Experiment: LB, pH10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3466 and Ac3H11_3467 are separated by 3 nucleotides Ac3H11_3467 and Ac3H11_3468 are separated by 23 nucleotides Ac3H11_3468 and Ac3H11_3469 overlap by 4 nucleotides
Ac3H11_3466 - Chromosome (plasmid) partitioning protein ParB, at 18,021 to 20,156
_3466
Ac3H11_3467 - hypothetical protein, at 20,160 to 20,420
_3467
Ac3H11_3468 - COG1896: Predicted hydrolases of HD superfamily, at 20,444 to 21,097
_3468
Ac3H11_3469 - hypothetical protein, at 21,094 to 21,453
_3469
Position (kb) 20
21 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 19.294 kb on + strand, within Ac3H11_3466 at 19.294 kb on + strand, within Ac3H11_3466 at 19.294 kb on + strand, within Ac3H11_3466 at 19.295 kb on - strand, within Ac3H11_3466 at 19.575 kb on + strand, within Ac3H11_3466 at 19.575 kb on + strand, within Ac3H11_3466 at 19.575 kb on + strand, within Ac3H11_3466 at 19.575 kb on + strand, within Ac3H11_3466 at 19.576 kb on - strand, within Ac3H11_3466 at 19.576 kb on - strand, within Ac3H11_3466 at 19.831 kb on + strand, within Ac3H11_3466 at 19.832 kb on - strand, within Ac3H11_3466 at 19.832 kb on - strand, within Ac3H11_3466 at 19.832 kb on - strand, within Ac3H11_3466 at 19.832 kb on - strand, within Ac3H11_3466 at 19.906 kb on - strand, within Ac3H11_3466 at 19.906 kb on - strand, within Ac3H11_3466 at 20.020 kb on + strand at 20.072 kb on - strand at 20.161 kb on + strand at 20.161 kb on + strand at 20.260 kb on + strand, within Ac3H11_3467 at 20.510 kb on + strand, within Ac3H11_3468 at 20.510 kb on + strand, within Ac3H11_3468 at 20.510 kb on + strand, within Ac3H11_3468 at 20.661 kb on + strand, within Ac3H11_3468 at 20.661 kb on + strand, within Ac3H11_3468 at 20.705 kb on + strand, within Ac3H11_3468 at 20.705 kb on + strand, within Ac3H11_3468 at 20.705 kb on + strand, within Ac3H11_3468 at 20.732 kb on + strand, within Ac3H11_3468 at 20.732 kb on + strand, within Ac3H11_3468 at 20.847 kb on + strand, within Ac3H11_3468 at 20.847 kb on + strand, within Ac3H11_3468 at 20.847 kb on + strand, within Ac3H11_3468 at 20.847 kb on + strand, within Ac3H11_3468 at 20.847 kb on + strand, within Ac3H11_3468 at 20.847 kb on + strand, within Ac3H11_3468 at 21.021 kb on + strand, within Ac3H11_3468 at 21.021 kb on + strand, within Ac3H11_3468 at 21.054 kb on + strand at 21.054 kb on + strand at 21.054 kb on + strand at 21.054 kb on + strand at 21.087 kb on + strand at 21.087 kb on + strand at 21.218 kb on + strand, within Ac3H11_3469 at 21.218 kb on + strand, within Ac3H11_3469 at 21.224 kb on + strand, within Ac3H11_3469
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH10 remove 19,294 + Ac3H11_3466 0.60 +0.3 19,294 + Ac3H11_3466 0.60 +0.7 19,294 + Ac3H11_3466 0.60 -1.3 19,295 - Ac3H11_3466 0.60 +1.5 19,575 + Ac3H11_3466 0.73 -2.0 19,575 + Ac3H11_3466 0.73 -3.3 19,575 + Ac3H11_3466 0.73 +2.7 19,575 + Ac3H11_3466 0.73 -0.3 19,576 - Ac3H11_3466 0.73 +1.0 19,576 - Ac3H11_3466 0.73 -0.8 19,831 + Ac3H11_3466 0.85 +2.0 19,832 - Ac3H11_3466 0.85 -0.4 19,832 - Ac3H11_3466 0.85 -1.5 19,832 - Ac3H11_3466 0.85 -0.1 19,832 - Ac3H11_3466 0.85 -1.3 19,906 - Ac3H11_3466 0.88 -0.3 19,906 - Ac3H11_3466 0.88 +0.3 20,020 + +0.1 20,072 - -2.0 20,161 + +0.1 20,161 + +1.0 20,260 + Ac3H11_3467 0.38 +2.6 20,510 + Ac3H11_3468 0.10 -1.8 20,510 + Ac3H11_3468 0.10 +0.7 20,510 + Ac3H11_3468 0.10 -2.2 20,661 + Ac3H11_3468 0.33 -1.9 20,661 + Ac3H11_3468 0.33 +1.9 20,705 + Ac3H11_3468 0.40 -1.6 20,705 + Ac3H11_3468 0.40 -2.7 20,705 + Ac3H11_3468 0.40 +3.2 20,732 + Ac3H11_3468 0.44 +0.5 20,732 + Ac3H11_3468 0.44 -1.0 20,847 + Ac3H11_3468 0.62 -0.0 20,847 + Ac3H11_3468 0.62 -2.1 20,847 + Ac3H11_3468 0.62 -1.0 20,847 + Ac3H11_3468 0.62 -0.7 20,847 + Ac3H11_3468 0.62 +1.3 20,847 + Ac3H11_3468 0.62 -3.2 21,021 + Ac3H11_3468 0.88 -3.0 21,021 + Ac3H11_3468 0.88 -0.0 21,054 + +1.3 21,054 + -0.7 21,054 + -1.3 21,054 + +0.3 21,087 + +0.3 21,087 + +1.0 21,218 + Ac3H11_3469 0.34 +1.2 21,218 + Ac3H11_3469 0.34 +1.8 21,224 + Ac3H11_3469 0.36 +0.1
Or see this region's nucleotide sequence