Experiment: LB, pH10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3462 and Ac3H11_3649 are separated by 50 nucleotides Ac3H11_3649 and Ac3H11_3650 are separated by 209 nucleotides Ac3H11_3650 and Ac3H11_3463 are separated by 62 nucleotides Ac3H11_3463 and Ac3H11_3464 are separated by 768 nucleotides
Ac3H11_3462 - Heat-inducible transcription repressor HrcA, at 13,684 to 14,688
_3462
Ac3H11_3649 - tRNA-Met-CAT, at 14,739 to 14,812
_3649
Ac3H11_3650 - tRNA-Arg-ACG, at 15,022 to 15,095
_3650
Ac3H11_3463 - Phage integrase, at 15,158 to 16,351
_3463
Ac3H11_3464 - hypothetical protein, at 17,120 to 17,512
_3464
Position (kb) 15
16
17 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 14.164 kb on + strand, within Ac3H11_3462 at 14.164 kb on + strand, within Ac3H11_3462 at 14.182 kb on - strand, within Ac3H11_3462 at 14.213 kb on - strand, within Ac3H11_3462 at 14.325 kb on - strand, within Ac3H11_3462 at 14.325 kb on - strand, within Ac3H11_3462 at 14.325 kb on - strand, within Ac3H11_3462 at 14.450 kb on + strand, within Ac3H11_3462 at 14.450 kb on + strand, within Ac3H11_3462 at 14.467 kb on - strand, within Ac3H11_3462 at 14.467 kb on - strand, within Ac3H11_3462 at 14.497 kb on + strand, within Ac3H11_3462 at 14.497 kb on + strand, within Ac3H11_3462 at 14.497 kb on + strand, within Ac3H11_3462 at 14.497 kb on + strand, within Ac3H11_3462 at 14.497 kb on + strand, within Ac3H11_3462 at 14.497 kb on + strand, within Ac3H11_3462 at 14.498 kb on - strand, within Ac3H11_3462 at 14.498 kb on - strand, within Ac3H11_3462 at 14.498 kb on - strand, within Ac3H11_3462 at 14.498 kb on - strand, within Ac3H11_3462 at 14.686 kb on + strand at 14.686 kb on + strand at 14.686 kb on + strand at 14.686 kb on + strand at 14.686 kb on + strand at 14.686 kb on + strand at 14.686 kb on + strand at 14.686 kb on + strand at 14.694 kb on + strand at 14.694 kb on + strand at 14.694 kb on + strand at 14.694 kb on + strand at 14.699 kb on + strand at 14.718 kb on + strand at 14.718 kb on + strand at 14.718 kb on + strand at 14.718 kb on + strand at 14.718 kb on + strand at 14.718 kb on + strand at 14.718 kb on + strand at 14.718 kb on + strand at 14.718 kb on + strand at 14.718 kb on + strand at 14.718 kb on + strand at 14.718 kb on + strand at 14.718 kb on + strand at 14.718 kb on + strand at 14.718 kb on + strand at 14.718 kb on + strand at 14.718 kb on + strand at 14.718 kb on + strand at 14.720 kb on + strand at 14.720 kb on + strand at 14.720 kb on + strand at 14.720 kb on + strand at 14.904 kb on + strand at 14.904 kb on + strand at 14.904 kb on + strand at 14.904 kb on + strand at 14.927 kb on + strand at 14.968 kb on + strand at 15.327 kb on + strand, within Ac3H11_3463 at 15.327 kb on + strand, within Ac3H11_3463 at 15.327 kb on + strand, within Ac3H11_3463 at 15.327 kb on + strand, within Ac3H11_3463 at 15.328 kb on - strand, within Ac3H11_3463 at 15.328 kb on - strand, within Ac3H11_3463 at 15.328 kb on - strand, within Ac3H11_3463 at 15.364 kb on + strand, within Ac3H11_3463 at 15.365 kb on - strand, within Ac3H11_3463 at 15.510 kb on + strand, within Ac3H11_3463 at 15.510 kb on + strand, within Ac3H11_3463 at 15.510 kb on + strand, within Ac3H11_3463 at 15.510 kb on + strand, within Ac3H11_3463 at 15.511 kb on - strand, within Ac3H11_3463 at 15.570 kb on + strand, within Ac3H11_3463 at 15.570 kb on + strand, within Ac3H11_3463 at 15.570 kb on + strand, within Ac3H11_3463 at 15.570 kb on + strand, within Ac3H11_3463 at 15.570 kb on + strand, within Ac3H11_3463 at 15.570 kb on + strand, within Ac3H11_3463 at 15.570 kb on + strand, within Ac3H11_3463 at 15.570 kb on + strand, within Ac3H11_3463 at 15.570 kb on + strand, within Ac3H11_3463 at 15.570 kb on + strand, within Ac3H11_3463 at 15.570 kb on + strand, within Ac3H11_3463 at 15.570 kb on + strand, within Ac3H11_3463 at 15.571 kb on - strand, within Ac3H11_3463 at 15.571 kb on - strand, within Ac3H11_3463 at 15.571 kb on - strand, within Ac3H11_3463 at 15.571 kb on - strand, within Ac3H11_3463 at 15.571 kb on - strand, within Ac3H11_3463 at 15.571 kb on - strand, within Ac3H11_3463 at 15.571 kb on - strand, within Ac3H11_3463 at 15.571 kb on - strand, within Ac3H11_3463 at 15.571 kb on - strand, within Ac3H11_3463 at 15.571 kb on - strand, within Ac3H11_3463 at 15.571 kb on - strand, within Ac3H11_3463 at 15.571 kb on - strand, within Ac3H11_3463 at 15.571 kb on - strand, within Ac3H11_3463 at 15.959 kb on + strand, within Ac3H11_3463 at 15.959 kb on + strand, within Ac3H11_3463 at 15.959 kb on + strand, within Ac3H11_3463 at 15.959 kb on + strand, within Ac3H11_3463 at 15.960 kb on - strand, within Ac3H11_3463 at 15.960 kb on - strand, within Ac3H11_3463 at 15.960 kb on - strand, within Ac3H11_3463 at 16.020 kb on + strand, within Ac3H11_3463 at 16.021 kb on - strand, within Ac3H11_3463 at 16.021 kb on - strand, within Ac3H11_3463 at 16.140 kb on + strand, within Ac3H11_3463 at 16.140 kb on + strand, within Ac3H11_3463 at 16.140 kb on + strand, within Ac3H11_3463 at 16.140 kb on + strand, within Ac3H11_3463 at 16.230 kb on - strand, within Ac3H11_3463 at 16.245 kb on + strand at 16.245 kb on + strand at 16.245 kb on + strand at 16.245 kb on + strand at 16.245 kb on + strand at 16.246 kb on - strand at 16.246 kb on - strand at 16.249 kb on + strand at 16.249 kb on + strand at 16.249 kb on + strand at 16.249 kb on + strand at 16.249 kb on + strand at 16.249 kb on + strand at 16.249 kb on + strand at 16.250 kb on - strand at 16.250 kb on - strand at 16.250 kb on - strand at 16.250 kb on - strand at 16.250 kb on - strand at 16.250 kb on - strand at 16.250 kb on - strand at 16.250 kb on - strand at 16.250 kb on - strand at 16.250 kb on - strand at 16.326 kb on + strand at 16.326 kb on + strand at 16.327 kb on - strand at 16.327 kb on - strand at 16.327 kb on - strand at 16.327 kb on - strand at 16.330 kb on + strand at 16.330 kb on + strand at 16.330 kb on + strand at 16.496 kb on + strand at 16.496 kb on + strand at 16.496 kb on + strand at 16.496 kb on + strand at 16.496 kb on + strand at 16.496 kb on + strand at 16.568 kb on + strand at 16.568 kb on - strand at 16.577 kb on + strand at 16.747 kb on + strand at 16.747 kb on + strand at 16.747 kb on + strand at 16.747 kb on + strand at 16.747 kb on + strand at 16.747 kb on + strand at 16.747 kb on + strand at 16.747 kb on + strand at 16.747 kb on + strand at 16.748 kb on - strand at 16.748 kb on - strand at 16.748 kb on - strand at 16.748 kb on - strand at 16.818 kb on + strand at 16.819 kb on - strand at 16.819 kb on - strand at 16.826 kb on + strand at 17.057 kb on + strand at 17.058 kb on - strand at 17.058 kb on - strand at 17.194 kb on + strand, within Ac3H11_3464 at 17.194 kb on + strand, within Ac3H11_3464
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH10 remove 14,164 + Ac3H11_3462 0.48 +0.9 14,164 + Ac3H11_3462 0.48 +2.4 14,182 - Ac3H11_3462 0.50 +0.1 14,213 - Ac3H11_3462 0.53 +0.5 14,325 - Ac3H11_3462 0.64 -0.8 14,325 - Ac3H11_3462 0.64 +0.9 14,325 - Ac3H11_3462 0.64 -0.4 14,450 + Ac3H11_3462 0.76 +2.9 14,450 + Ac3H11_3462 0.76 +3.1 14,467 - Ac3H11_3462 0.78 +2.8 14,467 - Ac3H11_3462 0.78 +0.7 14,497 + Ac3H11_3462 0.81 +1.0 14,497 + Ac3H11_3462 0.81 +2.0 14,497 + Ac3H11_3462 0.81 +0.1 14,497 + Ac3H11_3462 0.81 -1.3 14,497 + Ac3H11_3462 0.81 +0.4 14,497 + Ac3H11_3462 0.81 -1.0 14,498 - Ac3H11_3462 0.81 +2.7 14,498 - Ac3H11_3462 0.81 +0.1 14,498 - Ac3H11_3462 0.81 -1.4 14,498 - Ac3H11_3462 0.81 -0.1 14,686 + -0.2 14,686 + +0.6 14,686 + +0.8 14,686 + -0.5 14,686 + +2.5 14,686 + -1.5 14,686 + -1.1 14,686 + +0.6 14,694 + +1.0 14,694 + +1.1 14,694 + +1.4 14,694 + +0.7 14,699 + -0.9 14,718 + -2.3 14,718 + +0.7 14,718 + -0.4 14,718 + -0.7 14,718 + +1.3 14,718 + +0.5 14,718 + +0.6 14,718 + +0.6 14,718 + -0.1 14,718 + +0.7 14,718 + -0.4 14,718 + -0.5 14,718 + -0.9 14,718 + +1.2 14,718 + -1.7 14,718 + -1.2 14,718 + -1.0 14,718 + +1.8 14,720 + -0.4 14,720 + +0.1 14,720 + -1.9 14,720 + -0.5 14,904 + +1.1 14,904 + -1.2 14,904 + +0.2 14,904 + -1.0 14,927 + -0.4 14,968 + -0.1 15,327 + Ac3H11_3463 0.14 -1.0 15,327 + Ac3H11_3463 0.14 -2.4 15,327 + Ac3H11_3463 0.14 +1.1 15,327 + Ac3H11_3463 0.14 -3.8 15,328 - Ac3H11_3463 0.14 -0.6 15,328 - Ac3H11_3463 0.14 -1.3 15,328 - Ac3H11_3463 0.14 -2.0 15,364 + Ac3H11_3463 0.17 -3.4 15,365 - Ac3H11_3463 0.17 +0.8 15,510 + Ac3H11_3463 0.29 +1.4 15,510 + Ac3H11_3463 0.29 -4.3 15,510 + Ac3H11_3463 0.29 -1.0 15,510 + Ac3H11_3463 0.29 -0.3 15,511 - Ac3H11_3463 0.30 -1.6 15,570 + Ac3H11_3463 0.35 +0.0 15,570 + Ac3H11_3463 0.35 -0.5 15,570 + Ac3H11_3463 0.35 -1.1 15,570 + Ac3H11_3463 0.35 -1.5 15,570 + Ac3H11_3463 0.35 -0.1 15,570 + Ac3H11_3463 0.35 -3.0 15,570 + Ac3H11_3463 0.35 -3.5 15,570 + Ac3H11_3463 0.35 -1.6 15,570 + Ac3H11_3463 0.35 +0.1 15,570 + Ac3H11_3463 0.35 -2.3 15,570 + Ac3H11_3463 0.35 -0.3 15,570 + Ac3H11_3463 0.35 +0.9 15,571 - Ac3H11_3463 0.35 +2.1 15,571 - Ac3H11_3463 0.35 +0.6 15,571 - Ac3H11_3463 0.35 -0.8 15,571 - Ac3H11_3463 0.35 +1.6 15,571 - Ac3H11_3463 0.35 -1.2 15,571 - Ac3H11_3463 0.35 -0.5 15,571 - Ac3H11_3463 0.35 -2.6 15,571 - Ac3H11_3463 0.35 +0.6 15,571 - Ac3H11_3463 0.35 -2.1 15,571 - Ac3H11_3463 0.35 -1.8 15,571 - Ac3H11_3463 0.35 -2.5 15,571 - Ac3H11_3463 0.35 -0.0 15,571 - Ac3H11_3463 0.35 +0.2 15,959 + Ac3H11_3463 0.67 -0.3 15,959 + Ac3H11_3463 0.67 -1.5 15,959 + Ac3H11_3463 0.67 -1.8 15,959 + Ac3H11_3463 0.67 +0.6 15,960 - Ac3H11_3463 0.67 -1.6 15,960 - Ac3H11_3463 0.67 -0.8 15,960 - Ac3H11_3463 0.67 -0.4 16,020 + Ac3H11_3463 0.72 -0.7 16,021 - Ac3H11_3463 0.72 -2.1 16,021 - Ac3H11_3463 0.72 -2.1 16,140 + Ac3H11_3463 0.82 +0.0 16,140 + Ac3H11_3463 0.82 +0.9 16,140 + Ac3H11_3463 0.82 -0.0 16,140 + Ac3H11_3463 0.82 -1.3 16,230 - Ac3H11_3463 0.90 +1.5 16,245 + -0.9 16,245 + +1.7 16,245 + -3.5 16,245 + +3.3 16,245 + -1.8 16,246 - +1.3 16,246 - -1.9 16,249 + -1.6 16,249 + -0.2 16,249 + +1.3 16,249 + +0.7 16,249 + -3.0 16,249 + +0.2 16,249 + +0.5 16,250 - +0.5 16,250 - -0.9 16,250 - +0.1 16,250 - -0.6 16,250 - +0.4 16,250 - +1.5 16,250 - -1.1 16,250 - -2.5 16,250 - -2.0 16,250 - -2.3 16,326 + -1.8 16,326 + +0.9 16,327 - -1.6 16,327 - -1.0 16,327 - -3.0 16,327 - +0.6 16,330 + -1.8 16,330 + -0.3 16,330 + -2.3 16,496 + -0.6 16,496 + +2.1 16,496 + +1.5 16,496 + -0.4 16,496 + -1.5 16,496 + -2.1 16,568 + -1.5 16,568 - -1.0 16,577 + -2.3 16,747 + -1.2 16,747 + -1.3 16,747 + +0.0 16,747 + -0.0 16,747 + +2.7 16,747 + +1.5 16,747 + +1.3 16,747 + +1.6 16,747 + -1.6 16,748 - -1.1 16,748 - -2.0 16,748 - -0.6 16,748 - -1.0 16,818 + -1.0 16,819 - -1.2 16,819 - +0.1 16,826 + +1.0 17,057 + -0.9 17,058 - +0.8 17,058 - -0.1 17,194 + Ac3H11_3464 0.19 -1.5 17,194 + Ac3H11_3464 0.19 -0.1
Or see this region's nucleotide sequence