Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_838

Experiment: LB, pH10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_836 and Ac3H11_837 overlap by 14 nucleotidesAc3H11_837 and Ac3H11_838 overlap by 4 nucleotidesAc3H11_838 and Ac3H11_839 are separated by 138 nucleotidesAc3H11_839 and Ac3H11_840 are separated by 9 nucleotides Ac3H11_836 - Ubiquinone biosynthesis monooxygenase UbiB, at 118,606 to 119,946 _836 Ac3H11_837 - conserved hypothetical protein, at 119,933 to 120,508 _837 Ac3H11_838 - transcriptional regulator, TetR family, at 120,505 to 121,374 _838 Ac3H11_839 - transcriptional regulator, MerR family, at 121,513 to 121,707 _839 Ac3H11_840 - putative cinnamoyl-CoA reductase, at 121,717 to 122,745 _840 Position (kb) 120 121 122Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 119.934 kb on + strandat 119.934 kb on + strandat 119.934 kb on + strandat 119.934 kb on + strandat 119.934 kb on + strandat 120.012 kb on + strand, within Ac3H11_837at 120.012 kb on + strand, within Ac3H11_837at 120.012 kb on + strand, within Ac3H11_837at 120.012 kb on + strand, within Ac3H11_837at 120.012 kb on + strand, within Ac3H11_837at 120.012 kb on + strand, within Ac3H11_837at 120.012 kb on + strand, within Ac3H11_837at 120.012 kb on + strand, within Ac3H11_837at 120.012 kb on + strand, within Ac3H11_837at 120.012 kb on + strand, within Ac3H11_837at 120.012 kb on + strand, within Ac3H11_837at 120.012 kb on + strand, within Ac3H11_837at 120.012 kb on + strand, within Ac3H11_837at 120.012 kb on + strand, within Ac3H11_837at 120.012 kb on + strand, within Ac3H11_837at 120.012 kb on + strand, within Ac3H11_837at 120.012 kb on + strand, within Ac3H11_837at 120.012 kb on + strand, within Ac3H11_837at 120.012 kb on + strand, within Ac3H11_837at 120.013 kb on - strand, within Ac3H11_837at 120.013 kb on - strand, within Ac3H11_837at 120.013 kb on - strand, within Ac3H11_837at 120.013 kb on - strand, within Ac3H11_837at 120.013 kb on - strand, within Ac3H11_837at 120.013 kb on - strand, within Ac3H11_837at 120.013 kb on - strand, within Ac3H11_837at 120.013 kb on - strand, within Ac3H11_837at 120.013 kb on - strand, within Ac3H11_837at 120.013 kb on - strand, within Ac3H11_837at 120.013 kb on - strand, within Ac3H11_837at 120.013 kb on - strand, within Ac3H11_837at 120.013 kb on - strand, within Ac3H11_837at 120.013 kb on - strand, within Ac3H11_837at 120.013 kb on - strand, within Ac3H11_837at 120.013 kb on - strand, within Ac3H11_837at 120.013 kb on - strand, within Ac3H11_837at 120.013 kb on - strand, within Ac3H11_837at 120.013 kb on - strand, within Ac3H11_837at 120.013 kb on - strand, within Ac3H11_837at 120.344 kb on + strand, within Ac3H11_837at 120.345 kb on - strand, within Ac3H11_837at 120.345 kb on - strand, within Ac3H11_837at 120.345 kb on - strand, within Ac3H11_837at 120.345 kb on - strand, within Ac3H11_837at 120.399 kb on + strand, within Ac3H11_837at 120.400 kb on - strand, within Ac3H11_837at 120.400 kb on - strand, within Ac3H11_837at 120.455 kb on + strandat 120.456 kb on - strandat 120.863 kb on + strand, within Ac3H11_838at 120.863 kb on + strand, within Ac3H11_838at 120.863 kb on + strand, within Ac3H11_838at 120.863 kb on + strand, within Ac3H11_838at 120.863 kb on + strand, within Ac3H11_838at 120.864 kb on - strand, within Ac3H11_838at 120.884 kb on + strand, within Ac3H11_838at 120.885 kb on - strand, within Ac3H11_838at 120.885 kb on - strand, within Ac3H11_838at 120.885 kb on - strand, within Ac3H11_838at 120.893 kb on + strand, within Ac3H11_838at 120.893 kb on + strand, within Ac3H11_838at 120.893 kb on + strand, within Ac3H11_838at 120.893 kb on + strand, within Ac3H11_838at 120.893 kb on + strand, within Ac3H11_838at 120.894 kb on - strand, within Ac3H11_838at 120.894 kb on - strand, within Ac3H11_838at 120.894 kb on - strand, within Ac3H11_838at 120.894 kb on - strand, within Ac3H11_838at 121.193 kb on + strand, within Ac3H11_838at 121.193 kb on + strand, within Ac3H11_838at 121.226 kb on + strand, within Ac3H11_838at 121.226 kb on + strand, within Ac3H11_838at 121.226 kb on + strand, within Ac3H11_838at 121.226 kb on + strand, within Ac3H11_838at 121.226 kb on + strand, within Ac3H11_838at 121.226 kb on + strand, within Ac3H11_838at 121.227 kb on - strand, within Ac3H11_838at 121.227 kb on - strand, within Ac3H11_838at 121.227 kb on - strand, within Ac3H11_838at 121.227 kb on - strand, within Ac3H11_838at 121.227 kb on - strand, within Ac3H11_838at 121.227 kb on - strand, within Ac3H11_838at 121.227 kb on - strand, within Ac3H11_838at 121.227 kb on - strand, within Ac3H11_838at 121.227 kb on - strand, within Ac3H11_838at 121.232 kb on + strand, within Ac3H11_838at 121.232 kb on + strand, within Ac3H11_838at 121.232 kb on + strand, within Ac3H11_838at 121.232 kb on + strand, within Ac3H11_838at 121.232 kb on + strand, within Ac3H11_838at 121.232 kb on + strand, within Ac3H11_838at 121.232 kb on + strand, within Ac3H11_838at 121.233 kb on - strand, within Ac3H11_838at 121.233 kb on - strand, within Ac3H11_838at 121.233 kb on - strand, within Ac3H11_838at 121.233 kb on - strand, within Ac3H11_838at 121.233 kb on - strand, within Ac3H11_838at 121.233 kb on - strand, within Ac3H11_838at 121.233 kb on - strand, within Ac3H11_838at 121.596 kb on - strand, within Ac3H11_839at 121.596 kb on - strand, within Ac3H11_839at 121.596 kb on - strand, within Ac3H11_839at 121.596 kb on - strand, within Ac3H11_839at 121.596 kb on - strand, within Ac3H11_839at 121.788 kb on - strandat 121.788 kb on - strandat 121.798 kb on + strandat 121.859 kb on + strand, within Ac3H11_840at 121.859 kb on + strand, within Ac3H11_840at 121.859 kb on + strand, within Ac3H11_840at 121.859 kb on + strand, within Ac3H11_840at 121.859 kb on + strand, within Ac3H11_840at 121.859 kb on + strand, within Ac3H11_840at 121.859 kb on + strand, within Ac3H11_840at 121.859 kb on + strand, within Ac3H11_840at 121.859 kb on + strand, within Ac3H11_840at 121.860 kb on - strand, within Ac3H11_840at 121.860 kb on - strand, within Ac3H11_840at 121.860 kb on - strand, within Ac3H11_840at 121.860 kb on - strand, within Ac3H11_840at 121.860 kb on - strand, within Ac3H11_840at 122.009 kb on + strand, within Ac3H11_840at 122.279 kb on + strand, within Ac3H11_840at 122.279 kb on + strand, within Ac3H11_840at 122.280 kb on - strand, within Ac3H11_840at 122.280 kb on - strand, within Ac3H11_840at 122.280 kb on - strand, within Ac3H11_840

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH10
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119,934 + +0.8
119,934 + +0.3
119,934 + -2.3
119,934 + +1.3
119,934 + -1.6
120,012 + Ac3H11_837 0.14 -1.7
120,012 + Ac3H11_837 0.14 -0.8
120,012 + Ac3H11_837 0.14 -1.9
120,012 + Ac3H11_837 0.14 -2.5
120,012 + Ac3H11_837 0.14 -1.7
120,012 + Ac3H11_837 0.14 -1.2
120,012 + Ac3H11_837 0.14 -0.6
120,012 + Ac3H11_837 0.14 -0.1
120,012 + Ac3H11_837 0.14 +0.5
120,012 + Ac3H11_837 0.14 +1.7
120,012 + Ac3H11_837 0.14 +1.9
120,012 + Ac3H11_837 0.14 +0.1
120,012 + Ac3H11_837 0.14 +0.6
120,012 + Ac3H11_837 0.14 -1.0
120,012 + Ac3H11_837 0.14 -1.7
120,012 + Ac3H11_837 0.14 -1.8
120,012 + Ac3H11_837 0.14 -2.0
120,012 + Ac3H11_837 0.14 -1.9
120,012 + Ac3H11_837 0.14 -1.7
120,013 - Ac3H11_837 0.14 -2.3
120,013 - Ac3H11_837 0.14 -0.8
120,013 - Ac3H11_837 0.14 -0.4
120,013 - Ac3H11_837 0.14 +0.3
120,013 - Ac3H11_837 0.14 +0.8
120,013 - Ac3H11_837 0.14 +1.5
120,013 - Ac3H11_837 0.14 -3.2
120,013 - Ac3H11_837 0.14 +1.1
120,013 - Ac3H11_837 0.14 +1.3
120,013 - Ac3H11_837 0.14 +0.5
120,013 - Ac3H11_837 0.14 -0.4
120,013 - Ac3H11_837 0.14 -0.7
120,013 - Ac3H11_837 0.14 +0.2
120,013 - Ac3H11_837 0.14 -0.1
120,013 - Ac3H11_837 0.14 -1.5
120,013 - Ac3H11_837 0.14 -1.7
120,013 - Ac3H11_837 0.14 +1.6
120,013 - Ac3H11_837 0.14 -1.8
120,013 - Ac3H11_837 0.14 +2.2
120,013 - Ac3H11_837 0.14 +0.4
120,344 + Ac3H11_837 0.71 -2.9
120,345 - Ac3H11_837 0.72 +0.3
120,345 - Ac3H11_837 0.72 -0.2
120,345 - Ac3H11_837 0.72 +0.3
120,345 - Ac3H11_837 0.72 +0.3
120,399 + Ac3H11_837 0.81 -0.3
120,400 - Ac3H11_837 0.81 +0.2
120,400 - Ac3H11_837 0.81 -0.6
120,455 + +0.0
120,456 - -0.4
120,863 + Ac3H11_838 0.41 -0.4
120,863 + Ac3H11_838 0.41 +1.6
120,863 + Ac3H11_838 0.41 +0.4
120,863 + Ac3H11_838 0.41 +1.7
120,863 + Ac3H11_838 0.41 +0.7
120,864 - Ac3H11_838 0.41 -1.0
120,884 + Ac3H11_838 0.44 -0.4
120,885 - Ac3H11_838 0.44 +1.0
120,885 - Ac3H11_838 0.44 +0.7
120,885 - Ac3H11_838 0.44 +1.0
120,893 + Ac3H11_838 0.45 +2.2
120,893 + Ac3H11_838 0.45 +1.3
120,893 + Ac3H11_838 0.45 -0.5
120,893 + Ac3H11_838 0.45 -1.4
120,893 + Ac3H11_838 0.45 +0.3
120,894 - Ac3H11_838 0.45 +0.3
120,894 - Ac3H11_838 0.45 +1.1
120,894 - Ac3H11_838 0.45 -1.5
120,894 - Ac3H11_838 0.45 -0.4
121,193 + Ac3H11_838 0.79 -2.7
121,193 + Ac3H11_838 0.79 -0.3
121,226 + Ac3H11_838 0.83 -2.7
121,226 + Ac3H11_838 0.83 -0.7
121,226 + Ac3H11_838 0.83 -0.7
121,226 + Ac3H11_838 0.83 -0.7
121,226 + Ac3H11_838 0.83 +0.2
121,226 + Ac3H11_838 0.83 +0.8
121,227 - Ac3H11_838 0.83 +1.2
121,227 - Ac3H11_838 0.83 -0.4
121,227 - Ac3H11_838 0.83 -0.6
121,227 - Ac3H11_838 0.83 +3.3
121,227 - Ac3H11_838 0.83 +0.7
121,227 - Ac3H11_838 0.83 -0.1
121,227 - Ac3H11_838 0.83 -1.9
121,227 - Ac3H11_838 0.83 +1.9
121,227 - Ac3H11_838 0.83 +1.1
121,232 + Ac3H11_838 0.84 +0.2
121,232 + Ac3H11_838 0.84 -1.8
121,232 + Ac3H11_838 0.84 +0.7
121,232 + Ac3H11_838 0.84 -0.0
121,232 + Ac3H11_838 0.84 +0.1
121,232 + Ac3H11_838 0.84 -0.7
121,232 + Ac3H11_838 0.84 -0.4
121,233 - Ac3H11_838 0.84 +0.3
121,233 - Ac3H11_838 0.84 -1.9
121,233 - Ac3H11_838 0.84 +0.7
121,233 - Ac3H11_838 0.84 +0.7
121,233 - Ac3H11_838 0.84 +2.2
121,233 - Ac3H11_838 0.84 -1.9
121,233 - Ac3H11_838 0.84 +1.5
121,596 - Ac3H11_839 0.43 +1.3
121,596 - Ac3H11_839 0.43 -1.9
121,596 - Ac3H11_839 0.43 -0.9
121,596 - Ac3H11_839 0.43 +0.3
121,596 - Ac3H11_839 0.43 -0.8
121,788 - -0.6
121,788 - -1.4
121,798 + -2.4
121,859 + Ac3H11_840 0.14 +1.9
121,859 + Ac3H11_840 0.14 +0.0
121,859 + Ac3H11_840 0.14 +0.1
121,859 + Ac3H11_840 0.14 -1.6
121,859 + Ac3H11_840 0.14 -1.9
121,859 + Ac3H11_840 0.14 -0.6
121,859 + Ac3H11_840 0.14 +1.2
121,859 + Ac3H11_840 0.14 +0.5
121,859 + Ac3H11_840 0.14 +0.1
121,860 - Ac3H11_840 0.14 +3.1
121,860 - Ac3H11_840 0.14 -0.5
121,860 - Ac3H11_840 0.14 -0.4
121,860 - Ac3H11_840 0.14 +1.9
121,860 - Ac3H11_840 0.14 -1.8
122,009 + Ac3H11_840 0.28 +0.5
122,279 + Ac3H11_840 0.55 -0.4
122,279 + Ac3H11_840 0.55 +1.0
122,280 - Ac3H11_840 0.55 +1.8
122,280 - Ac3H11_840 0.55 -2.0
122,280 - Ac3H11_840 0.55 -1.9

Or see this region's nucleotide sequence