Experiment: LB, pH10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_695 and Ac3H11_696 overlap by 4 nucleotides Ac3H11_696 and Ac3H11_697 overlap by 4 nucleotides Ac3H11_697 and Ac3H11_698 are separated by 18 nucleotides
Ac3H11_695 - Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1), at 52,097 to 53,164
_695
Ac3H11_696 - Dipeptide transport system permease protein DppC (TC 3.A.1.5.2), at 53,161 to 54,024
_696
Ac3H11_697 - Dipeptide transport system permease protein DppB (TC 3.A.1.5.2), at 54,021 to 54,971
_697
Ac3H11_698 - Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2); Putative hemin-binding lipoprotein, at 54,990 to 56,576
_698
Position (kb) 53
54
55 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 52.307 kb on + strand, within Ac3H11_695 at 52.307 kb on + strand, within Ac3H11_695 at 52.307 kb on + strand, within Ac3H11_695 at 52.307 kb on + strand, within Ac3H11_695 at 52.307 kb on + strand, within Ac3H11_695 at 52.308 kb on - strand, within Ac3H11_695 at 52.308 kb on - strand, within Ac3H11_695 at 52.308 kb on - strand, within Ac3H11_695 at 52.308 kb on - strand, within Ac3H11_695 at 52.377 kb on + strand, within Ac3H11_695 at 52.377 kb on + strand, within Ac3H11_695 at 52.377 kb on + strand, within Ac3H11_695 at 52.377 kb on + strand, within Ac3H11_695 at 52.378 kb on - strand, within Ac3H11_695 at 52.378 kb on - strand, within Ac3H11_695 at 52.440 kb on + strand, within Ac3H11_695 at 52.441 kb on - strand, within Ac3H11_695 at 52.441 kb on - strand, within Ac3H11_695 at 52.465 kb on - strand, within Ac3H11_695 at 53.164 kb on + strand at 53.165 kb on - strand at 53.288 kb on + strand, within Ac3H11_696 at 53.384 kb on + strand, within Ac3H11_696 at 53.385 kb on - strand, within Ac3H11_696 at 53.556 kb on - strand, within Ac3H11_696 at 53.768 kb on + strand, within Ac3H11_696 at 53.769 kb on - strand, within Ac3H11_696 at 53.932 kb on + strand, within Ac3H11_696 at 53.933 kb on - strand, within Ac3H11_696 at 54.061 kb on + strand at 54.062 kb on - strand at 54.094 kb on + strand at 54.095 kb on - strand at 54.095 kb on - strand at 54.095 kb on - strand at 54.243 kb on + strand, within Ac3H11_697 at 54.244 kb on - strand, within Ac3H11_697 at 54.337 kb on + strand, within Ac3H11_697 at 54.337 kb on + strand, within Ac3H11_697 at 54.337 kb on + strand, within Ac3H11_697 at 54.337 kb on + strand, within Ac3H11_697 at 54.337 kb on + strand, within Ac3H11_697 at 54.338 kb on - strand, within Ac3H11_697 at 54.338 kb on - strand, within Ac3H11_697 at 54.338 kb on - strand, within Ac3H11_697 at 54.338 kb on - strand, within Ac3H11_697 at 54.472 kb on + strand, within Ac3H11_697 at 54.991 kb on + strand at 54.991 kb on + strand at 54.991 kb on + strand at 54.991 kb on + strand at 54.991 kb on + strand at 54.991 kb on + strand at 54.991 kb on + strand at 54.991 kb on + strand at 54.991 kb on + strand at 54.992 kb on - strand at 54.992 kb on - strand at 54.992 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH10 remove 52,307 + Ac3H11_695 0.20 +0.2 52,307 + Ac3H11_695 0.20 -1.5 52,307 + Ac3H11_695 0.20 +0.7 52,307 + Ac3H11_695 0.20 -0.7 52,307 + Ac3H11_695 0.20 -0.1 52,308 - Ac3H11_695 0.20 -2.9 52,308 - Ac3H11_695 0.20 +0.1 52,308 - Ac3H11_695 0.20 -0.6 52,308 - Ac3H11_695 0.20 -3.4 52,377 + Ac3H11_695 0.26 +0.4 52,377 + Ac3H11_695 0.26 +0.3 52,377 + Ac3H11_695 0.26 -2.3 52,377 + Ac3H11_695 0.26 -1.2 52,378 - Ac3H11_695 0.26 -0.3 52,378 - Ac3H11_695 0.26 +0.8 52,440 + Ac3H11_695 0.32 -0.8 52,441 - Ac3H11_695 0.32 +1.1 52,441 - Ac3H11_695 0.32 +0.9 52,465 - Ac3H11_695 0.34 +1.3 53,164 + +0.9 53,165 - -0.1 53,288 + Ac3H11_696 0.15 -2.4 53,384 + Ac3H11_696 0.26 +1.4 53,385 - Ac3H11_696 0.26 -1.0 53,556 - Ac3H11_696 0.46 -1.2 53,768 + Ac3H11_696 0.70 -0.5 53,769 - Ac3H11_696 0.70 +2.0 53,932 + Ac3H11_696 0.89 -2.2 53,933 - Ac3H11_696 0.89 +1.7 54,061 + -2.4 54,062 - +1.2 54,094 + +0.7 54,095 - +3.8 54,095 - +0.1 54,095 - +0.2 54,243 + Ac3H11_697 0.23 -0.3 54,244 - Ac3H11_697 0.23 -2.1 54,337 + Ac3H11_697 0.33 -0.9 54,337 + Ac3H11_697 0.33 -2.5 54,337 + Ac3H11_697 0.33 -0.9 54,337 + Ac3H11_697 0.33 -0.1 54,337 + Ac3H11_697 0.33 -2.6 54,338 - Ac3H11_697 0.33 -1.4 54,338 - Ac3H11_697 0.33 -1.8 54,338 - Ac3H11_697 0.33 +0.3 54,338 - Ac3H11_697 0.33 +0.8 54,472 + Ac3H11_697 0.47 -2.8 54,991 + -0.2 54,991 + +4.2 54,991 + +1.1 54,991 + +1.5 54,991 + -0.0 54,991 + +0.5 54,991 + -0.4 54,991 + +2.2 54,991 + -1.9 54,992 - -0.9 54,992 - -1.5 54,992 - +1.2
Or see this region's nucleotide sequence