Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3400

Experiment: LB, pH10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3398 and Ac3H11_3399 are separated by 48 nucleotidesAc3H11_3399 and Ac3H11_3400 are separated by 32 nucleotidesAc3H11_3400 and Ac3H11_3401 are separated by 275 nucleotides Ac3H11_3398 - Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF, at 75,151 to 76,404 _3398 Ac3H11_3399 - Probable transmembrane protein, at 76,453 to 77,250 _3399 Ac3H11_3400 - Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE, at 77,283 to 78,410 _3400 Ac3H11_3401 - Ammonium transporter, at 78,686 to 80,224 _3401 Position (kb) 77 78 79Strain fitness (log2 ratio) -2 -1 0 1 2 3at 76.292 kb on + strandat 76.293 kb on - strandat 76.293 kb on - strandat 76.293 kb on - strandat 76.293 kb on - strandat 77.044 kb on + strand, within Ac3H11_3399at 77.044 kb on + strand, within Ac3H11_3399at 77.044 kb on + strand, within Ac3H11_3399at 77.045 kb on - strand, within Ac3H11_3399at 77.045 kb on - strand, within Ac3H11_3399at 77.045 kb on - strand, within Ac3H11_3399at 77.045 kb on - strand, within Ac3H11_3399at 77.045 kb on - strand, within Ac3H11_3399at 77.126 kb on + strand, within Ac3H11_3399at 77.126 kb on + strand, within Ac3H11_3399at 77.126 kb on + strand, within Ac3H11_3399at 77.126 kb on + strand, within Ac3H11_3399at 77.126 kb on + strand, within Ac3H11_3399at 77.127 kb on - strand, within Ac3H11_3399at 77.127 kb on - strand, within Ac3H11_3399at 77.127 kb on - strand, within Ac3H11_3399at 77.127 kb on - strand, within Ac3H11_3399at 77.127 kb on - strand, within Ac3H11_3399at 77.284 kb on + strandat 77.284 kb on + strandat 77.424 kb on + strand, within Ac3H11_3400at 77.722 kb on - strand, within Ac3H11_3400at 77.722 kb on - strand, within Ac3H11_3400at 77.752 kb on + strand, within Ac3H11_3400at 77.752 kb on + strand, within Ac3H11_3400at 77.752 kb on + strand, within Ac3H11_3400at 77.752 kb on + strand, within Ac3H11_3400at 77.752 kb on + strand, within Ac3H11_3400at 77.752 kb on + strand, within Ac3H11_3400at 77.752 kb on + strand, within Ac3H11_3400at 77.752 kb on + strand, within Ac3H11_3400at 77.752 kb on + strand, within Ac3H11_3400at 77.753 kb on - strand, within Ac3H11_3400at 77.753 kb on - strand, within Ac3H11_3400at 77.753 kb on - strand, within Ac3H11_3400at 77.753 kb on - strand, within Ac3H11_3400at 78.049 kb on + strand, within Ac3H11_3400at 78.049 kb on + strand, within Ac3H11_3400at 78.253 kb on + strand, within Ac3H11_3400at 78.253 kb on + strand, within Ac3H11_3400at 78.254 kb on - strand, within Ac3H11_3400at 78.421 kb on + strandat 78.611 kb on + strandat 78.632 kb on + strandat 78.696 kb on + strandat 78.786 kb on + strandat 78.787 kb on - strandat 78.787 kb on - strandat 78.787 kb on - strandat 78.870 kb on + strand, within Ac3H11_3401at 78.915 kb on + strand, within Ac3H11_3401at 78.916 kb on - strand, within Ac3H11_3401

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH10
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76,292 + -0.0
76,293 - +1.4
76,293 - +1.5
76,293 - -0.0
76,293 - +1.2
77,044 + Ac3H11_3399 0.74 +0.1
77,044 + Ac3H11_3399 0.74 +0.4
77,044 + Ac3H11_3399 0.74 +1.8
77,045 - Ac3H11_3399 0.74 +3.2
77,045 - Ac3H11_3399 0.74 -0.6
77,045 - Ac3H11_3399 0.74 +0.9
77,045 - Ac3H11_3399 0.74 +0.9
77,045 - Ac3H11_3399 0.74 +0.8
77,126 + Ac3H11_3399 0.84 +2.2
77,126 + Ac3H11_3399 0.84 -1.1
77,126 + Ac3H11_3399 0.84 -1.0
77,126 + Ac3H11_3399 0.84 +0.9
77,126 + Ac3H11_3399 0.84 +0.4
77,127 - Ac3H11_3399 0.84 +0.5
77,127 - Ac3H11_3399 0.84 +1.1
77,127 - Ac3H11_3399 0.84 +1.7
77,127 - Ac3H11_3399 0.84 -0.3
77,127 - Ac3H11_3399 0.84 -0.3
77,284 + +0.7
77,284 + -0.8
77,424 + Ac3H11_3400 0.12 -1.1
77,722 - Ac3H11_3400 0.39 -0.1
77,722 - Ac3H11_3400 0.39 +0.1
77,752 + Ac3H11_3400 0.42 +0.6
77,752 + Ac3H11_3400 0.42 +0.7
77,752 + Ac3H11_3400 0.42 +0.7
77,752 + Ac3H11_3400 0.42 -0.3
77,752 + Ac3H11_3400 0.42 -0.3
77,752 + Ac3H11_3400 0.42 -0.5
77,752 + Ac3H11_3400 0.42 -0.7
77,752 + Ac3H11_3400 0.42 -1.0
77,752 + Ac3H11_3400 0.42 -1.5
77,753 - Ac3H11_3400 0.42 +0.0
77,753 - Ac3H11_3400 0.42 +1.9
77,753 - Ac3H11_3400 0.42 -2.0
77,753 - Ac3H11_3400 0.42 +0.3
78,049 + Ac3H11_3400 0.68 -0.7
78,049 + Ac3H11_3400 0.68 +0.4
78,253 + Ac3H11_3400 0.86 +0.5
78,253 + Ac3H11_3400 0.86 -1.0
78,254 - Ac3H11_3400 0.86 +1.5
78,421 + +1.1
78,611 + +0.4
78,632 + -0.3
78,696 + -2.1
78,786 + +1.6
78,787 - -0.1
78,787 - +1.7
78,787 - -0.5
78,870 + Ac3H11_3401 0.12 -1.4
78,915 + Ac3H11_3401 0.15 +0.5
78,916 - Ac3H11_3401 0.15 -0.8

Or see this region's nucleotide sequence