Experiment: LB, pH10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3495 and Ac3H11_3496 overlap by 4 nucleotides Ac3H11_3496 and Ac3H11_3497 are separated by 8 nucleotides Ac3H11_3497 and Ac3H11_3498 overlap by 4 nucleotides Ac3H11_3498 and Ac3H11_3499 are separated by 71 nucleotides
Ac3H11_3495 - hypothetical protein, at 41,111 to 42,058
_3495
Ac3H11_3496 - Signal recognition particle receptor protein FtsY (=alpha subunit) (TC 3.A.5.1.1), at 42,055 to 42,441
_3496
Ac3H11_3497 - hypothetical protein, at 42,450 to 42,785
_3497
Ac3H11_3498 - hypothetical protein, at 42,782 to 43,237
_3498
Ac3H11_3499 - hypothetical protein, at 43,309 to 44,088
_3499
Position (kb) 42
43 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 41.799 kb on - strand, within Ac3H11_3495 at 41.799 kb on - strand, within Ac3H11_3495 at 41.824 kb on + strand, within Ac3H11_3495 at 41.825 kb on - strand, within Ac3H11_3495 at 41.825 kb on - strand, within Ac3H11_3495 at 41.852 kb on + strand, within Ac3H11_3495 at 41.853 kb on - strand, within Ac3H11_3495 at 41.853 kb on - strand, within Ac3H11_3495 at 41.906 kb on + strand, within Ac3H11_3495 at 41.907 kb on - strand, within Ac3H11_3495 at 41.942 kb on + strand, within Ac3H11_3495 at 41.943 kb on - strand, within Ac3H11_3495 at 41.969 kb on + strand at 41.972 kb on + strand at 41.972 kb on + strand at 42.110 kb on - strand, within Ac3H11_3496 at 42.487 kb on - strand, within Ac3H11_3497 at 42.922 kb on + strand, within Ac3H11_3498 at 42.923 kb on - strand, within Ac3H11_3498 at 43.001 kb on + strand, within Ac3H11_3498 at 43.001 kb on + strand, within Ac3H11_3498 at 43.002 kb on - strand, within Ac3H11_3498 at 43.002 kb on - strand, within Ac3H11_3498 at 43.002 kb on - strand, within Ac3H11_3498 at 43.064 kb on + strand, within Ac3H11_3498 at 43.085 kb on - strand, within Ac3H11_3498 at 43.143 kb on + strand, within Ac3H11_3498 at 43.478 kb on - strand, within Ac3H11_3499 at 43.717 kb on - strand, within Ac3H11_3499 at 43.724 kb on - strand, within Ac3H11_3499 at 43.724 kb on - strand, within Ac3H11_3499
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH10 remove 41,799 - Ac3H11_3495 0.73 -0.7 41,799 - Ac3H11_3495 0.73 +2.1 41,824 + Ac3H11_3495 0.75 +0.1 41,825 - Ac3H11_3495 0.75 +0.8 41,825 - Ac3H11_3495 0.75 -0.8 41,852 + Ac3H11_3495 0.78 -0.4 41,853 - Ac3H11_3495 0.78 +0.8 41,853 - Ac3H11_3495 0.78 +2.8 41,906 + Ac3H11_3495 0.84 +1.4 41,907 - Ac3H11_3495 0.84 +0.3 41,942 + Ac3H11_3495 0.88 +0.3 41,943 - Ac3H11_3495 0.88 -1.3 41,969 + -0.3 41,972 + +0.3 41,972 + +1.1 42,110 - Ac3H11_3496 0.14 -2.6 42,487 - Ac3H11_3497 0.11 +0.6 42,922 + Ac3H11_3498 0.31 +1.4 42,923 - Ac3H11_3498 0.31 +0.6 43,001 + Ac3H11_3498 0.48 +1.0 43,001 + Ac3H11_3498 0.48 +0.2 43,002 - Ac3H11_3498 0.48 -2.0 43,002 - Ac3H11_3498 0.48 +1.8 43,002 - Ac3H11_3498 0.48 -1.5 43,064 + Ac3H11_3498 0.62 -1.6 43,085 - Ac3H11_3498 0.66 -2.1 43,143 + Ac3H11_3498 0.79 +1.9 43,478 - Ac3H11_3499 0.22 -0.9 43,717 - Ac3H11_3499 0.52 -0.1 43,724 - Ac3H11_3499 0.53 -0.5 43,724 - Ac3H11_3499 0.53 +0.4
Or see this region's nucleotide sequence