Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1411

Experiment: LB, pH10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1409 and Ac3H11_1410 are separated by 317 nucleotidesAc3H11_1410 and Ac3H11_1411 are separated by 19 nucleotidesAc3H11_1411 and Ac3H11_1412 overlap by 11 nucleotidesAc3H11_1412 and Ac3H11_1413 are separated by 7 nucleotidesAc3H11_1413 and Ac3H11_1414 are separated by 10 nucleotides Ac3H11_1409 - Flagellar hook-length control protein FliK, at 99,030 to 100,382 _1409 Ac3H11_1410 - Flagellar biosynthesis protein FliL, at 100,700 to 101,281 _1410 Ac3H11_1411 - Flagellar motor switch protein FliM, at 101,301 to 102,305 _1411 Ac3H11_1412 - Flagellar motor switch protein FliN, at 102,295 to 102,738 _1412 Ac3H11_1413 - Flagellar biosynthesis protein FliQ, at 102,746 to 103,120 _1413 Ac3H11_1414 - Flagellar biosynthesis protein FliP, at 103,131 to 103,910 _1414 Position (kb) 101 102 103Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 100.366 kb on + strandat 100.366 kb on + strandat 100.366 kb on + strandat 100.366 kb on + strandat 100.366 kb on + strandat 100.367 kb on - strandat 100.591 kb on + strandat 100.592 kb on - strandat 100.601 kb on - strandat 100.601 kb on - strandat 100.601 kb on - strandat 100.603 kb on + strandat 100.603 kb on + strandat 100.604 kb on - strandat 100.610 kb on + strandat 100.611 kb on - strandat 100.625 kb on + strandat 100.657 kb on + strandat 100.657 kb on + strandat 100.658 kb on - strandat 101.012 kb on + strand, within Ac3H11_1410at 101.012 kb on + strand, within Ac3H11_1410at 101.012 kb on + strand, within Ac3H11_1410at 101.012 kb on + strand, within Ac3H11_1410at 101.012 kb on + strand, within Ac3H11_1410at 101.013 kb on - strand, within Ac3H11_1410at 101.013 kb on - strand, within Ac3H11_1410at 101.013 kb on - strand, within Ac3H11_1410at 101.013 kb on - strand, within Ac3H11_1410at 101.142 kb on - strand, within Ac3H11_1410at 101.142 kb on - strand, within Ac3H11_1410at 101.405 kb on - strand, within Ac3H11_1411at 101.412 kb on + strand, within Ac3H11_1411at 101.412 kb on + strand, within Ac3H11_1411at 101.412 kb on + strand, within Ac3H11_1411at 101.412 kb on + strand, within Ac3H11_1411at 101.412 kb on + strand, within Ac3H11_1411at 101.412 kb on + strand, within Ac3H11_1411at 101.412 kb on + strand, within Ac3H11_1411at 101.413 kb on - strand, within Ac3H11_1411at 101.413 kb on - strand, within Ac3H11_1411at 101.413 kb on - strand, within Ac3H11_1411at 101.413 kb on - strand, within Ac3H11_1411at 101.413 kb on - strand, within Ac3H11_1411at 101.413 kb on - strand, within Ac3H11_1411at 101.413 kb on - strand, within Ac3H11_1411at 101.413 kb on - strand, within Ac3H11_1411at 101.413 kb on - strand, within Ac3H11_1411at 101.413 kb on - strand, within Ac3H11_1411at 101.413 kb on - strand, within Ac3H11_1411at 101.413 kb on - strand, within Ac3H11_1411at 101.565 kb on + strand, within Ac3H11_1411at 101.565 kb on + strand, within Ac3H11_1411at 101.566 kb on - strand, within Ac3H11_1411at 101.684 kb on + strand, within Ac3H11_1411at 101.692 kb on - strand, within Ac3H11_1411at 101.692 kb on - strand, within Ac3H11_1411at 101.692 kb on - strand, within Ac3H11_1411at 101.692 kb on - strand, within Ac3H11_1411at 101.793 kb on + strand, within Ac3H11_1411at 101.793 kb on + strand, within Ac3H11_1411at 101.793 kb on + strand, within Ac3H11_1411at 101.793 kb on + strand, within Ac3H11_1411at 101.793 kb on + strand, within Ac3H11_1411at 101.794 kb on - strand, within Ac3H11_1411at 101.817 kb on + strand, within Ac3H11_1411at 101.817 kb on + strand, within Ac3H11_1411at 101.817 kb on + strand, within Ac3H11_1411at 101.817 kb on + strand, within Ac3H11_1411at 101.817 kb on + strand, within Ac3H11_1411at 101.818 kb on - strand, within Ac3H11_1411at 101.818 kb on - strand, within Ac3H11_1411at 101.818 kb on - strand, within Ac3H11_1411at 101.835 kb on + strand, within Ac3H11_1411at 101.835 kb on + strand, within Ac3H11_1411at 101.959 kb on - strand, within Ac3H11_1411at 101.959 kb on - strand, within Ac3H11_1411at 101.959 kb on - strand, within Ac3H11_1411at 101.959 kb on - strand, within Ac3H11_1411at 101.959 kb on - strand, within Ac3H11_1411at 101.959 kb on - strand, within Ac3H11_1411at 101.991 kb on + strand, within Ac3H11_1411at 101.991 kb on + strand, within Ac3H11_1411at 101.991 kb on + strand, within Ac3H11_1411at 101.991 kb on + strand, within Ac3H11_1411at 101.992 kb on - strand, within Ac3H11_1411at 101.992 kb on - strand, within Ac3H11_1411at 101.992 kb on - strand, within Ac3H11_1411at 101.992 kb on - strand, within Ac3H11_1411at 101.992 kb on - strand, within Ac3H11_1411at 101.992 kb on - strand, within Ac3H11_1411at 102.198 kb on - strand, within Ac3H11_1411at 102.198 kb on - strand, within Ac3H11_1411at 102.213 kb on + strandat 102.213 kb on + strandat 102.214 kb on - strandat 102.234 kb on + strandat 102.234 kb on + strandat 102.234 kb on + strandat 102.234 kb on + strandat 102.235 kb on - strandat 102.235 kb on - strandat 102.235 kb on - strandat 102.263 kb on + strandat 102.263 kb on + strandat 102.264 kb on - strandat 102.264 kb on - strandat 102.550 kb on + strand, within Ac3H11_1412at 102.550 kb on + strand, within Ac3H11_1412at 102.550 kb on + strand, within Ac3H11_1412at 102.550 kb on + strand, within Ac3H11_1412at 102.550 kb on + strand, within Ac3H11_1412at 102.550 kb on + strand, within Ac3H11_1412at 102.550 kb on + strand, within Ac3H11_1412at 102.550 kb on + strand, within Ac3H11_1412at 102.550 kb on + strand, within Ac3H11_1412at 102.550 kb on + strand, within Ac3H11_1412at 102.550 kb on + strand, within Ac3H11_1412at 102.550 kb on + strand, within Ac3H11_1412at 102.551 kb on - strand, within Ac3H11_1412at 102.551 kb on - strand, within Ac3H11_1412at 102.551 kb on - strand, within Ac3H11_1412at 102.551 kb on - strand, within Ac3H11_1412at 102.551 kb on - strand, within Ac3H11_1412at 102.551 kb on - strand, within Ac3H11_1412at 102.551 kb on - strand, within Ac3H11_1412at 102.551 kb on - strand, within Ac3H11_1412at 102.551 kb on - strand, within Ac3H11_1412at 102.551 kb on - strand, within Ac3H11_1412at 102.551 kb on - strand, within Ac3H11_1412at 102.551 kb on - strand, within Ac3H11_1412at 102.631 kb on + strand, within Ac3H11_1412at 102.632 kb on - strand, within Ac3H11_1412at 102.675 kb on - strand, within Ac3H11_1412at 102.736 kb on + strandat 102.764 kb on - strandat 103.284 kb on + strand, within Ac3H11_1414at 103.284 kb on + strand, within Ac3H11_1414at 103.285 kb on - strand, within Ac3H11_1414at 103.285 kb on - strand, within Ac3H11_1414at 103.285 kb on - strand, within Ac3H11_1414at 103.285 kb on - strand, within Ac3H11_1414at 103.285 kb on - strand, within Ac3H11_1414at 103.285 kb on - strand, within Ac3H11_1414

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH10
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100,366 + +1.9
100,366 + +0.2
100,366 + +0.3
100,366 + -1.6
100,366 + +0.3
100,367 - +0.0
100,591 + +0.6
100,592 - +0.4
100,601 - +2.5
100,601 - +0.4
100,601 - -2.7
100,603 + +2.2
100,603 + -0.2
100,604 - +0.8
100,610 + -0.6
100,611 - +0.3
100,625 + -0.3
100,657 + -0.3
100,657 + +0.4
100,658 - -1.4
101,012 + Ac3H11_1410 0.54 +0.2
101,012 + Ac3H11_1410 0.54 -1.2
101,012 + Ac3H11_1410 0.54 +0.8
101,012 + Ac3H11_1410 0.54 +0.3
101,012 + Ac3H11_1410 0.54 -0.6
101,013 - Ac3H11_1410 0.54 +1.4
101,013 - Ac3H11_1410 0.54 +0.0
101,013 - Ac3H11_1410 0.54 +0.8
101,013 - Ac3H11_1410 0.54 +1.1
101,142 - Ac3H11_1410 0.76 -3.1
101,142 - Ac3H11_1410 0.76 +0.4
101,405 - Ac3H11_1411 0.10 -2.3
101,412 + Ac3H11_1411 0.11 -0.4
101,412 + Ac3H11_1411 0.11 +1.2
101,412 + Ac3H11_1411 0.11 +0.6
101,412 + Ac3H11_1411 0.11 +1.3
101,412 + Ac3H11_1411 0.11 +1.2
101,412 + Ac3H11_1411 0.11 -0.6
101,412 + Ac3H11_1411 0.11 -0.5
101,413 - Ac3H11_1411 0.11 +2.1
101,413 - Ac3H11_1411 0.11 -1.8
101,413 - Ac3H11_1411 0.11 -0.7
101,413 - Ac3H11_1411 0.11 -0.8
101,413 - Ac3H11_1411 0.11 +0.4
101,413 - Ac3H11_1411 0.11 +0.0
101,413 - Ac3H11_1411 0.11 -0.2
101,413 - Ac3H11_1411 0.11 -0.1
101,413 - Ac3H11_1411 0.11 +2.0
101,413 - Ac3H11_1411 0.11 -0.1
101,413 - Ac3H11_1411 0.11 -0.1
101,413 - Ac3H11_1411 0.11 -0.1
101,565 + Ac3H11_1411 0.26 +1.2
101,565 + Ac3H11_1411 0.26 +0.2
101,566 - Ac3H11_1411 0.26 +0.3
101,684 + Ac3H11_1411 0.38 -2.3
101,692 - Ac3H11_1411 0.39 +0.4
101,692 - Ac3H11_1411 0.39 -2.5
101,692 - Ac3H11_1411 0.39 +1.6
101,692 - Ac3H11_1411 0.39 +0.8
101,793 + Ac3H11_1411 0.49 +0.2
101,793 + Ac3H11_1411 0.49 +0.6
101,793 + Ac3H11_1411 0.49 +1.5
101,793 + Ac3H11_1411 0.49 +0.3
101,793 + Ac3H11_1411 0.49 +1.3
101,794 - Ac3H11_1411 0.49 -0.0
101,817 + Ac3H11_1411 0.51 -3.1
101,817 + Ac3H11_1411 0.51 -2.4
101,817 + Ac3H11_1411 0.51 -0.4
101,817 + Ac3H11_1411 0.51 -1.8
101,817 + Ac3H11_1411 0.51 +0.1
101,818 - Ac3H11_1411 0.51 +0.8
101,818 - Ac3H11_1411 0.51 -2.2
101,818 - Ac3H11_1411 0.51 -0.2
101,835 + Ac3H11_1411 0.53 +1.1
101,835 + Ac3H11_1411 0.53 +1.2
101,959 - Ac3H11_1411 0.65 +1.2
101,959 - Ac3H11_1411 0.65 -3.2
101,959 - Ac3H11_1411 0.65 +1.1
101,959 - Ac3H11_1411 0.65 -0.2
101,959 - Ac3H11_1411 0.65 +0.3
101,959 - Ac3H11_1411 0.65 +0.8
101,991 + Ac3H11_1411 0.69 -2.1
101,991 + Ac3H11_1411 0.69 +2.4
101,991 + Ac3H11_1411 0.69 +1.2
101,991 + Ac3H11_1411 0.69 -1.1
101,992 - Ac3H11_1411 0.69 -2.1
101,992 - Ac3H11_1411 0.69 +0.1
101,992 - Ac3H11_1411 0.69 +1.6
101,992 - Ac3H11_1411 0.69 +0.4
101,992 - Ac3H11_1411 0.69 -0.9
101,992 - Ac3H11_1411 0.69 -0.4
102,198 - Ac3H11_1411 0.89 -2.1
102,198 - Ac3H11_1411 0.89 -0.8
102,213 + -1.0
102,213 + +0.5
102,214 - +0.2
102,234 + +0.0
102,234 + -0.4
102,234 + -1.7
102,234 + -2.2
102,235 - -1.3
102,235 - +0.6
102,235 - -2.5
102,263 + +0.5
102,263 + -0.9
102,264 - -2.0
102,264 - -1.8
102,550 + Ac3H11_1412 0.57 +0.4
102,550 + Ac3H11_1412 0.57 +0.4
102,550 + Ac3H11_1412 0.57 -0.6
102,550 + Ac3H11_1412 0.57 +0.7
102,550 + Ac3H11_1412 0.57 -1.6
102,550 + Ac3H11_1412 0.57 +0.1
102,550 + Ac3H11_1412 0.57 +1.2
102,550 + Ac3H11_1412 0.57 +0.8
102,550 + Ac3H11_1412 0.57 +1.3
102,550 + Ac3H11_1412 0.57 -0.1
102,550 + Ac3H11_1412 0.57 +0.5
102,550 + Ac3H11_1412 0.57 +0.8
102,551 - Ac3H11_1412 0.58 -2.2
102,551 - Ac3H11_1412 0.58 -1.4
102,551 - Ac3H11_1412 0.58 +1.2
102,551 - Ac3H11_1412 0.58 -1.7
102,551 - Ac3H11_1412 0.58 -2.1
102,551 - Ac3H11_1412 0.58 -0.0
102,551 - Ac3H11_1412 0.58 +1.1
102,551 - Ac3H11_1412 0.58 +3.3
102,551 - Ac3H11_1412 0.58 -0.2
102,551 - Ac3H11_1412 0.58 -0.1
102,551 - Ac3H11_1412 0.58 +1.7
102,551 - Ac3H11_1412 0.58 +3.3
102,631 + Ac3H11_1412 0.76 -0.1
102,632 - Ac3H11_1412 0.76 -0.0
102,675 - Ac3H11_1412 0.86 -0.9
102,736 + -1.8
102,764 - +1.7
103,284 + Ac3H11_1414 0.20 +0.5
103,284 + Ac3H11_1414 0.20 +0.0
103,285 - Ac3H11_1414 0.20 -0.1
103,285 - Ac3H11_1414 0.20 -0.3
103,285 - Ac3H11_1414 0.20 -0.6
103,285 - Ac3H11_1414 0.20 -1.1
103,285 - Ac3H11_1414 0.20 -1.9
103,285 - Ac3H11_1414 0.20 -1.2

Or see this region's nucleotide sequence