Experiment: LB, pH10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_2360 and Ac3H11_2361 are separated by 207 nucleotides Ac3H11_2361 and Ac3H11_2362 are separated by 118 nucleotides
Ac3H11_2360 - Mlr7906 protein, at 617,612 to 618,082
_2360
Ac3H11_2361 - hypothetical protein, at 618,290 to 618,625
_2361
Ac3H11_2362 - 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31), at 618,744 to 619,628
_2362
Position (kb) 618
619
620 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 617.805 kb on + strand, within Ac3H11_2360 at 617.805 kb on + strand, within Ac3H11_2360 at 617.806 kb on - strand, within Ac3H11_2360 at 617.806 kb on - strand, within Ac3H11_2360 at 617.806 kb on - strand, within Ac3H11_2360 at 617.858 kb on + strand, within Ac3H11_2360 at 617.858 kb on + strand, within Ac3H11_2360 at 617.859 kb on - strand, within Ac3H11_2360 at 617.906 kb on + strand, within Ac3H11_2360 at 617.906 kb on + strand, within Ac3H11_2360 at 617.907 kb on - strand, within Ac3H11_2360 at 617.930 kb on + strand, within Ac3H11_2360 at 617.930 kb on + strand, within Ac3H11_2360 at 617.931 kb on - strand, within Ac3H11_2360 at 617.931 kb on - strand, within Ac3H11_2360 at 617.931 kb on - strand, within Ac3H11_2360 at 617.931 kb on - strand, within Ac3H11_2360 at 618.083 kb on + strand at 618.083 kb on + strand at 618.084 kb on - strand at 618.084 kb on - strand at 618.104 kb on - strand at 618.104 kb on - strand at 618.194 kb on + strand at 618.194 kb on + strand at 618.232 kb on - strand at 618.232 kb on - strand at 618.237 kb on + strand at 618.237 kb on + strand at 618.237 kb on + strand at 618.238 kb on - strand at 618.238 kb on - strand at 618.238 kb on - strand at 618.238 kb on - strand at 618.238 kb on - strand at 618.238 kb on - strand at 618.344 kb on + strand, within Ac3H11_2361 at 618.344 kb on + strand, within Ac3H11_2361 at 618.344 kb on + strand, within Ac3H11_2361 at 618.344 kb on + strand, within Ac3H11_2361 at 618.344 kb on + strand, within Ac3H11_2361 at 618.344 kb on + strand, within Ac3H11_2361 at 618.344 kb on + strand, within Ac3H11_2361 at 618.344 kb on + strand, within Ac3H11_2361 at 618.344 kb on + strand, within Ac3H11_2361 at 618.345 kb on - strand, within Ac3H11_2361 at 618.357 kb on - strand, within Ac3H11_2361 at 618.545 kb on + strand, within Ac3H11_2361 at 618.545 kb on + strand, within Ac3H11_2361 at 618.546 kb on - strand, within Ac3H11_2361 at 618.690 kb on - strand at 619.040 kb on + strand, within Ac3H11_2362 at 619.041 kb on - strand, within Ac3H11_2362 at 619.041 kb on - strand, within Ac3H11_2362 at 619.041 kb on - strand, within Ac3H11_2362 at 619.395 kb on + strand, within Ac3H11_2362 at 619.395 kb on + strand, within Ac3H11_2362 at 619.395 kb on + strand, within Ac3H11_2362 at 619.395 kb on + strand, within Ac3H11_2362 at 619.396 kb on - strand, within Ac3H11_2362 at 619.396 kb on - strand, within Ac3H11_2362 at 619.396 kb on - strand, within Ac3H11_2362 at 619.396 kb on - strand, within Ac3H11_2362 at 619.396 kb on - strand, within Ac3H11_2362 at 619.396 kb on - strand, within Ac3H11_2362 at 619.396 kb on - strand, within Ac3H11_2362 at 619.396 kb on - strand, within Ac3H11_2362 at 619.483 kb on + strand, within Ac3H11_2362 at 619.484 kb on - strand, within Ac3H11_2362 at 619.484 kb on - strand, within Ac3H11_2362 at 619.555 kb on - strand at 619.555 kb on - strand at 619.555 kb on - strand at 619.605 kb on - strand at 619.786 kb on + strand at 619.797 kb on + strand at 619.797 kb on + strand at 619.797 kb on + strand at 619.797 kb on + strand at 619.798 kb on - strand at 619.798 kb on - strand at 619.798 kb on - strand at 619.798 kb on - strand at 619.798 kb on - strand at 619.798 kb on - strand at 619.798 kb on - strand at 619.798 kb on - strand at 619.798 kb on - strand at 619.873 kb on - strand at 620.104 kb on + strand at 620.104 kb on + strand at 620.104 kb on + strand at 620.105 kb on - strand at 620.105 kb on - strand at 620.126 kb on - strand at 620.197 kb on - strand at 620.197 kb on - strand at 620.203 kb on + strand at 620.203 kb on + strand at 620.203 kb on + strand at 620.204 kb on - strand at 620.204 kb on - strand at 620.223 kb on - strand at 620.223 kb on - strand at 620.224 kb on + strand at 620.224 kb on + strand at 620.224 kb on + strand at 620.225 kb on - strand at 620.225 kb on - strand at 620.227 kb on + strand at 620.227 kb on + strand at 620.227 kb on + strand at 620.227 kb on + strand at 620.228 kb on - strand at 620.228 kb on - strand at 620.228 kb on - strand at 620.228 kb on - strand at 620.231 kb on + strand at 620.232 kb on - strand at 620.232 kb on - strand at 620.266 kb on + strand at 620.266 kb on + strand at 620.266 kb on + strand at 620.267 kb on - strand at 620.267 kb on - strand at 620.267 kb on - strand at 620.267 kb on - strand at 620.274 kb on + strand at 620.274 kb on + strand at 620.274 kb on + strand at 620.274 kb on + strand at 620.274 kb on + strand at 620.274 kb on + strand at 620.274 kb on + strand at 620.274 kb on + strand at 620.275 kb on - strand at 620.275 kb on - strand at 620.275 kb on - strand at 620.275 kb on - strand at 620.275 kb on - strand at 620.275 kb on - strand at 620.275 kb on - strand at 620.275 kb on - strand at 620.277 kb on + strand at 620.277 kb on + strand at 620.277 kb on + strand at 620.278 kb on - strand at 620.278 kb on - strand at 620.278 kb on - strand at 620.278 kb on - strand at 620.278 kb on - strand at 620.295 kb on + strand at 620.295 kb on + strand at 620.295 kb on + strand at 620.295 kb on + strand at 620.295 kb on + strand at 620.296 kb on - strand at 620.296 kb on - strand at 620.296 kb on - strand at 620.296 kb on - strand at 620.324 kb on + strand at 620.324 kb on + strand at 620.324 kb on + strand at 620.324 kb on + strand at 620.324 kb on + strand at 620.324 kb on + strand at 620.324 kb on + strand at 620.324 kb on + strand at 620.324 kb on + strand at 620.324 kb on + strand at 620.324 kb on + strand at 620.324 kb on + strand at 620.324 kb on + strand at 620.324 kb on + strand at 620.324 kb on + strand at 620.325 kb on + strand at 620.325 kb on - strand at 620.325 kb on - strand at 620.325 kb on - strand at 620.325 kb on - strand at 620.325 kb on - strand at 620.325 kb on - strand at 620.325 kb on - strand at 620.325 kb on - strand at 620.325 kb on - strand at 620.325 kb on - strand at 620.325 kb on - strand at 620.325 kb on - strand at 620.325 kb on - strand at 620.325 kb on - strand at 620.325 kb on - strand at 620.325 kb on - strand at 620.325 kb on - strand at 620.325 kb on - strand at 620.362 kb on + strand at 620.362 kb on + strand at 620.363 kb on - strand at 620.363 kb on - strand at 620.363 kb on - strand at 620.381 kb on + strand at 620.381 kb on + strand at 620.382 kb on - strand at 620.382 kb on - strand at 620.382 kb on - strand at 620.382 kb on - strand at 620.535 kb on + strand at 620.535 kb on + strand at 620.565 kb on - strand at 620.575 kb on + strand at 620.575 kb on + strand at 620.576 kb on - strand at 620.576 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH10 remove 617,805 + Ac3H11_2360 0.41 +0.6 617,805 + Ac3H11_2360 0.41 -0.1 617,806 - Ac3H11_2360 0.41 -0.8 617,806 - Ac3H11_2360 0.41 +0.8 617,806 - Ac3H11_2360 0.41 -1.8 617,858 + Ac3H11_2360 0.52 -0.5 617,858 + Ac3H11_2360 0.52 +0.5 617,859 - Ac3H11_2360 0.52 -2.3 617,906 + Ac3H11_2360 0.62 +1.3 617,906 + Ac3H11_2360 0.62 -0.5 617,907 - Ac3H11_2360 0.63 +1.9 617,930 + Ac3H11_2360 0.68 -3.1 617,930 + Ac3H11_2360 0.68 +1.9 617,931 - Ac3H11_2360 0.68 +0.8 617,931 - Ac3H11_2360 0.68 -0.9 617,931 - Ac3H11_2360 0.68 -0.4 617,931 - Ac3H11_2360 0.68 -0.0 618,083 + -1.0 618,083 + -0.8 618,084 - -1.0 618,084 - -0.5 618,104 - +0.7 618,104 - -0.1 618,194 + +0.4 618,194 + +1.0 618,232 - +0.5 618,232 - -0.0 618,237 + -0.6 618,237 + -3.5 618,237 + -1.1 618,238 - -0.4 618,238 - -1.4 618,238 - -0.7 618,238 - -0.5 618,238 - +0.8 618,238 - +0.8 618,344 + Ac3H11_2361 0.16 -0.4 618,344 + Ac3H11_2361 0.16 -1.7 618,344 + Ac3H11_2361 0.16 +0.3 618,344 + Ac3H11_2361 0.16 +0.8 618,344 + Ac3H11_2361 0.16 -1.1 618,344 + Ac3H11_2361 0.16 +1.5 618,344 + Ac3H11_2361 0.16 -0.2 618,344 + Ac3H11_2361 0.16 -0.1 618,344 + Ac3H11_2361 0.16 -0.9 618,345 - Ac3H11_2361 0.16 -0.1 618,357 - Ac3H11_2361 0.20 +0.5 618,545 + Ac3H11_2361 0.76 +0.5 618,545 + Ac3H11_2361 0.76 -1.0 618,546 - Ac3H11_2361 0.76 +0.9 618,690 - -1.4 619,040 + Ac3H11_2362 0.33 +0.1 619,041 - Ac3H11_2362 0.34 -1.9 619,041 - Ac3H11_2362 0.34 -0.5 619,041 - Ac3H11_2362 0.34 +0.5 619,395 + Ac3H11_2362 0.74 +0.8 619,395 + Ac3H11_2362 0.74 -0.4 619,395 + Ac3H11_2362 0.74 -1.7 619,395 + Ac3H11_2362 0.74 +1.5 619,396 - Ac3H11_2362 0.74 -2.5 619,396 - Ac3H11_2362 0.74 +0.0 619,396 - Ac3H11_2362 0.74 -2.6 619,396 - Ac3H11_2362 0.74 +1.8 619,396 - Ac3H11_2362 0.74 -0.5 619,396 - Ac3H11_2362 0.74 -0.2 619,396 - Ac3H11_2362 0.74 -0.0 619,396 - Ac3H11_2362 0.74 -0.5 619,483 + Ac3H11_2362 0.84 +0.3 619,484 - Ac3H11_2362 0.84 +1.7 619,484 - Ac3H11_2362 0.84 -0.3 619,555 - -0.4 619,555 - -1.5 619,555 - -0.7 619,605 - +0.2 619,786 + -0.7 619,797 + +0.9 619,797 + +0.0 619,797 + -0.0 619,797 + -2.4 619,798 - +0.3 619,798 - -0.3 619,798 - +0.7 619,798 - +1.2 619,798 - -2.1 619,798 - +0.4 619,798 - -2.0 619,798 - -1.3 619,798 - -1.0 619,873 - -1.1 620,104 + -1.7 620,104 + -0.6 620,104 + -1.0 620,105 - +1.5 620,105 - -0.5 620,126 - +1.0 620,197 - +0.2 620,197 - +1.2 620,203 + -0.9 620,203 + +1.1 620,203 + -1.3 620,204 - +0.0 620,204 - -2.1 620,223 - +0.4 620,223 - -1.3 620,224 + -0.8 620,224 + -0.2 620,224 + -1.7 620,225 - -3.9 620,225 - -0.4 620,227 + +1.2 620,227 + -0.0 620,227 + +0.0 620,227 + +0.4 620,228 - +1.5 620,228 - -1.1 620,228 - -1.7 620,228 - +1.4 620,231 + -0.4 620,232 - -0.9 620,232 - -0.4 620,266 + +2.8 620,266 + +2.8 620,266 + -3.5 620,267 - -0.6 620,267 - +0.7 620,267 - -0.9 620,267 - -1.6 620,274 + +1.6 620,274 + +0.3 620,274 + -1.2 620,274 + +0.3 620,274 + -0.0 620,274 + +1.1 620,274 + +0.3 620,274 + -2.7 620,275 - -2.3 620,275 - +0.1 620,275 - +0.3 620,275 - -1.6 620,275 - -1.3 620,275 - +3.6 620,275 - -3.8 620,275 - +0.9 620,277 + +0.8 620,277 + +0.6 620,277 + +0.6 620,278 - -0.3 620,278 - +1.5 620,278 - -1.0 620,278 - +0.9 620,278 - -0.6 620,295 + -1.2 620,295 + +0.6 620,295 + -1.7 620,295 + +1.0 620,295 + +1.8 620,296 - -0.4 620,296 - -0.3 620,296 - -2.4 620,296 - -2.2 620,324 + +0.6 620,324 + +1.5 620,324 + -0.9 620,324 + +2.0 620,324 + +0.2 620,324 + +1.2 620,324 + -0.9 620,324 + +0.5 620,324 + -0.5 620,324 + +0.3 620,324 + -0.7 620,324 + +0.0 620,324 + +0.3 620,324 + -0.8 620,324 + -0.5 620,325 + +0.9 620,325 - +0.7 620,325 - +1.7 620,325 - +1.0 620,325 - -0.6 620,325 - -0.5 620,325 - -2.5 620,325 - +0.1 620,325 - +0.3 620,325 - +0.4 620,325 - -0.2 620,325 - -0.8 620,325 - +1.3 620,325 - +1.2 620,325 - -0.2 620,325 - +1.3 620,325 - -1.3 620,325 - +0.9 620,325 - -1.3 620,362 + -1.2 620,362 + +0.7 620,363 - +2.1 620,363 - +1.7 620,363 - -1.2 620,381 + -0.6 620,381 + -3.0 620,382 - +1.3 620,382 - +0.9 620,382 - +0.1 620,382 - -3.1 620,535 + +0.6 620,535 + -1.2 620,565 - -0.1 620,575 + +0.2 620,575 + -0.1 620,576 - +0.6 620,576 - -2.2
Or see this region's nucleotide sequence