Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_66

Experiment: LB, pH10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_65 and Ac3H11_66 are separated by 247 nucleotidesAc3H11_66 and Ac3H11_67 overlap by 4 nucleotidesAc3H11_67 and Ac3H11_68 are separated by 115 nucleotides Ac3H11_65 - Chitinase (EC 3.2.1.14), at 67,218 to 68,690 _65 Ac3H11_66 - Benzoate transport, ATPase component, at 68,938 to 69,708 _66 Ac3H11_67 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 69,705 to 70,448 _67 Ac3H11_68 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 70,564 to 71,550 _68 Position (kb) 68 69 70Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 68.028 kb on + strand, within Ac3H11_65at 68.046 kb on + strand, within Ac3H11_65at 68.047 kb on - strand, within Ac3H11_65at 68.047 kb on - strand, within Ac3H11_65at 68.086 kb on - strand, within Ac3H11_65at 68.152 kb on - strand, within Ac3H11_65at 68.152 kb on - strand, within Ac3H11_65at 68.331 kb on + strand, within Ac3H11_65at 68.331 kb on + strand, within Ac3H11_65at 68.331 kb on + strand, within Ac3H11_65at 68.331 kb on + strand, within Ac3H11_65at 68.331 kb on + strand, within Ac3H11_65at 68.331 kb on + strand, within Ac3H11_65at 68.332 kb on - strand, within Ac3H11_65at 68.341 kb on - strand, within Ac3H11_65at 68.341 kb on - strand, within Ac3H11_65at 68.388 kb on + strand, within Ac3H11_65at 68.388 kb on + strand, within Ac3H11_65at 68.389 kb on - strand, within Ac3H11_65at 68.421 kb on + strand, within Ac3H11_65at 68.421 kb on + strand, within Ac3H11_65at 68.421 kb on + strand, within Ac3H11_65at 68.422 kb on - strand, within Ac3H11_65at 68.422 kb on - strand, within Ac3H11_65at 68.422 kb on - strand, within Ac3H11_65at 68.422 kb on - strand, within Ac3H11_65at 68.422 kb on - strand, within Ac3H11_65at 68.422 kb on - strand, within Ac3H11_65at 68.422 kb on - strand, within Ac3H11_65at 68.541 kb on + strand, within Ac3H11_65at 68.541 kb on + strand, within Ac3H11_65at 68.541 kb on + strand, within Ac3H11_65at 68.542 kb on - strand, within Ac3H11_65at 68.589 kb on + strandat 68.589 kb on + strandat 68.589 kb on + strandat 68.590 kb on - strandat 68.590 kb on - strandat 68.667 kb on + strandat 68.668 kb on - strandat 68.668 kb on - strandat 68.668 kb on - strandat 68.668 kb on - strandat 68.668 kb on - strandat 68.670 kb on + strandat 68.671 kb on - strandat 68.671 kb on - strandat 68.693 kb on + strandat 68.693 kb on + strandat 68.693 kb on + strandat 68.693 kb on + strandat 68.694 kb on - strandat 68.694 kb on - strandat 68.694 kb on - strandat 68.697 kb on + strandat 68.697 kb on + strandat 68.697 kb on + strandat 68.697 kb on + strandat 68.697 kb on + strandat 68.697 kb on + strandat 68.698 kb on - strandat 68.698 kb on - strandat 68.698 kb on - strandat 68.698 kb on - strandat 69.070 kb on + strand, within Ac3H11_66at 69.070 kb on + strand, within Ac3H11_66at 69.070 kb on + strand, within Ac3H11_66at 69.071 kb on - strand, within Ac3H11_66at 69.071 kb on - strand, within Ac3H11_66at 69.429 kb on + strand, within Ac3H11_66at 69.430 kb on - strand, within Ac3H11_66at 69.430 kb on - strand, within Ac3H11_66at 69.451 kb on + strand, within Ac3H11_66at 69.451 kb on + strand, within Ac3H11_66at 69.451 kb on + strand, within Ac3H11_66at 69.451 kb on + strand, within Ac3H11_66at 69.451 kb on + strand, within Ac3H11_66at 69.452 kb on - strand, within Ac3H11_66at 69.452 kb on - strand, within Ac3H11_66at 69.774 kb on + strandat 69.972 kb on + strand, within Ac3H11_67at 69.973 kb on - strand, within Ac3H11_67at 70.507 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH10
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68,028 + Ac3H11_65 0.55 -0.1
68,046 + Ac3H11_65 0.56 +0.9
68,047 - Ac3H11_65 0.56 +1.4
68,047 - Ac3H11_65 0.56 +0.4
68,086 - Ac3H11_65 0.59 -1.1
68,152 - Ac3H11_65 0.63 -0.8
68,152 - Ac3H11_65 0.63 +1.3
68,331 + Ac3H11_65 0.76 +2.0
68,331 + Ac3H11_65 0.76 +0.8
68,331 + Ac3H11_65 0.76 +0.1
68,331 + Ac3H11_65 0.76 +0.7
68,331 + Ac3H11_65 0.76 +0.4
68,331 + Ac3H11_65 0.76 +0.7
68,332 - Ac3H11_65 0.76 -1.2
68,341 - Ac3H11_65 0.76 -0.8
68,341 - Ac3H11_65 0.76 -1.8
68,388 + Ac3H11_65 0.79 -1.1
68,388 + Ac3H11_65 0.79 -0.3
68,389 - Ac3H11_65 0.79 +0.6
68,421 + Ac3H11_65 0.82 +1.1
68,421 + Ac3H11_65 0.82 -0.5
68,421 + Ac3H11_65 0.82 +0.2
68,422 - Ac3H11_65 0.82 +0.0
68,422 - Ac3H11_65 0.82 -2.4
68,422 - Ac3H11_65 0.82 -0.4
68,422 - Ac3H11_65 0.82 +0.2
68,422 - Ac3H11_65 0.82 -2.4
68,422 - Ac3H11_65 0.82 -0.9
68,422 - Ac3H11_65 0.82 +0.1
68,541 + Ac3H11_65 0.90 +2.6
68,541 + Ac3H11_65 0.90 +1.2
68,541 + Ac3H11_65 0.90 +1.6
68,542 - Ac3H11_65 0.90 -2.8
68,589 + +1.1
68,589 + +0.5
68,589 + -0.8
68,590 - -2.5
68,590 - -2.9
68,667 + +2.2
68,668 - +1.1
68,668 - -2.6
68,668 - -2.9
68,668 - -1.4
68,668 - +0.6
68,670 + +0.4
68,671 - -0.6
68,671 - -0.8
68,693 + +0.4
68,693 + -0.9
68,693 + +2.2
68,693 + +1.3
68,694 - -2.5
68,694 - -0.4
68,694 - +1.3
68,697 + -1.5
68,697 + +0.3
68,697 + +0.6
68,697 + -2.2
68,697 + -0.1
68,697 + +0.1
68,698 - +1.6
68,698 - +0.7
68,698 - -1.6
68,698 - -0.3
69,070 + Ac3H11_66 0.17 +0.9
69,070 + Ac3H11_66 0.17 -2.5
69,070 + Ac3H11_66 0.17 -0.6
69,071 - Ac3H11_66 0.17 +0.5
69,071 - Ac3H11_66 0.17 -1.1
69,429 + Ac3H11_66 0.64 -0.6
69,430 - Ac3H11_66 0.64 -0.6
69,430 - Ac3H11_66 0.64 -1.6
69,451 + Ac3H11_66 0.67 -0.7
69,451 + Ac3H11_66 0.67 -0.1
69,451 + Ac3H11_66 0.67 +1.3
69,451 + Ac3H11_66 0.67 -2.9
69,451 + Ac3H11_66 0.67 +0.6
69,452 - Ac3H11_66 0.67 -1.4
69,452 - Ac3H11_66 0.67 +1.3
69,774 + -0.5
69,972 + Ac3H11_67 0.36 -0.2
69,973 - Ac3H11_67 0.36 +0.5
70,507 - +0.9

Or see this region's nucleotide sequence