Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS16325

Experiment: Temperature shift 30_to_10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Temperature shift 30_to_10
3,702,015	+				+0.1
3,702,016	-				-0.1
3,702,079	-		PFLU_RS16315	0.12	-1.7
3,702,149	-		PFLU_RS16315	0.24	-1.0
3,702,172	+		PFLU_RS16315	0.27	-2.1
3,702,239	-		PFLU_RS16315	0.39	+1.9
3,702,239	-		PFLU_RS16315	0.39	+0.6
3,702,239	-		PFLU_RS16315	0.39	-0.1
3,702,239	-		PFLU_RS16315	0.39	-0.1
3,702,239	-		PFLU_RS16315	0.39	-1.1
3,702,241	+		PFLU_RS16315	0.39	-0.1
3,702,329	+		PFLU_RS16315	0.54	-0.1
3,702,330	-		PFLU_RS16315	0.54	-1.0
3,702,330	-		PFLU_RS16315	0.54	+0.4
3,702,330	-		PFLU_RS16315	0.54	+1.0
3,702,330	-		PFLU_RS16315	0.54	+1.7
3,702,346	+		PFLU_RS16315	0.57	-1.1
3,702,346	+		PFLU_RS16315	0.57	+0.9
3,702,346	+		PFLU_RS16315	0.57	-0.2
3,702,381	+		PFLU_RS16315	0.63	+0.5
3,702,431	-		PFLU_RS16315	0.71	-1.3
3,702,431	-		PFLU_RS16315	0.71	-0.3
3,702,495	+		PFLU_RS16315	0.82	-0.1
3,702,496	-		PFLU_RS16315	0.82	-0.1
3,702,498	-		PFLU_RS16315	0.83	+0.1
3,702,498	-		PFLU_RS16315	0.83	-1.7
3,702,499	+		PFLU_RS16315	0.83	-3.2
3,702,500	-		PFLU_RS16315	0.83	-1.5
3,702,526	+		PFLU_RS16315	0.87	+2.6
3,702,606	-				-0.6
3,702,606	-				+0.3
3,702,621	+				-1.1
3,702,622	-				-0.1
3,702,625	+				+0.4
3,702,638	+				-1.1
3,702,639	-				-1.3
3,702,641	+				-0.1
3,702,678	+				+0.3
3,702,707	-		PFLU_RS16320	0.12	+0.9
3,702,810	+		PFLU_RS16320	0.44	+1.0
3,702,832	+		PFLU_RS16320	0.50	-0.1
3,702,832	+		PFLU_RS16320	0.50	-0.7
3,702,833	-		PFLU_RS16320	0.51	+0.3
3,702,839	-		PFLU_RS16320	0.53	-1.1
3,702,843	+		PFLU_RS16320	0.54	+1.4
3,702,843	+		PFLU_RS16320	0.54	+0.9
3,702,843	+		PFLU_RS16320	0.54	-1.1
3,702,844	-		PFLU_RS16320	0.54	-1.1
3,702,844	-		PFLU_RS16320	0.54	-0.5
3,702,882	-		PFLU_RS16320	0.66	-0.4
3,702,939	+		PFLU_RS16320	0.83	+1.0
3,702,939	+		PFLU_RS16320	0.83	+0.5
3,702,939	+		PFLU_RS16320	0.83	+0.5
3,702,940	-		PFLU_RS16320	0.83	+0.3
3,702,941	+		PFLU_RS16320	0.84	+1.3
3,702,941	+		PFLU_RS16320	0.84	-1.1
3,702,941	+		PFLU_RS16320	0.84	-0.3
3,702,941	+		PFLU_RS16320	0.84	-1.5
3,702,941	+		PFLU_RS16320	0.84	+0.7
3,702,941	+		PFLU_RS16320	0.84	-0.7
3,702,941	+		PFLU_RS16320	0.84	+1.1
3,702,941	+		PFLU_RS16320	0.84	+0.8
3,702,942	-		PFLU_RS16320	0.84	-0.3
3,702,942	-		PFLU_RS16320	0.84	-0.5
3,702,942	-		PFLU_RS16320	0.84	+0.0
3,702,942	-		PFLU_RS16320	0.84	+4.0
3,702,942	-		PFLU_RS16320	0.84	-1.5
3,702,951	+		PFLU_RS16320	0.87	-1.1
3,702,951	+		PFLU_RS16320	0.87	-0.6
3,702,952	-		PFLU_RS16320	0.87	+1.1
3,702,982	+				-1.7
3,703,016	+				+0.0
3,703,016	+				+0.5
3,703,017	-				-1.7
3,703,017	-				-0.3
3,703,017	-				+0.7
3,703,020	-				-0.7
3,703,020	-				+0.4
3,703,022	+				+1.9
3,703,023	-				-0.1
3,703,036	+				-0.5
3,703,036	+				-0.3
3,703,037	-				-1.3
3,703,037	-				-2.0
3,703,132	+		PFLU_RS16325	0.15	+1.4
3,703,148	+		PFLU_RS16325	0.16	+0.7
3,703,148	+		PFLU_RS16325	0.16	+0.9
3,703,148	+		PFLU_RS16325	0.16	+0.8
3,703,148	+		PFLU_RS16325	0.16	+0.6
3,703,148	+		PFLU_RS16325	0.16	+1.0
3,703,148	+		PFLU_RS16325	0.16	-1.0
3,703,148	+		PFLU_RS16325	0.16	+1.3
3,703,148	+		PFLU_RS16325	0.16	-1.0
3,703,148	+		PFLU_RS16325	0.16	+0.2
3,703,148	+		PFLU_RS16325	0.16	+0.3
3,703,148	+		PFLU_RS16325	0.16	+0.6
3,703,148	+		PFLU_RS16325	0.16	+0.3
3,703,148	+		PFLU_RS16325	0.16	-1.3
3,703,148	+		PFLU_RS16325	0.16	+0.3
3,703,148	+		PFLU_RS16325	0.16	-0.7
3,703,148	+		PFLU_RS16325	0.16	-0.3
3,703,148	+		PFLU_RS16325	0.16	+0.0
3,703,148	+		PFLU_RS16325	0.16	+1.2
3,703,149	-		PFLU_RS16325	0.16	-0.7
3,703,149	-		PFLU_RS16325	0.16	+0.6
3,703,149	-		PFLU_RS16325	0.16	-0.8
3,703,149	-		PFLU_RS16325	0.16	+0.3
3,703,149	-		PFLU_RS16325	0.16	-1.0
3,703,149	-		PFLU_RS16325	0.16	+0.9
3,703,149	-		PFLU_RS16325	0.16	+1.7
3,703,149	-		PFLU_RS16325	0.16	-0.1
3,703,149	-		PFLU_RS16325	0.16	+0.4
3,703,149	-		PFLU_RS16325	0.16	-1.7
3,703,149	-		PFLU_RS16325	0.16	-1.0
3,703,149	-		PFLU_RS16325	0.16	-1.1
3,703,149	-		PFLU_RS16325	0.16	+0.4
3,703,152	+		PFLU_RS16325	0.17	-1.5
3,703,152	+		PFLU_RS16325	0.17	-0.4
3,703,152	+		PFLU_RS16325	0.17	+0.2
3,703,152	+		PFLU_RS16325	0.17	-0.1
3,703,152	+		PFLU_RS16325	0.17	+0.1
3,703,153	-		PFLU_RS16325	0.17	-0.9
3,703,153	-		PFLU_RS16325	0.17	+0.1
3,703,153	-		PFLU_RS16325	0.17	+0.9
3,703,153	-		PFLU_RS16325	0.17	-0.1
3,703,153	-		PFLU_RS16325	0.17	+1.9
3,703,153	-		PFLU_RS16325	0.17	-0.1
3,703,233	+		PFLU_RS16325	0.25	-0.4
3,703,233	+		PFLU_RS16325	0.25	+0.9
3,703,234	-		PFLU_RS16325	0.25	+1.1
3,703,234	-		PFLU_RS16325	0.25	+0.9
3,703,234	-		PFLU_RS16325	0.25	+0.4
3,703,234	-		PFLU_RS16325	0.25	+2.4
3,703,281	+		PFLU_RS16325	0.29	+0.3
3,703,281	+		PFLU_RS16325	0.29	+0.9
3,703,281	+		PFLU_RS16325	0.29	-0.5
3,703,281	+		PFLU_RS16325	0.29	+0.1
3,703,282	-		PFLU_RS16325	0.29	-1.9
3,703,282	-		PFLU_RS16325	0.29	-0.6
3,703,282	-		PFLU_RS16325	0.29	-0.0
3,703,282	-		PFLU_RS16325	0.29	+0.9
3,703,282	-		PFLU_RS16325	0.29	+0.0
3,703,282	-		PFLU_RS16325	0.29	+1.6
3,703,282	-		PFLU_RS16325	0.29	-1.1
3,703,439	+		PFLU_RS16325	0.45	-0.1
3,703,439	+		PFLU_RS16325	0.45	+0.3
3,703,439	+		PFLU_RS16325	0.45	-0.8
3,703,439	+		PFLU_RS16325	0.45	-1.0
3,703,439	+		PFLU_RS16325	0.45	+0.5
3,703,439	+		PFLU_RS16325	0.45	-0.4
3,703,440	-		PFLU_RS16325	0.45	-0.7
3,703,440	-		PFLU_RS16325	0.45	-1.1
3,703,440	-		PFLU_RS16325	0.45	-0.2
3,703,440	-		PFLU_RS16325	0.45	+0.3
3,703,440	-		PFLU_RS16325	0.45	-2.1
3,703,442	+		PFLU_RS16325	0.45	-0.9
3,703,443	-		PFLU_RS16325	0.45	-0.0
3,703,443	-		PFLU_RS16325	0.45	-1.7
3,703,443	-		PFLU_RS16325	0.45	-0.5
3,703,458	+		PFLU_RS16325	0.47	-0.7
3,703,470	+		PFLU_RS16325	0.48	-2.8
3,703,472	+		PFLU_RS16325	0.48	-1.1
3,703,473	-		PFLU_RS16325	0.48	-0.5
3,703,473	-		PFLU_RS16325	0.48	-1.2
3,703,473	-		PFLU_RS16325	0.48	-3.2
3,703,486	-		PFLU_RS16325	0.50	-0.2
3,703,517	+		PFLU_RS16325	0.53	-1.9
3,703,661	-		PFLU_RS16325	0.67	-0.5
3,703,661	-		PFLU_RS16325	0.67	+2.7
3,703,914	+				+1.1
3,703,917	+				-0.3
3,703,917	+				-0.7
3,703,917	+				+0.4
3,703,917	+				+0.7
3,703,917	+				-1.9
3,703,917	+				-0.4
3,703,917	+				-0.0
3,703,917	+				+2.0
3,703,918	-				-0.0
3,703,918	-				+1.5
3,703,918	-				+0.4
3,703,918	-				-0.5
3,703,918	-				-0.1
3,703,918	-				-0.1
3,703,950	+				-0.3
3,703,950	+				+0.1
3,703,950	+				+0.6
3,703,950	+				+0.9
3,703,950	+				+0.5
3,703,950	+				+1.3
3,703,950	+				+0.9
3,703,950	+				-1.2
3,703,950	+				+0.8
3,703,950	+				+0.7
3,703,950	+				+0.1
3,703,951	-				-0.9
3,703,951	-				-1.6
3,703,951	-				-0.9
3,703,951	-				-1.6
3,703,951	-				-0.1
3,703,951	-				-0.9
3,703,951	-				-2.0
3,703,953	-				+1.6
3,703,953	-				+0.4
3,703,953	-				+1.0
3,703,996	+				-0.9
3,703,996	+				-0.7
3,703,996	+				-1.1
3,703,996	+				-0.1
3,703,996	+				-0.7
3,703,996	+				+0.1
3,703,997	-				+0.9
3,703,997	-				-0.7
3,703,997	-				-1.9
3,703,997	-				-1.5
3,703,997	-				+0.7
3,703,997	-				+0.4
3,703,997	-				+0.4
3,703,997	-				-1.5
3,703,999	+				+0.1
3,703,999	+				+0.9
3,703,999	+				-1.3
3,703,999	+				+1.4
3,703,999	+				-1.8
3,703,999	+				-0.8
3,703,999	+				+0.6
3,703,999	+				+1.3
3,703,999	+				+1.1
3,703,999	+				-0.1
3,703,999	+				-1.1
3,704,000	-				-2.0
3,704,000	-				-0.7
3,704,000	-				-0.7
3,704,000	-				+1.1
3,704,000	-				+0.9
3,704,005	+				-0.4
3,704,005	+				-1.7
3,704,005	+				-0.7
3,704,005	+				+0.5
3,704,006	-				-0.9
3,704,006	-				-2.3
3,704,006	-				-2.7
3,704,006	-				+0.6
3,704,042	+				-0.0
3,704,042	+				+0.3
3,704,043	-				-0.0
3,704,099	+				-0.7
3,704,100	-				-1.5
3,704,115	+				-0.7
3,704,115	+				-1.1
3,704,123	+				-0.1
3,704,123	+				-0.6
3,704,137	+				+0.4
3,704,137	+				+1.0
3,704,137	+				+1.2
3,704,137	+				+1.3
3,704,138	-				-1.3
3,704,138	-				+0.0
3,704,142	+				+0.9
3,704,142	+				+0.9
3,704,142	+				-1.9
3,704,148	-				-0.0
3,704,270	+		PFLU_RS16330	0.20	+1.3
3,704,270	+		PFLU_RS16330	0.20	+2.3
3,704,270	+		PFLU_RS16330	0.20	+1.9
3,704,270	+		PFLU_RS16330	0.20	+0.6
3,704,270	+		PFLU_RS16330	0.20	+0.9
3,704,270	+		PFLU_RS16330	0.20	+0.3
3,704,271	-		PFLU_RS16330	0.20	-1.1
3,704,271	-		PFLU_RS16330	0.20	-0.6
3,704,271	-		PFLU_RS16330	0.20	-0.4
3,704,325	+		PFLU_RS16330	0.28	+0.3
3,704,333	+		PFLU_RS16330	0.29	-0.4
3,704,334	-		PFLU_RS16330	0.29	+0.3
3,704,334	-		PFLU_RS16330	0.29	+1.4
3,704,351	+		PFLU_RS16330	0.32	+0.2
3,704,399	-		PFLU_RS16330	0.39	+0.0
3,704,446	+		PFLU_RS16330	0.46	+0.7
3,704,446	+		PFLU_RS16330	0.46	+1.3
3,704,446	+		PFLU_RS16330	0.46	+0.4
3,704,446	+		PFLU_RS16330	0.46	-0.3
3,704,446	+		PFLU_RS16330	0.46	-0.3
3,704,446	+		PFLU_RS16330	0.46	+1.3
3,704,446	+		PFLU_RS16330	0.46	-1.3
3,704,446	+		PFLU_RS16330	0.46	+0.6
3,704,446	+		PFLU_RS16330	0.46	-0.7
3,704,447	-		PFLU_RS16330	0.46	-1.3
3,704,447	-		PFLU_RS16330	0.46	-0.1
3,704,447	-		PFLU_RS16330	0.46	-0.3
3,704,447	-		PFLU_RS16330	0.46	+0.1
3,704,447	-		PFLU_RS16330	0.46	+1.0
3,704,447	-		PFLU_RS16330	0.46	-0.5
3,704,447	-		PFLU_RS16330	0.46	-0.0
3,704,447	-		PFLU_RS16330	0.46	-0.1
3,704,447	-		PFLU_RS16330	0.46	+1.2
3,704,462	-		PFLU_RS16330	0.48	-0.6
3,704,466	+		PFLU_RS16330	0.49	+1.2
3,704,466	+		PFLU_RS16330	0.49	+0.4
3,704,466	+		PFLU_RS16330	0.49	-0.1
3,704,467	-		PFLU_RS16330	0.49	-1.1
3,704,467	-		PFLU_RS16330	0.49	-0.3
3,704,467	-		PFLU_RS16330	0.49	+0.1
3,704,467	-		PFLU_RS16330	0.49	-0.9
3,704,467	-		PFLU_RS16330	0.49	-0.7
3,704,467	-		PFLU_RS16330	0.49	+2.0
3,704,467	-		PFLU_RS16330	0.49	-0.6
3,704,467	-		PFLU_RS16330	0.49	+1.2
3,704,467	-		PFLU_RS16330	0.49	-0.3
3,704,467	-		PFLU_RS16330	0.49	-0.3
3,704,482	+		PFLU_RS16330	0.51	-0.4
3,704,482	+		PFLU_RS16330	0.51	-0.3
3,704,482	+		PFLU_RS16330	0.51	+0.2
3,704,482	+		PFLU_RS16330	0.51	+1.0
3,704,483	-		PFLU_RS16330	0.51	-2.6
3,704,483	-		PFLU_RS16330	0.51	-0.4
3,704,483	-		PFLU_RS16330	0.51	+0.4
3,704,483	-		PFLU_RS16330	0.51	-0.5
3,704,486	+		PFLU_RS16330	0.52	-0.1
3,704,487	-		PFLU_RS16330	0.52	+1.8
3,704,493	+		PFLU_RS16330	0.53	-0.4
3,704,494	-		PFLU_RS16330	0.53	+0.0
3,704,589	+		PFLU_RS16330	0.67	-1.5
3,704,590	-		PFLU_RS16330	0.67	+0.2
3,704,590	-		PFLU_RS16330	0.67	+0.7
3,704,590	-		PFLU_RS16330	0.67	+0.5
3,704,590	-		PFLU_RS16330	0.67	-0.5
3,704,590	-		PFLU_RS16330	0.67	+0.9
3,704,600	+		PFLU_RS16330	0.69	+0.5
3,704,601	-		PFLU_RS16330	0.69	+2.2
3,704,710	-		PFLU_RS16330	0.85	-0.7
3,704,710	-		PFLU_RS16330	0.85	-2.5
3,704,764	+				+0.0
3,704,764	+				-2.7
3,704,765	-				+0.9
3,704,789	+				+0.9
3,704,789	+				+0.1
3,704,789	+				+0.9
3,704,789	+				+0.2
3,704,789	+				+0.1
3,704,790	-				+0.4
3,704,790	-				+1.4
3,704,803	+				-1.5
3,704,803	+				+1.4
3,704,803	+				-0.1
3,704,803	+				-0.1
3,704,803	+				-0.0
3,704,803	+				-0.1
3,704,804	-				+0.1
3,704,871	-		PFLU_RS16335	0.10	+0.9
3,704,957	+		PFLU_RS16335	0.24	+1.2
3,704,957	+		PFLU_RS16335	0.24	+0.1
3,704,957	+		PFLU_RS16335	0.24	-0.5
3,704,957	+		PFLU_RS16335	0.24	-0.7
3,704,957	+		PFLU_RS16335	0.24	-0.1
3,704,957	+		PFLU_RS16335	0.24	-0.4
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