at 1827.326 kb on - strand, within Pf1N1B4_1586at 1827.326 kb on - strand, within Pf1N1B4_1586at 1827.326 kb on - strand, within Pf1N1B4_1586at 1827.326 kb on - strand, within Pf1N1B4_1586at 1827.395 kb on - strand, within Pf1N1B4_1586at 1827.415 kb on + strand, within Pf1N1B4_1586at 1827.416 kb on - strand, within Pf1N1B4_1586at 1827.416 kb on - strand, within Pf1N1B4_1586at 1827.416 kb on - strand, within Pf1N1B4_1586at 1827.416 kb on - strand, within Pf1N1B4_1586at 1827.416 kb on - strand, within Pf1N1B4_1586at 1827.416 kb on - strand, within Pf1N1B4_1586at 1827.416 kb on - strand, within Pf1N1B4_1586at 1827.416 kb on - strand, within Pf1N1B4_1586at 1827.418 kb on + strand, within Pf1N1B4_1586at 1827.419 kb on - strand, within Pf1N1B4_1586at 1827.419 kb on - strand, within Pf1N1B4_1586at 1827.419 kb on - strand, within Pf1N1B4_1586at 1827.419 kb on - strand, within Pf1N1B4_1586at 1827.419 kb on - strand, within Pf1N1B4_1586at 1827.682 kb on + strand, within Pf1N1B4_1586at 1827.682 kb on + strand, within Pf1N1B4_1586at 1827.682 kb on + strand, within Pf1N1B4_1586at 1827.683 kb on - strand, within Pf1N1B4_1586at 1827.683 kb on - strand, within Pf1N1B4_1586at 1827.727 kb on + strand, within Pf1N1B4_1586at 1827.727 kb on + strand, within Pf1N1B4_1586at 1827.727 kb on + strand, within Pf1N1B4_1586at 1827.727 kb on + strand, within Pf1N1B4_1586at 1827.727 kb on + strand, within Pf1N1B4_1586at 1827.727 kb on + strand, within Pf1N1B4_1586at 1827.728 kb on - strand, within Pf1N1B4_1586at 1827.728 kb on - strand, within Pf1N1B4_1586at 1827.728 kb on - strand, within Pf1N1B4_1586at 1827.728 kb on - strand, within Pf1N1B4_1586at 1827.728 kb on - strand, within Pf1N1B4_1586at 1827.728 kb on - strand, within Pf1N1B4_1586at 1827.728 kb on - strand, within Pf1N1B4_1586at 1827.728 kb on - strand, within Pf1N1B4_1586at 1827.869 kb on - strand, within Pf1N1B4_1586at 1827.877 kb on + strand, within Pf1N1B4_1586at 1827.877 kb on + strand, within Pf1N1B4_1586at 1827.877 kb on + strand, within Pf1N1B4_1586at 1827.878 kb on - strand, within Pf1N1B4_1586at 1827.878 kb on - strand, within Pf1N1B4_1586at 1827.878 kb on - strand, within Pf1N1B4_1586at 1827.890 kb on - strand, within Pf1N1B4_1586

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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1,825,149 + -3.6
1,825,149 + -3.3
1,825,150 - -0.8
1,825,159 + +0.1
1,825,479 + Pf1N1B4_1584 0.42 -3.6
1,825,480 - Pf1N1B4_1584 0.42 -0.3
1,825,545 + Pf1N1B4_1584 0.50 -1.5
1,825,896 + -2.5
1,825,952 - -2.8
1,825,969 + -3.1
1,826,042 + -2.3
1,826,042 + -0.9
1,826,042 + -3.4
1,826,043 - -1.8
1,826,043 - -1.9
1,826,043 - +0.1
1,826,043 - -1.3
1,826,348 + Pf1N1B4_1585 0.32 -1.5
1,826,349 - Pf1N1B4_1585 0.32 -0.7
1,826,351 + Pf1N1B4_1585 0.32 -1.5
1,826,351 + Pf1N1B4_1585 0.32 -3.4
1,826,351 + Pf1N1B4_1585 0.32 -2.5
1,826,352 - Pf1N1B4_1585 0.32 -2.3
1,826,352 - Pf1N1B4_1585 0.32 -2.4
1,826,352 - Pf1N1B4_1585 0.32 -2.6
1,826,352 - Pf1N1B4_1585 0.32 -2.5
1,826,352 - Pf1N1B4_1585 0.32 -1.3
1,826,352 - Pf1N1B4_1585 0.32 -2.9
1,826,378 + Pf1N1B4_1585 0.35 -1.9
1,826,378 + Pf1N1B4_1585 0.35 -2.5
1,826,378 + Pf1N1B4_1585 0.35 -1.5
1,826,379 - Pf1N1B4_1585 0.35 -1.5
1,826,379 - Pf1N1B4_1585 0.35 -2.8
1,826,379 - Pf1N1B4_1585 0.35 -1.5
1,826,379 - Pf1N1B4_1585 0.35 -0.9
1,826,435 + Pf1N1B4_1585 0.41 -2.8
1,826,435 + Pf1N1B4_1585 0.41 -2.9
1,826,435 + Pf1N1B4_1585 0.41 -2.3
1,826,436 - Pf1N1B4_1585 0.41 -0.9
1,826,436 - Pf1N1B4_1585 0.41 -2.9
1,826,436 - Pf1N1B4_1585 0.41 -2.5
1,826,453 + Pf1N1B4_1585 0.43 -1.9
1,826,454 - Pf1N1B4_1585 0.43 -3.4
1,826,454 - Pf1N1B4_1585 0.43 -1.8
1,826,454 - Pf1N1B4_1585 0.43 +0.1
1,826,510 + Pf1N1B4_1585 0.48 -1.9
1,826,511 - Pf1N1B4_1585 0.49 -0.9
1,826,511 - Pf1N1B4_1585 0.49 +0.1
1,826,558 + Pf1N1B4_1585 0.53 -3.5
1,826,558 + Pf1N1B4_1585 0.53 -2.8
1,826,558 + Pf1N1B4_1585 0.53 -0.9
1,826,558 + Pf1N1B4_1585 0.53 -1.9
1,826,559 - Pf1N1B4_1585 0.53 -1.3
1,826,559 - Pf1N1B4_1585 0.53 -0.5
1,826,559 - Pf1N1B4_1585 0.53 -3.3
1,826,559 - Pf1N1B4_1585 0.53 -3.9
1,826,559 - Pf1N1B4_1585 0.53 +0.1
1,826,649 - Pf1N1B4_1585 0.63 -3.1
1,826,649 - Pf1N1B4_1585 0.63 -3.6
1,826,649 - Pf1N1B4_1585 0.63 -0.9
1,826,649 - Pf1N1B4_1585 0.63 +0.1
1,826,649 - Pf1N1B4_1585 0.63 -3.3
1,826,831 + Pf1N1B4_1585 0.82 -1.5
1,827,024 - -1.1
1,827,024 - -2.3
1,827,024 - -1.8
1,827,024 - -0.9
1,827,116 + -2.3
1,827,117 - +0.4
1,827,117 - -1.0
1,827,117 - +0.1
1,827,117 - +0.6
1,827,117 - -1.3
1,827,117 - -0.4
1,827,123 + -0.9
1,827,123 + -2.3
1,827,123 + -1.9
1,827,124 - +0.1
1,827,124 - -0.5
1,827,124 - -0.5
1,827,124 - -0.1
1,827,124 - -0.2
1,827,124 - -0.1
1,827,124 - -1.4
1,827,124 - -0.4
1,827,124 - -0.4
1,827,124 - -0.4
1,827,124 - +2.1
1,827,124 - -0.7
1,827,124 - -0.9
1,827,196 + -3.3
1,827,196 + -0.9
1,827,196 + -2.8
1,827,196 + +0.6
1,827,196 + +0.1
1,827,196 + +0.1
1,827,197 - -1.9
1,827,197 - -0.7
1,827,197 - -0.2
1,827,197 - -1.5
1,827,197 - -0.4
1,827,197 - -0.3
1,827,197 - +0.1
1,827,197 - -0.8
1,827,197 - +0.1
1,827,197 - -1.7
1,827,197 - -0.0
1,827,197 - -0.8
1,827,197 - +0.6
1,827,197 - -0.2
1,827,197 - +0.2
1,827,197 - -1.4
1,827,199 + -1.8
1,827,199 + -3.1
1,827,199 + -0.5
1,827,199 + -1.5
1,827,200 - -0.9
1,827,200 - -1.2
1,827,200 - -0.2
1,827,200 - -1.3
1,827,200 - -0.8
1,827,200 - +0.0
1,827,200 - -1.1
1,827,200 - -0.4
1,827,200 - -1.8
1,827,239 + Pf1N1B4_1586 0.11 -2.3
1,827,239 + Pf1N1B4_1586 0.11 -2.8
1,827,240 - Pf1N1B4_1586 0.11 -0.7
1,827,277 + Pf1N1B4_1586 0.14 -2.3
1,827,277 + Pf1N1B4_1586 0.14 -0.9
1,827,277 + Pf1N1B4_1586 0.14 -0.9
1,827,277 + Pf1N1B4_1586 0.14 -1.5
1,827,278 - Pf1N1B4_1586 0.14 -1.0
1,827,278 - Pf1N1B4_1586 0.14 -1.1
1,827,278 - Pf1N1B4_1586 0.14 -0.9
1,827,278 - Pf1N1B4_1586 0.14 -0.3
1,827,278 - Pf1N1B4_1586 0.14 -1.0
1,827,278 - Pf1N1B4_1586 0.14 -0.1
1,827,278 - Pf1N1B4_1586 0.14 -1.5
1,827,278 - Pf1N1B4_1586 0.14 -0.9
1,827,278 - Pf1N1B4_1586 0.14 +0.5
1,827,278 - Pf1N1B4_1586 0.14 -1.8
1,827,278 - Pf1N1B4_1586 0.14 -0.9
1,827,325 + Pf1N1B4_1586 0.17 -4.7
1,827,325 + Pf1N1B4_1586 0.17 -1.9
1,827,325 + Pf1N1B4_1586 0.17 -2.8
1,827,325 + Pf1N1B4_1586 0.17 -1.7
1,827,325 + Pf1N1B4_1586 0.17 -0.9
1,827,325 + +0.1
1,827,325 + Pf1N1B4_1586 0.17 -1.5
1,827,325 + Pf1N1B4_1586 0.17 -2.8
1,827,325 + Pf1N1B4_1586 0.17 -1.9
1,827,325 + -0.9
1,827,326 - Pf1N1B4_1586 0.17 -1.9
1,827,326 - Pf1N1B4_1586 0.17 -0.9
1,827,326 - Pf1N1B4_1586 0.17 -2.5
1,827,326 - Pf1N1B4_1586 0.17 -1.9
1,827,326 - Pf1N1B4_1586 0.17 -1.9
1,827,326 - Pf1N1B4_1586 0.17 +0.5
1,827,326 - Pf1N1B4_1586 0.17 +1.6
1,827,326 - Pf1N1B4_1586 0.17 -3.1
1,827,326 - Pf1N1B4_1586 0.17 -1.9
1,827,326 - Pf1N1B4_1586 0.17 -2.3
1,827,326 - Pf1N1B4_1586 0.17 -3.1
1,827,326 - Pf1N1B4_1586 0.17 -0.9
1,827,326 - Pf1N1B4_1586 0.17 +1.1
1,827,326 - Pf1N1B4_1586 0.17 -0.8
1,827,326 - Pf1N1B4_1586 0.17 -1.8
1,827,326 - Pf1N1B4_1586 0.17 -1.4
1,827,326 - Pf1N1B4_1586 0.17 -1.5
1,827,326 - Pf1N1B4_1586 0.17 -1.9
1,827,326 - Pf1N1B4_1586 0.17 -1.9
1,827,326 - Pf1N1B4_1586 0.17 -1.2
1,827,395 - Pf1N1B4_1586 0.22 -0.8
1,827,415 + Pf1N1B4_1586 0.23 -0.9
1,827,416 - Pf1N1B4_1586 0.23 -1.5
1,827,416 - Pf1N1B4_1586 0.23 -2.2
1,827,416 - Pf1N1B4_1586 0.23 -3.4
1,827,416 - Pf1N1B4_1586 0.23 -5.0
1,827,416 - Pf1N1B4_1586 0.23 -3.3
1,827,416 - Pf1N1B4_1586 0.23 -2.5
1,827,416 - Pf1N1B4_1586 0.23 -3.2
1,827,416 - Pf1N1B4_1586 0.23 -2.8
1,827,418 + Pf1N1B4_1586 0.23 -1.9
1,827,419 - Pf1N1B4_1586 0.23 -1.8
1,827,419 - Pf1N1B4_1586 0.23 -2.3
1,827,419 - Pf1N1B4_1586 0.23 -3.8
1,827,419 - Pf1N1B4_1586 0.23 -1.5
1,827,419 - Pf1N1B4_1586 0.23 -2.8
1,827,682 + Pf1N1B4_1586 0.41 -2.5
1,827,682 + Pf1N1B4_1586 0.41 -2.1
1,827,682 + Pf1N1B4_1586 0.41 -2.4
1,827,683 - Pf1N1B4_1586 0.41 -2.3
1,827,683 - Pf1N1B4_1586 0.41 -0.9
1,827,727 + Pf1N1B4_1586 0.44 -1.9
1,827,727 + Pf1N1B4_1586 0.44 -1.8
1,827,727 + Pf1N1B4_1586 0.44 -2.5
1,827,727 + Pf1N1B4_1586 0.44 -0.7
1,827,727 + Pf1N1B4_1586 0.44 -2.9
1,827,727 + Pf1N1B4_1586 0.44 -1.3
1,827,728 - Pf1N1B4_1586 0.44 -3.4
1,827,728 - Pf1N1B4_1586 0.44 +0.1
1,827,728 - Pf1N1B4_1586 0.44 -3.3
1,827,728 - Pf1N1B4_1586 0.44 -1.9
1,827,728 - Pf1N1B4_1586 0.44 -1.5
1,827,728 - Pf1N1B4_1586 0.44 -0.9
1,827,728 - Pf1N1B4_1586 0.44 -2.5
1,827,728 - Pf1N1B4_1586 0.44 +0.1
1,827,869 - Pf1N1B4_1586 0.54 -2.9
1,827,877 + Pf1N1B4_1586 0.54 -1.9
1,827,877 + Pf1N1B4_1586 0.54 -2.3
1,827,877 + Pf1N1B4_1586 0.54 -1.5
1,827,878 - Pf1N1B4_1586 0.54 -3.5
1,827,878 - Pf1N1B4_1586 0.54 -1.5
1,827,878 - Pf1N1B4_1586 0.54 -1.5
1,827,890 - Pf1N1B4_1586 0.55 -1.5

Or see this region's nucleotide sequence