Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4900

Experiment: LB, pH10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4898 and Ac3H11_4899 are separated by 140 nucleotidesAc3H11_4899 and Ac3H11_4900 overlap by 17 nucleotidesAc3H11_4900 and Ac3H11_4901 are separated by 6 nucleotidesAc3H11_4901 and Ac3H11_4902 are separated by 160 nucleotides Ac3H11_4898 - Calcium-binding EF-hand-containing protein, at 64,606 to 64,935 _4898 Ac3H11_4899 - ABC transporter ATP-binding protein, at 65,076 to 65,870 _4899 Ac3H11_4900 - Putative amino acid ABC transporter, permease protein, at 65,854 to 66,507 _4900 Ac3H11_4901 - amino acid ABC transporter, permease protein, at 66,514 to 67,188 _4901 Ac3H11_4902 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 67,349 to 68,170 _4902 Position (kb) 65 66 67Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 64.997 kb on + strandat 64.997 kb on + strandat 64.998 kb on - strandat 65.364 kb on - strand, within Ac3H11_4899at 65.774 kb on - strand, within Ac3H11_4899at 65.774 kb on - strand, within Ac3H11_4899at 65.774 kb on - strand, within Ac3H11_4899at 65.774 kb on - strand, within Ac3H11_4899at 65.853 kb on - strandat 65.853 kb on - strandat 65.927 kb on + strand, within Ac3H11_4900at 65.927 kb on + strand, within Ac3H11_4900at 65.948 kb on + strand, within Ac3H11_4900at 65.948 kb on + strand, within Ac3H11_4900at 65.966 kb on + strand, within Ac3H11_4900at 65.966 kb on + strand, within Ac3H11_4900at 65.966 kb on + strand, within Ac3H11_4900at 65.966 kb on + strand, within Ac3H11_4900at 65.966 kb on + strand, within Ac3H11_4900at 65.966 kb on + strand, within Ac3H11_4900at 65.967 kb on - strand, within Ac3H11_4900at 65.967 kb on - strand, within Ac3H11_4900at 65.967 kb on - strand, within Ac3H11_4900at 65.967 kb on - strand, within Ac3H11_4900at 65.967 kb on - strand, within Ac3H11_4900at 65.967 kb on - strand, within Ac3H11_4900at 66.291 kb on - strand, within Ac3H11_4900at 66.337 kb on + strand, within Ac3H11_4900at 66.337 kb on + strand, within Ac3H11_4900at 66.337 kb on + strandat 66.337 kb on + strand, within Ac3H11_4900at 66.337 kb on + strand, within Ac3H11_4900at 66.337 kb on + strand, within Ac3H11_4900at 66.337 kb on + strand, within Ac3H11_4900at 66.338 kb on - strand, within Ac3H11_4900at 66.338 kb on - strand, within Ac3H11_4900at 66.338 kb on - strand, within Ac3H11_4900at 66.338 kb on - strand, within Ac3H11_4900at 66.341 kb on + strand, within Ac3H11_4900at 66.342 kb on - strand, within Ac3H11_4900at 66.406 kb on + strand, within Ac3H11_4900at 66.406 kb on + strand, within Ac3H11_4900at 66.515 kb on + strandat 66.515 kb on + strandat 66.515 kb on + strandat 66.515 kb on + strandat 66.584 kb on + strand, within Ac3H11_4901at 66.584 kb on + strand, within Ac3H11_4901at 66.584 kb on + strand, within Ac3H11_4901at 66.584 kb on + strand, within Ac3H11_4901at 66.653 kb on + strand, within Ac3H11_4901at 66.653 kb on + strand, within Ac3H11_4901at 66.654 kb on - strand, within Ac3H11_4901at 66.654 kb on - strand, within Ac3H11_4901at 66.867 kb on - strand, within Ac3H11_4901at 66.998 kb on + strand, within Ac3H11_4901at 66.998 kb on + strand, within Ac3H11_4901at 66.999 kb on - strand, within Ac3H11_4901at 66.999 kb on - strand, within Ac3H11_4901at 66.999 kb on - strand, within Ac3H11_4901at 66.999 kb on - strand, within Ac3H11_4901at 66.999 kb on - strand, within Ac3H11_4901at 66.999 kb on - strand, within Ac3H11_4901at 67.026 kb on + strand, within Ac3H11_4901

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH10
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64,997 + +0.6
64,997 + +1.0
64,998 - +2.1
65,364 - Ac3H11_4899 0.36 +0.8
65,774 - Ac3H11_4899 0.88 -2.0
65,774 - Ac3H11_4899 0.88 +0.5
65,774 - Ac3H11_4899 0.88 -1.2
65,774 - Ac3H11_4899 0.88 +0.2
65,853 - -0.2
65,853 - +0.2
65,927 + Ac3H11_4900 0.11 -0.3
65,927 + Ac3H11_4900 0.11 +3.1
65,948 + Ac3H11_4900 0.14 +0.2
65,948 + Ac3H11_4900 0.14 -1.8
65,966 + Ac3H11_4900 0.17 -0.6
65,966 + Ac3H11_4900 0.17 -1.3
65,966 + Ac3H11_4900 0.17 +0.7
65,966 + Ac3H11_4900 0.17 +0.5
65,966 + Ac3H11_4900 0.17 -1.6
65,966 + Ac3H11_4900 0.17 -1.6
65,967 - Ac3H11_4900 0.17 -0.3
65,967 - Ac3H11_4900 0.17 -2.2
65,967 - Ac3H11_4900 0.17 +1.2
65,967 - Ac3H11_4900 0.17 -0.3
65,967 - Ac3H11_4900 0.17 -1.9
65,967 - Ac3H11_4900 0.17 -0.0
66,291 - Ac3H11_4900 0.67 -0.7
66,337 + Ac3H11_4900 0.74 -0.2
66,337 + Ac3H11_4900 0.74 -0.1
66,337 + +1.2
66,337 + Ac3H11_4900 0.74 -0.5
66,337 + Ac3H11_4900 0.74 -0.7
66,337 + Ac3H11_4900 0.74 -1.7
66,337 + Ac3H11_4900 0.74 -0.8
66,338 - Ac3H11_4900 0.74 +0.0
66,338 - Ac3H11_4900 0.74 +3.2
66,338 - Ac3H11_4900 0.74 -1.1
66,338 - Ac3H11_4900 0.74 +0.1
66,341 + Ac3H11_4900 0.74 +0.0
66,342 - Ac3H11_4900 0.75 +1.4
66,406 + Ac3H11_4900 0.84 -0.9
66,406 + Ac3H11_4900 0.84 +0.8
66,515 + +1.9
66,515 + +1.3
66,515 + +1.1
66,515 + +0.1
66,584 + Ac3H11_4901 0.10 -0.8
66,584 + Ac3H11_4901 0.10 -2.9
66,584 + Ac3H11_4901 0.10 +0.1
66,584 + Ac3H11_4901 0.10 +1.0
66,653 + Ac3H11_4901 0.21 +1.4
66,653 + Ac3H11_4901 0.21 +0.5
66,654 - Ac3H11_4901 0.21 -0.6
66,654 - Ac3H11_4901 0.21 +0.9
66,867 - Ac3H11_4901 0.52 +0.2
66,998 + Ac3H11_4901 0.72 +0.1
66,998 + Ac3H11_4901 0.72 +1.0
66,999 - Ac3H11_4901 0.72 +1.5
66,999 - Ac3H11_4901 0.72 +1.7
66,999 - Ac3H11_4901 0.72 +0.0
66,999 - Ac3H11_4901 0.72 +0.6
66,999 - Ac3H11_4901 0.72 +1.0
66,999 - Ac3H11_4901 0.72 +1.6
67,026 + Ac3H11_4901 0.76 +1.2

Or see this region's nucleotide sequence