Experiment: LB, pH10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3881 and Ac3H11_3882 are separated by 139 nucleotides Ac3H11_3882 and Ac3H11_3883 overlap by 4 nucleotides Ac3H11_3883 and Ac3H11_3884 are separated by 26 nucleotides
Ac3H11_3881 - putative exported protein, at 100,654 to 101,691
_3881
Ac3H11_3882 - Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone, at 101,831 to 102,454
_3882
Ac3H11_3883 - Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB, at 102,451 to 103,323
_3883
Ac3H11_3884 - Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA, at 103,350 to 104,534
_3884
Position (kb) 101
102
103 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 101.032 kb on + strand, within Ac3H11_3881 at 101.182 kb on + strand, within Ac3H11_3881 at 101.182 kb on + strand, within Ac3H11_3881 at 101.182 kb on + strand, within Ac3H11_3881 at 101.182 kb on + strand, within Ac3H11_3881 at 101.182 kb on + strand, within Ac3H11_3881 at 101.182 kb on + strand, within Ac3H11_3881 at 101.182 kb on + strand, within Ac3H11_3881 at 101.182 kb on + strand, within Ac3H11_3881 at 101.183 kb on - strand, within Ac3H11_3881 at 101.183 kb on - strand, within Ac3H11_3881 at 101.183 kb on - strand, within Ac3H11_3881 at 101.183 kb on - strand, within Ac3H11_3881 at 101.183 kb on - strand, within Ac3H11_3881 at 101.183 kb on - strand, within Ac3H11_3881 at 101.183 kb on - strand, within Ac3H11_3881 at 101.183 kb on - strand, within Ac3H11_3881 at 101.183 kb on - strand, within Ac3H11_3881 at 101.643 kb on + strand at 101.644 kb on + strand at 101.644 kb on - strand at 101.644 kb on - strand at 101.689 kb on + strand at 101.724 kb on + strand at 101.724 kb on + strand at 101.724 kb on + strand at 101.725 kb on - strand at 101.902 kb on - strand, within Ac3H11_3882 at 101.929 kb on - strand, within Ac3H11_3882 at 101.934 kb on + strand, within Ac3H11_3882 at 101.935 kb on - strand, within Ac3H11_3882 at 101.935 kb on - strand, within Ac3H11_3882 at 101.935 kb on - strand, within Ac3H11_3882
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH10 remove 101,032 + Ac3H11_3881 0.36 -0.2 101,182 + Ac3H11_3881 0.51 -2.0 101,182 + Ac3H11_3881 0.51 +0.9 101,182 + Ac3H11_3881 0.51 -0.1 101,182 + Ac3H11_3881 0.51 +0.1 101,182 + Ac3H11_3881 0.51 -1.0 101,182 + Ac3H11_3881 0.51 -0.6 101,182 + Ac3H11_3881 0.51 -0.3 101,182 + Ac3H11_3881 0.51 -1.0 101,183 - Ac3H11_3881 0.51 +0.3 101,183 - Ac3H11_3881 0.51 +0.6 101,183 - Ac3H11_3881 0.51 +0.3 101,183 - Ac3H11_3881 0.51 -0.4 101,183 - Ac3H11_3881 0.51 -1.0 101,183 - Ac3H11_3881 0.51 +1.3 101,183 - Ac3H11_3881 0.51 +0.1 101,183 - Ac3H11_3881 0.51 -0.9 101,183 - Ac3H11_3881 0.51 -1.2 101,643 + +1.7 101,644 + -0.7 101,644 - -1.4 101,644 - +0.3 101,689 + +0.2 101,724 + -0.4 101,724 + -2.8 101,724 + +1.3 101,725 - -0.0 101,902 - Ac3H11_3882 0.11 -0.9 101,929 - Ac3H11_3882 0.16 +0.2 101,934 + Ac3H11_3882 0.17 -0.7 101,935 - Ac3H11_3882 0.17 +1.8 101,935 - Ac3H11_3882 0.17 +0.8 101,935 - Ac3H11_3882 0.17 +0.8
Or see this region's nucleotide sequence