Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS23910

Experiment: Temperature shift 30_to_10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Temperature shift 30_to_10
5,356,958	-				-0.2
5,356,958	-				+0.9
5,357,049	-		PFLU_RS23905	0.11	-0.7
5,357,147	+		PFLU_RS23905	0.23	+1.6
5,357,147	+		PFLU_RS23905	0.23	-0.2
5,357,147	+		PFLU_RS23905	0.23	+1.0
5,357,147	+		PFLU_RS23905	0.23	-1.0
5,357,148	-		PFLU_RS23905	0.23	-0.5
5,357,148	-		PFLU_RS23905	0.23	-0.2
5,357,148	-		PFLU_RS23905	0.23	+0.6
5,357,339	+		PFLU_RS23905	0.47	-0.3
5,357,339	+		PFLU_RS23905	0.47	+0.3
5,357,368	+		PFLU_RS23905	0.50	+0.3
5,357,368	+		PFLU_RS23905	0.50	-0.7
5,357,368	+		PFLU_RS23905	0.50	+0.3
5,357,368	+		PFLU_RS23905	0.50	-0.8
5,357,368	+		PFLU_RS23905	0.50	+1.9
5,357,369	-		PFLU_RS23905	0.50	+0.3
5,357,369	-		PFLU_RS23905	0.50	+0.4
5,357,369	-		PFLU_RS23905	0.50	-0.6
5,357,488	+		PFLU_RS23905	0.65	+0.4
5,357,488	+		PFLU_RS23905	0.65	+0.1
5,357,489	-		PFLU_RS23905	0.65	-1.0
5,357,489	-		PFLU_RS23905	0.65	+0.6
5,357,533	+		PFLU_RS23905	0.70	-0.4
5,357,533	+		PFLU_RS23905	0.70	-1.2
5,357,533	+		PFLU_RS23905	0.70	+0.5
5,357,533	+		PFLU_RS23905	0.70	-0.9
5,357,533	+		PFLU_RS23905	0.70	+0.0
5,357,533	+		PFLU_RS23905	0.70	-0.4
5,357,533	+		PFLU_RS23905	0.70	-0.1
5,357,533	+		PFLU_RS23905	0.70	-0.4
5,357,533	+		PFLU_RS23905	0.70	+0.2
5,357,533	+		PFLU_RS23905	0.70	-1.5
5,357,533	+		PFLU_RS23905	0.70	-1.8
5,357,533	+		PFLU_RS23905	0.70	+0.5
5,357,533	+		PFLU_RS23905	0.70	+0.4
5,357,534	-		PFLU_RS23905	0.71	+1.6
5,357,534	-		PFLU_RS23905	0.71	+0.1
5,357,534	-		PFLU_RS23905	0.71	-0.2
5,357,534	-		PFLU_RS23905	0.71	-1.2
5,357,534	-		PFLU_RS23905	0.71	+1.6
5,357,534	-		PFLU_RS23905	0.71	-1.7
5,357,534	-		PFLU_RS23905	0.71	-0.4
5,357,534	-		PFLU_RS23905	0.71	+0.2
5,357,534	-		PFLU_RS23905	0.71	+1.0
5,357,534	-		PFLU_RS23905	0.71	+0.0
5,357,534	-		PFLU_RS23905	0.71	+0.2
5,357,542	+		PFLU_RS23905	0.72	-0.4
5,357,542	+		PFLU_RS23905	0.72	+1.7
5,357,542	+		PFLU_RS23905	0.72	+0.8
5,357,542	+		PFLU_RS23905	0.72	+0.3
5,357,542	+		PFLU_RS23905	0.72	+0.2
5,357,543	-		PFLU_RS23905	0.72	-0.6
5,357,543	-		PFLU_RS23905	0.72	+0.0
5,357,543	-		PFLU_RS23905	0.72	+0.3
5,357,543	-		PFLU_RS23905	0.72	-0.5
5,357,543	-		PFLU_RS23905	0.72	+0.1
5,357,543	-		PFLU_RS23905	0.72	-0.3
5,357,543	-		PFLU_RS23905	0.72	+0.2
5,357,543	-		PFLU_RS23905	0.72	+1.3
5,357,543	-		PFLU_RS23905	0.72	+0.0
5,357,579	+		PFLU_RS23905	0.76	+0.1
5,357,579	+		PFLU_RS23905	0.76	-0.2
5,357,605	+		PFLU_RS23905	0.79	-1.2
5,357,606	-		PFLU_RS23905	0.79	+0.1
5,357,606	-		PFLU_RS23905	0.79	+1.2
5,357,671	+		PFLU_RS23905	0.87	-0.7
5,357,671	+		PFLU_RS23905	0.87	-2.9
5,357,671	+		PFLU_RS23905	0.87	-1.6
5,357,671	+		PFLU_RS23905	0.87	-0.7
5,357,671	+		PFLU_RS23905	0.87	-0.4
5,357,671	+		PFLU_RS23905	0.87	+0.0
5,357,671	+		PFLU_RS23905	0.87	+2.6
5,357,672	-		PFLU_RS23905	0.87	+2.6
5,357,672	-		PFLU_RS23905	0.87	+0.2
5,357,672	-		PFLU_RS23905	0.87	-0.7
5,357,672	-		PFLU_RS23905	0.87	+0.0
5,357,672	-		PFLU_RS23905	0.87	-1.4
5,357,707	+				-0.5
5,357,707	+				+0.0
5,357,707	+				+0.5
5,357,707	+				+0.0
5,357,707	+				+0.9
5,357,707	+				-1.9
5,357,707	+				+0.3
5,357,707	+				+0.4
5,357,707	+				-0.2
5,357,707	+				+0.4
5,357,707	+				+1.0
5,357,707	+				+0.6
5,357,707	+				-0.7
5,357,708	-				-1.0
5,357,708	-				+0.6
5,357,708	-				+0.3
5,357,708	-				+0.4
5,357,708	-				-0.8
5,357,708	-				-0.6
5,357,708	-				+0.2
5,357,708	-				-0.1
5,357,708	-				+0.0
5,357,708	-				-1.1
5,357,708	-				+0.9
5,357,789	+				-1.2
5,357,789	+				+0.1
5,357,789	+				+0.1
5,357,790	-				+0.1
5,358,107	+		PFLU_RS23910	0.53	-0.9
5,358,108	-		PFLU_RS23910	0.53	+0.3
5,358,108	-		PFLU_RS23910	0.53	+1.2
5,358,115	+		PFLU_RS23910	0.54	-0.2
5,358,115	+		PFLU_RS23910	0.54	-0.1
5,358,115	+		PFLU_RS23910	0.54	+0.2
5,358,115	+		PFLU_RS23910	0.54	+0.9
5,358,116	-		PFLU_RS23910	0.54	+0.5
5,358,116	-		PFLU_RS23910	0.54	-0.8
5,358,246	+		PFLU_RS23910	0.75	+2.1
5,358,246	+		PFLU_RS23910	0.75	+0.4
5,358,246	+		PFLU_RS23910	0.75	-0.7
5,358,247	-		PFLU_RS23910	0.75	+0.3
5,358,292	+		PFLU_RS23910	0.82	+0.6
5,358,292	+		PFLU_RS23910	0.82	+0.5
5,358,293	-		PFLU_RS23910	0.82	-1.0
5,358,293	-		PFLU_RS23910	0.82	+0.4
5,358,310	+		PFLU_RS23910	0.85	-0.9
5,358,310	+		PFLU_RS23910	0.85	+2.0
5,358,311	-		PFLU_RS23910	0.85	-0.2
5,358,311	-		PFLU_RS23910	0.85	-2.7
5,358,353	+				+0.2
5,358,353	+				-0.2
5,358,353	+				+1.6
5,358,353	+				-1.8
5,358,353	+				-0.4
5,358,411	+				+0.2
5,358,411	+				-0.4
5,358,411	+				+1.4
5,358,411	+				-2.5
5,358,411	+				-0.4
5,358,412	-				+0.2
5,358,412	-				-0.2
5,358,412	-				-1.6
5,358,412	-				-0.7
5,358,412	-				-2.8
5,358,432	+				-0.2
5,358,433	-				-1.1
5,358,433	-				+2.2
5,358,492	-				-0.1
5,358,645	+		PFLU_RS23915	0.26	-0.5
5,358,645	+		PFLU_RS23915	0.26	-0.9
5,358,645	+		PFLU_RS23915	0.26	+0.3
5,358,645	+		PFLU_RS23915	0.26	-0.3
5,358,645	+		PFLU_RS23915	0.26	-0.6
5,358,645	+		PFLU_RS23915	0.26	+0.2
5,358,645	+		PFLU_RS23915	0.26	-0.6
5,358,645	+		PFLU_RS23915	0.26	+0.3
5,358,645	+		PFLU_RS23915	0.26	+0.6
5,358,645	+		PFLU_RS23915	0.26	+0.4
5,358,645	+		PFLU_RS23915	0.26	-0.7
5,358,646	-		PFLU_RS23915	0.26	+0.8
5,358,646	-		PFLU_RS23915	0.26	-2.7
5,358,646	-		PFLU_RS23915	0.26	-0.3
5,358,647	+		PFLU_RS23915	0.27	+0.5
5,358,647	+		PFLU_RS23915	0.27	-1.4
5,358,647	+		PFLU_RS23915	0.27	-0.8
5,358,647	+		PFLU_RS23915	0.27	-0.5
5,358,647	+		PFLU_RS23915	0.27	-1.9
5,358,647	+		PFLU_RS23915	0.27	-1.1
5,358,647	+		PFLU_RS23915	0.27	-0.1
5,358,647	+		PFLU_RS23915	0.27	-0.7
5,358,647	+		PFLU_RS23915	0.27	+0.8
5,358,647	+		PFLU_RS23915	0.27	-1.2
5,358,647	+		PFLU_RS23915	0.27	+0.3
5,358,648	-		PFLU_RS23915	0.27	-0.3
5,358,648	-		PFLU_RS23915	0.27	+1.6
5,358,648	-		PFLU_RS23915	0.27	+1.1
5,358,648	-		PFLU_RS23915	0.27	+0.6
5,358,648	-		PFLU_RS23915	0.27	+1.8
5,358,648	-		PFLU_RS23915	0.27	+1.6
5,358,648	-		PFLU_RS23915	0.27	-0.4
5,358,648	-		PFLU_RS23915	0.27	-1.1
5,358,648	-		PFLU_RS23915	0.27	-0.6
5,358,689	+		PFLU_RS23915	0.31	+1.6
5,358,689	+		PFLU_RS23915	0.31	+0.4
5,358,949	-		PFLU_RS23915	0.61	-0.8
5,358,949	-		PFLU_RS23915	0.61	-0.8
5,358,949	-		PFLU_RS23915	0.61	-0.4
5,358,949	-		PFLU_RS23915	0.61	-1.1
5,358,967	+		PFLU_RS23915	0.64	+1.6
5,358,967	+		PFLU_RS23915	0.64	+0.6
5,358,967	+		PFLU_RS23915	0.64	+0.6
5,358,967	+		PFLU_RS23915	0.64	-0.6
5,358,967	+		PFLU_RS23915	0.64	-2.7
5,358,968	-		PFLU_RS23915	0.64	+0.3
5,358,968	-		PFLU_RS23915	0.64	-0.6
5,358,968	-		PFLU_RS23915	0.64	+0.2
5,359,291	+				+0.1
5,359,291	+				-0.5
5,359,291	+				+1.0
5,359,291	+				+1.1
5,359,292	-				+0.9
5,359,292	-				-0.6
5,359,292	-				-1.3
5,359,322	+				+0.9
5,359,322	+				+0.1
5,359,322	+				+1.4
5,359,322	+				+0.3
5,359,322	+				-0.4
5,359,322	+				+0.9
5,359,322	+				+1.1
5,359,322	+				-0.2
5,359,322	+				-1.4
5,359,322	+				-1.4
5,359,322	+				+0.7
5,359,323	-				-1.2
5,359,323	-				+0.2
5,359,323	-				+1.0
5,359,323	-				-0.2
5,359,323	-				-1.0
5,359,323	-				+2.2
5,359,323	-				+0.6
5,359,323	-				-0.4
5,359,323	-				-0.9
5,359,323	-				+0.8
5,359,323	-				-1.5
5,359,323	-				-0.4
5,359,323	-				+0.2
5,359,323	-				+0.2
5,359,323	-				+0.5
5,359,323	-				-2.2
5,359,323	-				+0.6
5,359,323	-				+0.6
5,359,334	+				+1.6
5,359,334	+				-0.1
5,359,334	+				-0.6
5,359,334	+				-0.4
5,359,334	+				-2.5
5,359,334	+				+0.7
5,359,334	+				+0.9
5,359,335	-				-1.3
5,359,335	-				-0.6
5,359,335	-				+0.6
5,359,335	-				-1.0
5,359,335	-				+0.6
5,359,335	-				+0.3
5,359,335	-				-1.9
5,359,335	-				-0.3
5,359,335	-				-0.7
5,359,335	-				-1.3
5,359,335	-				-0.2
5,359,337	+				+1.1
5,359,337	+				+1.0
5,359,337	+				+0.7
5,359,337	+				+1.5
5,359,337	+				+0.3
5,359,337	+				-0.1
5,359,337	+				+0.7
5,359,337	+				-1.9
5,359,337	+				-0.2
5,359,337	+				+0.0
5,359,337	+				-1.2
5,359,338	-				-1.0
5,359,338	-				-1.1
5,359,365	+				-3.1
5,359,365	+				-1.3
5,359,365	+				-1.1
5,359,365	+				-0.2
5,359,366	-				+0.9
5,359,366	-				+0.8