Experiment: LB, pH10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3119 and Ac3H11_3120 are separated by 21 nucleotides Ac3H11_3120 and Ac3H11_3121 overlap by 14 nucleotides Ac3H11_3121 and Ac3H11_3122 are separated by 140 nucleotides
Ac3H11_3119 - OmpA/MotB, at 21,471 to 22,493
_3119
Ac3H11_3120 - hypothetical protein, at 22,515 to 22,745
_3120
Ac3H11_3121 - hypothetical protein, at 22,732 to 22,875
_3121
Ac3H11_3122 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 23,016 to 25,301
_3122
Position (kb)
22
23 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 21.793 kb on + strand, within Ac3H11_3119 at 21.793 kb on + strand, within Ac3H11_3119 at 21.793 kb on + strand, within Ac3H11_3119 at 21.794 kb on - strand, within Ac3H11_3119 at 21.901 kb on + strand, within Ac3H11_3119 at 21.902 kb on - strand, within Ac3H11_3119 at 21.902 kb on - strand, within Ac3H11_3119 at 21.902 kb on - strand, within Ac3H11_3119 at 21.922 kb on + strand, within Ac3H11_3119 at 21.922 kb on + strand, within Ac3H11_3119 at 21.922 kb on + strand, within Ac3H11_3119 at 21.923 kb on - strand, within Ac3H11_3119 at 21.923 kb on - strand, within Ac3H11_3119 at 21.923 kb on - strand, within Ac3H11_3119 at 21.923 kb on - strand, within Ac3H11_3119 at 21.923 kb on - strand, within Ac3H11_3119 at 21.923 kb on - strand, within Ac3H11_3119 at 22.021 kb on + strand, within Ac3H11_3119 at 22.021 kb on + strand, within Ac3H11_3119 at 22.021 kb on + strand, within Ac3H11_3119 at 22.021 kb on + strand, within Ac3H11_3119 at 22.021 kb on + strand, within Ac3H11_3119 at 22.022 kb on - strand, within Ac3H11_3119 at 22.022 kb on - strand, within Ac3H11_3119 at 22.030 kb on + strand, within Ac3H11_3119 at 22.031 kb on - strand, within Ac3H11_3119 at 22.096 kb on + strand, within Ac3H11_3119 at 22.096 kb on + strand, within Ac3H11_3119 at 22.096 kb on + strand, within Ac3H11_3119 at 22.097 kb on - strand, within Ac3H11_3119 at 22.097 kb on - strand, within Ac3H11_3119 at 22.097 kb on - strand, within Ac3H11_3119 at 22.097 kb on - strand, within Ac3H11_3119 at 22.130 kb on - strand, within Ac3H11_3119 at 22.169 kb on - strand, within Ac3H11_3119 at 22.214 kb on - strand, within Ac3H11_3119 at 22.261 kb on + strand, within Ac3H11_3119 at 22.261 kb on + strand, within Ac3H11_3119 at 22.261 kb on + strand, within Ac3H11_3119 at 22.261 kb on + strand, within Ac3H11_3119 at 22.261 kb on + strand, within Ac3H11_3119 at 22.261 kb on + strand, within Ac3H11_3119 at 22.262 kb on - strand, within Ac3H11_3119 at 22.262 kb on - strand, within Ac3H11_3119 at 22.262 kb on - strand, within Ac3H11_3119 at 22.343 kb on - strand, within Ac3H11_3119 at 22.541 kb on + strand, within Ac3H11_3120 at 22.541 kb on + strand, within Ac3H11_3120 at 22.541 kb on + strand, within Ac3H11_3120 at 22.542 kb on - strand, within Ac3H11_3120 at 22.687 kb on + strand, within Ac3H11_3120 at 22.688 kb on - strand, within Ac3H11_3120 at 22.873 kb on + strand at 22.873 kb on + strand at 22.873 kb on + strand at 22.874 kb on - strand at 23.086 kb on + strand at 23.087 kb on - strand at 23.087 kb on - strand at 23.095 kb on + strand at 23.293 kb on + strand, within Ac3H11_3122 at 23.308 kb on + strand, within Ac3H11_3122 at 23.308 kb on + strand, within Ac3H11_3122 at 23.308 kb on + strand, within Ac3H11_3122 at 23.309 kb on - strand, within Ac3H11_3122 at 23.309 kb on - strand, within Ac3H11_3122 at 23.309 kb on - strand, within Ac3H11_3122 at 23.309 kb on - strand, within Ac3H11_3122 at 23.625 kb on - strand, within Ac3H11_3122 at 23.625 kb on - strand, within Ac3H11_3122 at 23.709 kb on + strand, within Ac3H11_3122 at 23.709 kb on + strand, within Ac3H11_3122 at 23.710 kb on - strand, within Ac3H11_3122 at 23.710 kb on - strand, within Ac3H11_3122 at 23.710 kb on - strand, within Ac3H11_3122 at 23.710 kb on - strand, within Ac3H11_3122
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH10 remove 21,793 + Ac3H11_3119 0.31 -0.8 21,793 + Ac3H11_3119 0.31 -0.4 21,793 + Ac3H11_3119 0.31 +0.4 21,794 - Ac3H11_3119 0.32 +3.3 21,901 + Ac3H11_3119 0.42 -1.4 21,902 - Ac3H11_3119 0.42 -1.6 21,902 - Ac3H11_3119 0.42 -0.0 21,902 - Ac3H11_3119 0.42 +1.1 21,922 + Ac3H11_3119 0.44 -2.1 21,922 + Ac3H11_3119 0.44 -0.1 21,922 + Ac3H11_3119 0.44 +0.6 21,923 - Ac3H11_3119 0.44 +0.7 21,923 - Ac3H11_3119 0.44 +0.1 21,923 - Ac3H11_3119 0.44 +0.6 21,923 - Ac3H11_3119 0.44 +0.5 21,923 - Ac3H11_3119 0.44 -2.5 21,923 - Ac3H11_3119 0.44 +1.7 22,021 + Ac3H11_3119 0.54 -0.2 22,021 + Ac3H11_3119 0.54 -0.4 22,021 + Ac3H11_3119 0.54 -1.1 22,021 + Ac3H11_3119 0.54 +0.1 22,021 + Ac3H11_3119 0.54 -0.6 22,022 - Ac3H11_3119 0.54 +0.4 22,022 - Ac3H11_3119 0.54 +1.2 22,030 + Ac3H11_3119 0.55 -1.8 22,031 - Ac3H11_3119 0.55 -1.4 22,096 + Ac3H11_3119 0.61 +1.2 22,096 + Ac3H11_3119 0.61 +1.8 22,096 + Ac3H11_3119 0.61 +1.1 22,097 - Ac3H11_3119 0.61 -1.1 22,097 - Ac3H11_3119 0.61 +1.2 22,097 - Ac3H11_3119 0.61 +1.5 22,097 - Ac3H11_3119 0.61 +2.1 22,130 - Ac3H11_3119 0.64 -0.4 22,169 - Ac3H11_3119 0.68 +1.3 22,214 - Ac3H11_3119 0.73 -0.8 22,261 + Ac3H11_3119 0.77 -2.9 22,261 + Ac3H11_3119 0.77 +2.2 22,261 + Ac3H11_3119 0.77 +0.2 22,261 + Ac3H11_3119 0.77 -0.5 22,261 + Ac3H11_3119 0.77 +0.2 22,261 + Ac3H11_3119 0.77 -0.3 22,262 - Ac3H11_3119 0.77 +1.0 22,262 - Ac3H11_3119 0.77 +1.2 22,262 - Ac3H11_3119 0.77 -1.0 22,343 - Ac3H11_3119 0.85 +0.6 22,541 + Ac3H11_3120 0.11 +0.4 22,541 + Ac3H11_3120 0.11 -1.1 22,541 + Ac3H11_3120 0.11 +2.5 22,542 - Ac3H11_3120 0.12 -0.7 22,687 + Ac3H11_3120 0.74 +1.5 22,688 - Ac3H11_3120 0.75 +1.1 22,873 + +0.2 22,873 + +0.9 22,873 + -1.6 22,874 - -0.1 23,086 + -1.1 23,087 - -2.0 23,087 - -0.5 23,095 + -2.7 23,293 + Ac3H11_3122 0.12 -0.8 23,308 + Ac3H11_3122 0.13 -0.0 23,308 + Ac3H11_3122 0.13 +1.1 23,308 + Ac3H11_3122 0.13 -0.3 23,309 - Ac3H11_3122 0.13 -0.7 23,309 - Ac3H11_3122 0.13 +1.6 23,309 - Ac3H11_3122 0.13 -0.9 23,309 - Ac3H11_3122 0.13 -0.6 23,625 - Ac3H11_3122 0.27 +0.1 23,625 - Ac3H11_3122 0.27 +1.1 23,709 + Ac3H11_3122 0.30 +0.6 23,709 + Ac3H11_3122 0.30 +3.3 23,710 - Ac3H11_3122 0.30 -0.8 23,710 - Ac3H11_3122 0.30 +1.3 23,710 - Ac3H11_3122 0.30 +1.5 23,710 - Ac3H11_3122 0.30 -2.1
Or see this region's nucleotide sequence