Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2615

Experiment: LB, pH10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2614 and Ac3H11_2615 are separated by 183 nucleotidesAc3H11_2615 and Ac3H11_2616 are separated by 30 nucleotides Ac3H11_2614 - FIG01200701: possible membrane protein, at 897,154 to 897,804 _2614 Ac3H11_2615 - FIG074102: hypothetical protein, at 897,988 to 898,305 _2615 Ac3H11_2616 - Argininosuccinate synthase (EC 6.3.4.5), at 898,336 to 899,673 _2616 Position (kb) 897 898 899Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 896.998 kb on - strandat 896.998 kb on - strandat 897.066 kb on + strandat 897.066 kb on + strandat 897.066 kb on + strandat 897.126 kb on + strandat 897.126 kb on + strandat 897.126 kb on + strandat 897.127 kb on - strandat 897.127 kb on - strandat 897.127 kb on - strandat 897.130 kb on + strandat 897.130 kb on + strandat 897.131 kb on - strandat 897.131 kb on - strandat 897.131 kb on - strandat 897.295 kb on + strand, within Ac3H11_2614at 897.295 kb on + strand, within Ac3H11_2614at 897.295 kb on + strand, within Ac3H11_2614at 897.461 kb on - strand, within Ac3H11_2614at 897.461 kb on - strand, within Ac3H11_2614at 897.493 kb on + strand, within Ac3H11_2614at 897.494 kb on - strand, within Ac3H11_2614at 897.494 kb on - strand, within Ac3H11_2614at 897.494 kb on - strand, within Ac3H11_2614at 897.496 kb on + strand, within Ac3H11_2614at 897.496 kb on + strand, within Ac3H11_2614at 897.496 kb on + strand, within Ac3H11_2614at 897.497 kb on - strand, within Ac3H11_2614at 897.497 kb on - strand, within Ac3H11_2614at 897.497 kb on - strand, within Ac3H11_2614at 897.497 kb on - strand, within Ac3H11_2614at 897.497 kb on - strand, within Ac3H11_2614at 897.507 kb on + strand, within Ac3H11_2614at 897.507 kb on + strand, within Ac3H11_2614at 897.507 kb on + strand, within Ac3H11_2614at 897.512 kb on + strand, within Ac3H11_2614at 897.512 kb on + strand, within Ac3H11_2614at 897.512 kb on + strand, within Ac3H11_2614at 897.512 kb on + strand, within Ac3H11_2614at 897.512 kb on + strand, within Ac3H11_2614at 897.513 kb on - strand, within Ac3H11_2614at 897.513 kb on - strand, within Ac3H11_2614at 897.513 kb on - strand, within Ac3H11_2614at 897.517 kb on + strand, within Ac3H11_2614at 897.517 kb on + strand, within Ac3H11_2614at 897.517 kb on + strand, within Ac3H11_2614at 897.517 kb on + strand, within Ac3H11_2614at 897.517 kb on + strand, within Ac3H11_2614at 897.518 kb on - strand, within Ac3H11_2614at 897.518 kb on - strand, within Ac3H11_2614at 897.529 kb on + strand, within Ac3H11_2614at 897.529 kb on + strand, within Ac3H11_2614at 897.529 kb on + strand, within Ac3H11_2614at 897.530 kb on - strand, within Ac3H11_2614at 897.530 kb on - strand, within Ac3H11_2614at 897.530 kb on - strand, within Ac3H11_2614at 897.535 kb on + strand, within Ac3H11_2614at 897.536 kb on - strand, within Ac3H11_2614at 897.550 kb on + strand, within Ac3H11_2614at 897.550 kb on + strand, within Ac3H11_2614at 897.551 kb on - strand, within Ac3H11_2614at 897.551 kb on - strand, within Ac3H11_2614at 897.551 kb on - strand, within Ac3H11_2614at 897.551 kb on - strand, within Ac3H11_2614at 897.551 kb on - strand, within Ac3H11_2614at 897.551 kb on - strand, within Ac3H11_2614at 897.551 kb on - strand, within Ac3H11_2614at 897.551 kb on - strand, within Ac3H11_2614at 897.619 kb on + strand, within Ac3H11_2614at 897.619 kb on + strand, within Ac3H11_2614at 897.619 kb on + strand, within Ac3H11_2614at 897.619 kb on + strand, within Ac3H11_2614at 897.619 kb on + strand, within Ac3H11_2614at 897.619 kb on + strand, within Ac3H11_2614at 897.619 kb on + strand, within Ac3H11_2614at 897.619 kb on + strand, within Ac3H11_2614at 897.620 kb on - strand, within Ac3H11_2614at 897.620 kb on - strand, within Ac3H11_2614at 897.620 kb on - strand, within Ac3H11_2614at 897.620 kb on - strand, within Ac3H11_2614at 897.620 kb on - strand, within Ac3H11_2614at 897.640 kb on + strand, within Ac3H11_2614at 897.640 kb on + strand, within Ac3H11_2614at 897.641 kb on - strand, within Ac3H11_2614at 897.658 kb on + strand, within Ac3H11_2614at 897.659 kb on - strand, within Ac3H11_2614at 897.689 kb on - strand, within Ac3H11_2614at 897.706 kb on + strand, within Ac3H11_2614at 897.707 kb on - strand, within Ac3H11_2614at 897.707 kb on - strand, within Ac3H11_2614at 897.707 kb on - strand, within Ac3H11_2614at 897.707 kb on - strand, within Ac3H11_2614at 897.721 kb on + strand, within Ac3H11_2614at 897.721 kb on + strand, within Ac3H11_2614at 897.721 kb on + strand, within Ac3H11_2614at 897.721 kb on + strand, within Ac3H11_2614at 897.721 kb on + strand, within Ac3H11_2614at 897.721 kb on + strand, within Ac3H11_2614at 897.721 kb on + strand, within Ac3H11_2614at 897.721 kb on + strand, within Ac3H11_2614at 897.721 kb on + strand, within Ac3H11_2614at 897.721 kb on + strand, within Ac3H11_2614at 897.722 kb on - strand, within Ac3H11_2614at 897.722 kb on - strand, within Ac3H11_2614at 897.722 kb on - strand, within Ac3H11_2614at 897.722 kb on - strand, within Ac3H11_2614at 897.722 kb on - strand, within Ac3H11_2614at 897.722 kb on - strand, within Ac3H11_2614at 897.722 kb on - strand, within Ac3H11_2614at 897.722 kb on - strand, within Ac3H11_2614at 897.722 kb on - strand, within Ac3H11_2614at 897.722 kb on - strand, within Ac3H11_2614at 897.722 kb on - strand, within Ac3H11_2614at 897.722 kb on - strand, within Ac3H11_2614at 897.722 kb on - strand, within Ac3H11_2614at 897.751 kb on + strandat 897.751 kb on + strandat 897.757 kb on + strandat 897.758 kb on - strandat 897.772 kb on + strandat 897.772 kb on + strandat 897.793 kb on + strandat 897.948 kb on + strandat 897.949 kb on - strandat 897.967 kb on + strandat 897.967 kb on + strandat 898.039 kb on + strand, within Ac3H11_2615at 898.039 kb on + strand, within Ac3H11_2615at 898.180 kb on + strand, within Ac3H11_2615at 898.279 kb on + strandat 898.285 kb on + strandat 898.285 kb on + strandat 898.285 kb on + strandat 898.285 kb on + strandat 898.285 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH10
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896,998 - -1.3
896,998 - +0.6
897,066 + +1.9
897,066 + -0.9
897,066 + -0.0
897,126 + +0.6
897,126 + -0.6
897,126 + -2.3
897,127 - +0.5
897,127 - +0.5
897,127 - +0.6
897,130 + +0.0
897,130 + -0.7
897,131 - -1.0
897,131 - +1.3
897,131 - -0.4
897,295 + Ac3H11_2614 0.22 +1.3
897,295 + Ac3H11_2614 0.22 +0.2
897,295 + Ac3H11_2614 0.22 +1.9
897,461 - Ac3H11_2614 0.47 +1.0
897,461 - Ac3H11_2614 0.47 +1.0
897,493 + Ac3H11_2614 0.52 -0.7
897,494 - Ac3H11_2614 0.52 +0.0
897,494 - Ac3H11_2614 0.52 -0.8
897,494 - Ac3H11_2614 0.52 -2.9
897,496 + Ac3H11_2614 0.53 +1.4
897,496 + Ac3H11_2614 0.53 -3.3
897,496 + Ac3H11_2614 0.53 -2.4
897,497 - Ac3H11_2614 0.53 +1.0
897,497 - Ac3H11_2614 0.53 +0.5
897,497 - Ac3H11_2614 0.53 -1.2
897,497 - Ac3H11_2614 0.53 -3.1
897,497 - Ac3H11_2614 0.53 +1.2
897,507 + Ac3H11_2614 0.54 +1.6
897,507 + Ac3H11_2614 0.54 +1.4
897,507 + Ac3H11_2614 0.54 +0.9
897,512 + Ac3H11_2614 0.55 -0.3
897,512 + Ac3H11_2614 0.55 +0.0
897,512 + Ac3H11_2614 0.55 +0.9
897,512 + Ac3H11_2614 0.55 -1.0
897,512 + Ac3H11_2614 0.55 +0.3
897,513 - Ac3H11_2614 0.55 +1.2
897,513 - Ac3H11_2614 0.55 +1.0
897,513 - Ac3H11_2614 0.55 -1.4
897,517 + Ac3H11_2614 0.56 +0.6
897,517 + Ac3H11_2614 0.56 +0.1
897,517 + Ac3H11_2614 0.56 -0.3
897,517 + Ac3H11_2614 0.56 -1.0
897,517 + Ac3H11_2614 0.56 -0.3
897,518 - Ac3H11_2614 0.56 +0.2
897,518 - Ac3H11_2614 0.56 -0.5
897,529 + Ac3H11_2614 0.58 +0.4
897,529 + Ac3H11_2614 0.58 +0.4
897,529 + Ac3H11_2614 0.58 -0.3
897,530 - Ac3H11_2614 0.58 +0.6
897,530 - Ac3H11_2614 0.58 -2.0
897,530 - Ac3H11_2614 0.58 -2.0
897,535 + Ac3H11_2614 0.59 -1.2
897,536 - Ac3H11_2614 0.59 -2.8
897,550 + Ac3H11_2614 0.61 -1.5
897,550 + Ac3H11_2614 0.61 -1.0
897,551 - Ac3H11_2614 0.61 -0.5
897,551 - Ac3H11_2614 0.61 +0.0
897,551 - Ac3H11_2614 0.61 -1.7
897,551 - Ac3H11_2614 0.61 +1.5
897,551 - Ac3H11_2614 0.61 -1.8
897,551 - Ac3H11_2614 0.61 -0.9
897,551 - Ac3H11_2614 0.61 +1.7
897,551 - Ac3H11_2614 0.61 +1.2
897,619 + Ac3H11_2614 0.71 -1.1
897,619 + Ac3H11_2614 0.71 -0.2
897,619 + Ac3H11_2614 0.71 -0.5
897,619 + Ac3H11_2614 0.71 -2.5
897,619 + Ac3H11_2614 0.71 +0.5
897,619 + Ac3H11_2614 0.71 +0.0
897,619 + Ac3H11_2614 0.71 -0.2
897,619 + Ac3H11_2614 0.71 +0.4
897,620 - Ac3H11_2614 0.72 -1.1
897,620 - Ac3H11_2614 0.72 +0.3
897,620 - Ac3H11_2614 0.72 +0.9
897,620 - Ac3H11_2614 0.72 +1.0
897,620 - Ac3H11_2614 0.72 +0.4
897,640 + Ac3H11_2614 0.75 +0.7
897,640 + Ac3H11_2614 0.75 +1.6
897,641 - Ac3H11_2614 0.75 +1.3
897,658 + Ac3H11_2614 0.77 +1.1
897,659 - Ac3H11_2614 0.78 +1.0
897,689 - Ac3H11_2614 0.82 -1.5
897,706 + Ac3H11_2614 0.85 +0.6
897,707 - Ac3H11_2614 0.85 +0.6
897,707 - Ac3H11_2614 0.85 -0.1
897,707 - Ac3H11_2614 0.85 +0.4
897,707 - Ac3H11_2614 0.85 -0.4
897,721 + Ac3H11_2614 0.87 +0.9
897,721 + Ac3H11_2614 0.87 +0.6
897,721 + Ac3H11_2614 0.87 -1.2
897,721 + Ac3H11_2614 0.87 -1.4
897,721 + Ac3H11_2614 0.87 -0.3
897,721 + Ac3H11_2614 0.87 +3.1
897,721 + Ac3H11_2614 0.87 -0.9
897,721 + Ac3H11_2614 0.87 +1.0
897,721 + Ac3H11_2614 0.87 +0.6
897,721 + Ac3H11_2614 0.87 -0.4
897,722 - Ac3H11_2614 0.87 -1.5
897,722 - Ac3H11_2614 0.87 -1.0
897,722 - Ac3H11_2614 0.87 +2.8
897,722 - Ac3H11_2614 0.87 -1.5
897,722 - Ac3H11_2614 0.87 +1.5
897,722 - Ac3H11_2614 0.87 -1.2
897,722 - Ac3H11_2614 0.87 -0.7
897,722 - Ac3H11_2614 0.87 -0.7
897,722 - Ac3H11_2614 0.87 +0.2
897,722 - Ac3H11_2614 0.87 +0.0
897,722 - Ac3H11_2614 0.87 +1.7
897,722 - Ac3H11_2614 0.87 -2.3
897,722 - Ac3H11_2614 0.87 +2.0
897,751 + -0.2
897,751 + +0.6
897,757 + -2.3
897,758 - +0.9
897,772 + -0.7
897,772 + -0.1
897,793 + -0.6
897,948 + +2.0
897,949 - -0.5
897,967 + -1.3
897,967 + -2.6
898,039 + Ac3H11_2615 0.16 +1.2
898,039 + Ac3H11_2615 0.16 -2.2
898,180 + Ac3H11_2615 0.60 -2.6
898,279 + +0.4
898,285 + +2.6
898,285 + +0.4
898,285 + +0.2
898,285 + +1.4
898,285 + +0.2

Or see this region's nucleotide sequence