Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_900

Experiment: LB, pH10

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_899 and Ac3H11_900 are separated by 84 nucleotidesAc3H11_900 and Ac3H11_901 are separated by 161 nucleotides Ac3H11_899 - Cell division protein FtsH (EC 3.4.24.-), at 9,199 to 11,226 _899 Ac3H11_900 - N-acetylglutamate synthase (EC 2.3.1.1), at 11,311 to 12,657 _900 Ac3H11_901 - Beta-lactamase (EC 3.5.2.6), at 12,819 to 13,700 _901 Position (kb) 11 12 13Strain fitness (log2 ratio) -2 -1 0 1at 10.429 kb on + strand, within Ac3H11_899at 10.429 kb on + strand, within Ac3H11_899at 10.429 kb on + strand, within Ac3H11_899at 10.429 kb on + strand, within Ac3H11_899at 10.430 kb on - strand, within Ac3H11_899at 10.430 kb on - strand, within Ac3H11_899at 10.591 kb on + strand, within Ac3H11_899at 10.592 kb on - strand, within Ac3H11_899at 10.592 kb on - strand, within Ac3H11_899at 10.592 kb on - strand, within Ac3H11_899at 10.792 kb on + strand, within Ac3H11_899at 10.792 kb on + strand, within Ac3H11_899at 10.792 kb on + strand, within Ac3H11_899at 10.792 kb on + strand, within Ac3H11_899at 10.823 kb on - strand, within Ac3H11_899at 11.222 kb on + strandat 11.222 kb on + strandat 11.222 kb on + strandat 11.222 kb on + strandat 11.222 kb on + strandat 11.222 kb on + strandat 11.223 kb on - strandat 12.669 kb on - strandat 12.907 kb on + strandat 13.387 kb on + strand, within Ac3H11_901at 13.387 kb on + strand, within Ac3H11_901

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH10
remove
10,429 + Ac3H11_899 0.61 -0.7
10,429 + Ac3H11_899 0.61 -1.0
10,429 + Ac3H11_899 0.61 -0.5
10,429 + Ac3H11_899 0.61 +0.7
10,430 - Ac3H11_899 0.61 -0.3
10,430 - Ac3H11_899 0.61 -0.9
10,591 + Ac3H11_899 0.69 +0.8
10,592 - Ac3H11_899 0.69 -1.4
10,592 - Ac3H11_899 0.69 +0.8
10,592 - Ac3H11_899 0.69 -0.5
10,792 + Ac3H11_899 0.79 +0.9
10,792 + Ac3H11_899 0.79 -1.2
10,792 + Ac3H11_899 0.79 -0.5
10,792 + Ac3H11_899 0.79 -1.3
10,823 - Ac3H11_899 0.80 -0.9
11,222 + +0.9
11,222 + +1.3
11,222 + +1.5
11,222 + +1.4
11,222 + -1.8
11,222 + +1.6
11,223 - -1.1
12,669 - +0.7
12,907 + +0.6
13,387 + Ac3H11_901 0.64 -1.0
13,387 + Ac3H11_901 0.64 -1.7

Or see this region's nucleotide sequence