Experiment: LB, pH10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_2232 and Ac3H11_2233 are separated by 320 nucleotides Ac3H11_2233 and Ac3H11_2234 are separated by 214 nucleotides
Ac3H11_2232 - Zinc-regulated outer membrane receptor, at 467,354 to 469,567
_2232
Ac3H11_2233 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 469,888 to 471,510
_2233
Ac3H11_2234 - Probable mdcF malonate transporter, at 471,725 to 472,678
_2234
Position (kb) 469
470
471
472 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 468.926 kb on + strand, within Ac3H11_2232 at 468.959 kb on + strand, within Ac3H11_2232 at 468.960 kb on - strand, within Ac3H11_2232 at 468.960 kb on - strand, within Ac3H11_2232 at 468.960 kb on - strand, within Ac3H11_2232 at 468.960 kb on - strand, within Ac3H11_2232 at 468.960 kb on - strand, within Ac3H11_2232 at 469.079 kb on + strand, within Ac3H11_2232 at 469.079 kb on + strand, within Ac3H11_2232 at 469.079 kb on + strand, within Ac3H11_2232 at 469.079 kb on + strand, within Ac3H11_2232 at 469.079 kb on + strand, within Ac3H11_2232 at 469.079 kb on + strand, within Ac3H11_2232 at 469.079 kb on + strand, within Ac3H11_2232 at 469.079 kb on + strand, within Ac3H11_2232 at 469.079 kb on + strand, within Ac3H11_2232 at 469.079 kb on + strand, within Ac3H11_2232 at 469.079 kb on + strand, within Ac3H11_2232 at 469.079 kb on + strand, within Ac3H11_2232 at 469.079 kb on + strand, within Ac3H11_2232 at 469.079 kb on + strand, within Ac3H11_2232 at 469.079 kb on + strand, within Ac3H11_2232 at 469.079 kb on + strand, within Ac3H11_2232 at 469.079 kb on + strand, within Ac3H11_2232 at 469.079 kb on + strand, within Ac3H11_2232 at 469.080 kb on - strand, within Ac3H11_2232 at 469.080 kb on - strand, within Ac3H11_2232 at 469.080 kb on - strand, within Ac3H11_2232 at 469.080 kb on - strand, within Ac3H11_2232 at 469.080 kb on - strand, within Ac3H11_2232 at 469.080 kb on - strand, within Ac3H11_2232 at 469.080 kb on - strand, within Ac3H11_2232 at 469.080 kb on - strand, within Ac3H11_2232 at 469.080 kb on - strand, within Ac3H11_2232 at 469.080 kb on - strand, within Ac3H11_2232 at 469.080 kb on - strand, within Ac3H11_2232 at 469.080 kb on - strand, within Ac3H11_2232 at 469.080 kb on - strand, within Ac3H11_2232 at 469.080 kb on - strand, within Ac3H11_2232 at 469.080 kb on - strand, within Ac3H11_2232 at 469.080 kb on - strand, within Ac3H11_2232 at 469.080 kb on - strand, within Ac3H11_2232 at 469.080 kb on - strand, within Ac3H11_2232 at 469.085 kb on + strand, within Ac3H11_2232 at 469.085 kb on + strand, within Ac3H11_2232 at 469.085 kb on + strand, within Ac3H11_2232 at 469.085 kb on + strand, within Ac3H11_2232 at 469.085 kb on + strand, within Ac3H11_2232 at 469.085 kb on + strand, within Ac3H11_2232 at 469.085 kb on + strand, within Ac3H11_2232 at 469.085 kb on + strand, within Ac3H11_2232 at 469.085 kb on + strand, within Ac3H11_2232 at 469.085 kb on + strand, within Ac3H11_2232 at 469.085 kb on + strand, within Ac3H11_2232 at 469.086 kb on - strand, within Ac3H11_2232 at 469.086 kb on - strand, within Ac3H11_2232 at 469.086 kb on - strand, within Ac3H11_2232 at 469.086 kb on - strand, within Ac3H11_2232 at 469.086 kb on - strand, within Ac3H11_2232 at 469.086 kb on - strand, within Ac3H11_2232 at 469.086 kb on - strand, within Ac3H11_2232 at 469.086 kb on - strand, within Ac3H11_2232 at 469.086 kb on - strand, within Ac3H11_2232 at 469.130 kb on + strand, within Ac3H11_2232 at 469.130 kb on + strand, within Ac3H11_2232 at 469.130 kb on + strand, within Ac3H11_2232 at 469.130 kb on + strand, within Ac3H11_2232 at 469.130 kb on + strand, within Ac3H11_2232 at 469.130 kb on + strand, within Ac3H11_2232 at 469.131 kb on - strand, within Ac3H11_2232 at 469.131 kb on - strand, within Ac3H11_2232 at 469.131 kb on - strand, within Ac3H11_2232 at 469.412 kb on + strand at 469.412 kb on + strand at 469.412 kb on + strand at 469.413 kb on - strand at 469.413 kb on - strand at 469.413 kb on - strand at 469.451 kb on + strand at 469.451 kb on + strand at 469.451 kb on + strand at 469.451 kb on + strand at 469.452 kb on - strand at 469.452 kb on - strand at 469.452 kb on - strand at 469.452 kb on - strand at 469.452 kb on - strand at 469.487 kb on + strand at 469.487 kb on + strand at 469.488 kb on - strand at 469.697 kb on - strand at 469.705 kb on + strand at 469.705 kb on + strand at 469.705 kb on + strand at 469.705 kb on + strand at 469.706 kb on - strand at 469.706 kb on - strand at 469.706 kb on - strand at 469.706 kb on - strand at 469.706 kb on - strand at 469.706 kb on - strand at 469.744 kb on + strand at 469.745 kb on - strand at 469.875 kb on + strand at 469.975 kb on + strand at 469.975 kb on + strand at 469.975 kb on + strand at 469.975 kb on + strand at 469.975 kb on + strand at 469.976 kb on - strand at 469.976 kb on - strand at 470.122 kb on + strand, within Ac3H11_2233 at 470.311 kb on - strand, within Ac3H11_2233 at 470.443 kb on + strand, within Ac3H11_2233 at 470.443 kb on + strand, within Ac3H11_2233 at 470.443 kb on + strand, within Ac3H11_2233 at 470.443 kb on + strand, within Ac3H11_2233 at 470.444 kb on - strand, within Ac3H11_2233 at 470.444 kb on - strand, within Ac3H11_2233 at 470.468 kb on - strand, within Ac3H11_2233 at 470.468 kb on - strand, within Ac3H11_2233 at 470.468 kb on - strand, within Ac3H11_2233 at 470.468 kb on - strand, within Ac3H11_2233 at 470.995 kb on + strand, within Ac3H11_2233 at 470.995 kb on + strand, within Ac3H11_2233 at 470.996 kb on - strand, within Ac3H11_2233 at 470.996 kb on - strand, within Ac3H11_2233 at 470.996 kb on - strand, within Ac3H11_2233 at 470.996 kb on - strand, within Ac3H11_2233 at 471.172 kb on + strand, within Ac3H11_2233 at 471.172 kb on + strand, within Ac3H11_2233 at 471.172 kb on + strand, within Ac3H11_2233 at 471.172 kb on + strand, within Ac3H11_2233 at 471.172 kb on + strand, within Ac3H11_2233 at 471.172 kb on + strand, within Ac3H11_2233 at 471.172 kb on + strand, within Ac3H11_2233 at 471.173 kb on - strand, within Ac3H11_2233 at 471.173 kb on - strand, within Ac3H11_2233 at 471.173 kb on - strand, within Ac3H11_2233 at 471.173 kb on - strand, within Ac3H11_2233 at 471.173 kb on - strand, within Ac3H11_2233 at 471.173 kb on - strand, within Ac3H11_2233 at 471.355 kb on + strand at 471.355 kb on + strand at 471.355 kb on + strand at 471.355 kb on + strand at 471.355 kb on + strand at 471.355 kb on + strand at 471.356 kb on - strand at 471.439 kb on + strand at 471.439 kb on + strand at 471.439 kb on + strand at 471.439 kb on + strand at 471.439 kb on + strand at 471.440 kb on - strand at 471.466 kb on + strand at 471.467 kb on - strand at 471.508 kb on + strand at 471.509 kb on - strand at 471.509 kb on - strand at 471.583 kb on + strand at 471.588 kb on - strand at 471.602 kb on - strand at 471.612 kb on + strand at 471.652 kb on + strand at 471.652 kb on + strand at 471.653 kb on - strand at 471.653 kb on - strand at 471.653 kb on - strand at 471.670 kb on + strand at 471.785 kb on + strand at 471.785 kb on + strand at 471.785 kb on + strand at 471.785 kb on + strand at 471.785 kb on + strand at 471.785 kb on + strand at 471.785 kb on + strand at 471.785 kb on + strand at 471.786 kb on - strand at 471.786 kb on - strand at 471.786 kb on - strand at 471.786 kb on - strand at 471.789 kb on + strand at 471.789 kb on + strand at 471.789 kb on + strand at 471.929 kb on + strand, within Ac3H11_2234 at 471.929 kb on + strand, within Ac3H11_2234 at 471.929 kb on + strand, within Ac3H11_2234 at 471.929 kb on + strand, within Ac3H11_2234 at 471.930 kb on - strand, within Ac3H11_2234 at 471.930 kb on - strand, within Ac3H11_2234 at 471.930 kb on - strand, within Ac3H11_2234 at 471.930 kb on - strand, within Ac3H11_2234 at 471.930 kb on - strand, within Ac3H11_2234 at 471.953 kb on + strand, within Ac3H11_2234 at 471.953 kb on + strand, within Ac3H11_2234 at 471.953 kb on + strand, within Ac3H11_2234 at 471.953 kb on + strand, within Ac3H11_2234 at 471.953 kb on + strand, within Ac3H11_2234 at 471.991 kb on - strand, within Ac3H11_2234 at 471.991 kb on - strand, within Ac3H11_2234 at 471.991 kb on - strand, within Ac3H11_2234 at 472.053 kb on + strand, within Ac3H11_2234 at 472.054 kb on - strand, within Ac3H11_2234 at 472.251 kb on + strand, within Ac3H11_2234
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH10 remove 468,926 + Ac3H11_2232 0.71 -1.1 468,959 + Ac3H11_2232 0.72 -0.6 468,960 - Ac3H11_2232 0.73 -0.8 468,960 - Ac3H11_2232 0.73 +0.9 468,960 - Ac3H11_2232 0.73 -1.6 468,960 - Ac3H11_2232 0.73 -2.0 468,960 - Ac3H11_2232 0.73 +0.4 469,079 + Ac3H11_2232 0.78 +1.0 469,079 + Ac3H11_2232 0.78 +0.5 469,079 + Ac3H11_2232 0.78 -0.5 469,079 + Ac3H11_2232 0.78 +0.3 469,079 + Ac3H11_2232 0.78 +0.9 469,079 + Ac3H11_2232 0.78 -0.3 469,079 + Ac3H11_2232 0.78 +0.4 469,079 + Ac3H11_2232 0.78 +2.0 469,079 + Ac3H11_2232 0.78 -1.2 469,079 + Ac3H11_2232 0.78 +0.6 469,079 + Ac3H11_2232 0.78 -0.5 469,079 + Ac3H11_2232 0.78 +0.1 469,079 + Ac3H11_2232 0.78 +0.0 469,079 + Ac3H11_2232 0.78 +1.5 469,079 + Ac3H11_2232 0.78 +0.4 469,079 + Ac3H11_2232 0.78 -1.5 469,079 + Ac3H11_2232 0.78 -1.1 469,079 + Ac3H11_2232 0.78 +2.0 469,080 - Ac3H11_2232 0.78 +2.5 469,080 - Ac3H11_2232 0.78 +0.0 469,080 - Ac3H11_2232 0.78 -0.7 469,080 - Ac3H11_2232 0.78 -0.1 469,080 - Ac3H11_2232 0.78 -1.2 469,080 - Ac3H11_2232 0.78 +0.4 469,080 - Ac3H11_2232 0.78 -0.1 469,080 - Ac3H11_2232 0.78 +0.6 469,080 - Ac3H11_2232 0.78 +0.4 469,080 - Ac3H11_2232 0.78 -0.2 469,080 - Ac3H11_2232 0.78 +0.8 469,080 - Ac3H11_2232 0.78 +0.9 469,080 - Ac3H11_2232 0.78 +1.0 469,080 - Ac3H11_2232 0.78 +3.3 469,080 - Ac3H11_2232 0.78 -0.1 469,080 - Ac3H11_2232 0.78 -0.9 469,080 - Ac3H11_2232 0.78 -1.3 469,080 - Ac3H11_2232 0.78 +0.2 469,085 + Ac3H11_2232 0.78 +0.0 469,085 + Ac3H11_2232 0.78 +0.5 469,085 + Ac3H11_2232 0.78 -0.9 469,085 + Ac3H11_2232 0.78 +1.7 469,085 + Ac3H11_2232 0.78 -1.6 469,085 + Ac3H11_2232 0.78 -0.7 469,085 + Ac3H11_2232 0.78 +0.4 469,085 + Ac3H11_2232 0.78 -1.6 469,085 + Ac3H11_2232 0.78 -1.8 469,085 + Ac3H11_2232 0.78 +0.6 469,085 + Ac3H11_2232 0.78 -0.4 469,086 - Ac3H11_2232 0.78 +0.3 469,086 - Ac3H11_2232 0.78 -1.2 469,086 - Ac3H11_2232 0.78 +3.3 469,086 - Ac3H11_2232 0.78 +1.4 469,086 - Ac3H11_2232 0.78 +2.4 469,086 - Ac3H11_2232 0.78 +0.1 469,086 - Ac3H11_2232 0.78 -2.5 469,086 - Ac3H11_2232 0.78 +0.8 469,086 - Ac3H11_2232 0.78 -1.6 469,130 + Ac3H11_2232 0.80 +1.4 469,130 + Ac3H11_2232 0.80 -0.4 469,130 + Ac3H11_2232 0.80 +0.0 469,130 + Ac3H11_2232 0.80 -0.9 469,130 + Ac3H11_2232 0.80 -1.2 469,130 + Ac3H11_2232 0.80 -1.1 469,131 - Ac3H11_2232 0.80 -1.1 469,131 - Ac3H11_2232 0.80 -2.1 469,131 - Ac3H11_2232 0.80 +0.0 469,412 + +0.4 469,412 + -0.1 469,412 + +1.4 469,413 - -0.5 469,413 - +1.9 469,413 - -0.6 469,451 + -0.1 469,451 + +0.8 469,451 + -0.1 469,451 + -1.1 469,452 - -0.6 469,452 - +1.5 469,452 - -0.8 469,452 - +2.4 469,452 - -0.3 469,487 + +0.9 469,487 + +1.7 469,488 - +0.5 469,697 - +0.6 469,705 + -0.0 469,705 + +1.2 469,705 + -0.9 469,705 + -2.5 469,706 - +0.6 469,706 - -2.8 469,706 - -0.1 469,706 - -1.2 469,706 - +0.4 469,706 - -0.4 469,744 + +3.0 469,745 - +0.2 469,875 + -0.5 469,975 + -1.0 469,975 + -0.5 469,975 + +1.0 469,975 + -0.5 469,975 + +0.1 469,976 - -2.4 469,976 - -0.5 470,122 + Ac3H11_2233 0.14 +0.0 470,311 - Ac3H11_2233 0.26 -1.3 470,443 + Ac3H11_2233 0.34 -1.6 470,443 + Ac3H11_2233 0.34 +0.6 470,443 + Ac3H11_2233 0.34 -2.5 470,443 + Ac3H11_2233 0.34 -1.0 470,444 - Ac3H11_2233 0.34 -1.7 470,444 - Ac3H11_2233 0.34 -0.7 470,468 - Ac3H11_2233 0.36 -0.7 470,468 - Ac3H11_2233 0.36 -0.5 470,468 - Ac3H11_2233 0.36 +1.2 470,468 - Ac3H11_2233 0.36 -1.0 470,995 + Ac3H11_2233 0.68 +1.4 470,995 + Ac3H11_2233 0.68 +0.4 470,996 - Ac3H11_2233 0.68 -0.8 470,996 - Ac3H11_2233 0.68 +2.1 470,996 - Ac3H11_2233 0.68 +0.0 470,996 - Ac3H11_2233 0.68 -1.4 471,172 + Ac3H11_2233 0.79 -1.8 471,172 + Ac3H11_2233 0.79 -1.6 471,172 + Ac3H11_2233 0.79 -1.7 471,172 + Ac3H11_2233 0.79 -0.2 471,172 + Ac3H11_2233 0.79 +2.7 471,172 + Ac3H11_2233 0.79 -1.7 471,172 + Ac3H11_2233 0.79 -1.8 471,173 - Ac3H11_2233 0.79 -1.0 471,173 - Ac3H11_2233 0.79 -1.4 471,173 - Ac3H11_2233 0.79 +2.0 471,173 - Ac3H11_2233 0.79 -0.6 471,173 - Ac3H11_2233 0.79 +0.5 471,173 - Ac3H11_2233 0.79 +0.6 471,355 + +0.1 471,355 + +0.0 471,355 + -0.3 471,355 + +0.3 471,355 + +0.4 471,355 + -0.8 471,356 - -2.1 471,439 + +1.6 471,439 + +1.5 471,439 + -1.6 471,439 + +0.5 471,439 + +0.6 471,440 - +4.5 471,466 + +0.2 471,467 - +0.2 471,508 + -0.9 471,509 - -2.6 471,509 - +2.5 471,583 + +2.1 471,588 - -0.2 471,602 - +0.0 471,612 + -2.0 471,652 + +2.1 471,652 + -0.8 471,653 - -1.4 471,653 - -1.9 471,653 - -0.2 471,670 + +3.1 471,785 + -0.4 471,785 + +1.2 471,785 + -1.6 471,785 + -0.6 471,785 + -0.0 471,785 + +0.9 471,785 + +0.3 471,785 + +1.0 471,786 - +0.8 471,786 - -0.6 471,786 - -1.6 471,786 - -2.1 471,789 + -2.5 471,789 + +0.5 471,789 + +1.3 471,929 + Ac3H11_2234 0.21 +1.3 471,929 + Ac3H11_2234 0.21 -0.7 471,929 + Ac3H11_2234 0.21 -2.2 471,929 + Ac3H11_2234 0.21 -0.5 471,930 - Ac3H11_2234 0.21 +0.9 471,930 - Ac3H11_2234 0.21 -0.9 471,930 - Ac3H11_2234 0.21 -1.0 471,930 - Ac3H11_2234 0.21 -1.1 471,930 - Ac3H11_2234 0.21 -1.1 471,953 + Ac3H11_2234 0.24 -0.8 471,953 + Ac3H11_2234 0.24 -0.7 471,953 + Ac3H11_2234 0.24 -0.4 471,953 + Ac3H11_2234 0.24 -0.3 471,953 + Ac3H11_2234 0.24 -1.4 471,991 - Ac3H11_2234 0.28 -1.2 471,991 - Ac3H11_2234 0.28 -0.5 471,991 - Ac3H11_2234 0.28 -0.2 472,053 + Ac3H11_2234 0.34 +0.1 472,054 - Ac3H11_2234 0.34 +0.9 472,251 + Ac3H11_2234 0.55 -0.0
Or see this region's nucleotide sequence