Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1301

Experiment: LB, pH10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1299 and Ac3H11_1300 are separated by 70 nucleotidesAc3H11_1300 and Ac3H11_1301 are separated by 265 nucleotidesAc3H11_1301 and Ac3H11_1302 are separated by 223 nucleotides Ac3H11_1299 - PhnB protein; putative DNA binding 3-demethylubiquinone-9 3-methyltransferase domain protein, at 114,339 to 114,767 _1299 Ac3H11_1300 - hypothetical protein, at 114,838 to 115,323 _1300 Ac3H11_1301 - MFS family multidrug efflux protein in Burkholderiaceae, unknown substrate, at 115,589 to 117,070 _1301 Ac3H11_1302 - Pirin, N-terminal:Pirin, C-terminal, at 117,294 to 118,391 _1302 Position (kb) 115 116 117 118Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 115.120 kb on + strand, within Ac3H11_1300at 115.121 kb on - strand, within Ac3H11_1300at 115.306 kb on + strandat 115.306 kb on + strandat 115.307 kb on - strandat 115.307 kb on - strandat 115.307 kb on - strandat 115.397 kb on + strandat 115.426 kb on + strandat 115.426 kb on + strandat 115.427 kb on - strandat 115.796 kb on + strand, within Ac3H11_1301at 115.796 kb on + strand, within Ac3H11_1301at 115.796 kb on + strand, within Ac3H11_1301at 115.796 kb on + strand, within Ac3H11_1301at 115.796 kb on + strand, within Ac3H11_1301at 115.796 kb on + strand, within Ac3H11_1301at 115.796 kb on + strand, within Ac3H11_1301at 115.796 kb on + strand, within Ac3H11_1301at 115.797 kb on - strand, within Ac3H11_1301at 115.797 kb on - strand, within Ac3H11_1301at 115.797 kb on - strand, within Ac3H11_1301at 115.797 kb on - strand, within Ac3H11_1301at 115.797 kb on - strand, within Ac3H11_1301at 115.797 kb on - strand, within Ac3H11_1301at 115.797 kb on - strand, within Ac3H11_1301at 115.797 kb on - strand, within Ac3H11_1301at 115.850 kb on + strand, within Ac3H11_1301at 115.850 kb on + strand, within Ac3H11_1301at 115.851 kb on - strand, within Ac3H11_1301at 116.054 kb on + strand, within Ac3H11_1301at 116.054 kb on + strand, within Ac3H11_1301at 116.054 kb on + strand, within Ac3H11_1301at 116.055 kb on - strand, within Ac3H11_1301at 116.055 kb on - strand, within Ac3H11_1301at 116.055 kb on - strand, within Ac3H11_1301at 116.055 kb on - strand, within Ac3H11_1301at 116.055 kb on - strand, within Ac3H11_1301at 116.171 kb on + strand, within Ac3H11_1301at 116.171 kb on + strand, within Ac3H11_1301at 116.172 kb on - strand, within Ac3H11_1301at 116.279 kb on + strand, within Ac3H11_1301at 116.279 kb on + strand, within Ac3H11_1301at 116.279 kb on + strand, within Ac3H11_1301at 116.279 kb on + strand, within Ac3H11_1301at 116.280 kb on - strand, within Ac3H11_1301at 116.280 kb on - strand, within Ac3H11_1301at 116.280 kb on - strand, within Ac3H11_1301at 116.280 kb on - strand, within Ac3H11_1301at 116.280 kb on - strand, within Ac3H11_1301at 116.280 kb on - strand, within Ac3H11_1301at 116.504 kb on + strand, within Ac3H11_1301at 116.504 kb on + strand, within Ac3H11_1301at 116.504 kb on + strand, within Ac3H11_1301at 116.505 kb on - strand, within Ac3H11_1301at 116.505 kb on - strand, within Ac3H11_1301at 116.505 kb on - strand, within Ac3H11_1301at 116.505 kb on - strand, within Ac3H11_1301at 116.525 kb on + strand, within Ac3H11_1301at 116.765 kb on - strand, within Ac3H11_1301at 116.796 kb on + strand, within Ac3H11_1301at 116.796 kb on + strand, within Ac3H11_1301at 116.796 kb on + strand, within Ac3H11_1301at 116.797 kb on - strand, within Ac3H11_1301at 117.085 kb on + strandat 117.086 kb on - strandat 117.241 kb on - strandat 117.504 kb on + strand, within Ac3H11_1302at 117.504 kb on + strand, within Ac3H11_1302at 117.504 kb on + strand, within Ac3H11_1302at 117.505 kb on - strand, within Ac3H11_1302at 118.035 kb on + strand, within Ac3H11_1302at 118.035 kb on + strand, within Ac3H11_1302at 118.035 kb on + strand, within Ac3H11_1302at 118.035 kb on + strand, within Ac3H11_1302at 118.035 kb on + strand, within Ac3H11_1302at 118.036 kb on - strand, within Ac3H11_1302

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH10
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115,120 + Ac3H11_1300 0.58 +1.8
115,121 - Ac3H11_1300 0.58 +1.1
115,306 + -1.0
115,306 + +0.1
115,307 - +0.6
115,307 - +1.2
115,307 - -0.4
115,397 + -0.6
115,426 + -1.2
115,426 + +0.4
115,427 - -0.5
115,796 + Ac3H11_1301 0.14 -0.7
115,796 + Ac3H11_1301 0.14 -1.3
115,796 + Ac3H11_1301 0.14 +0.4
115,796 + Ac3H11_1301 0.14 -1.2
115,796 + Ac3H11_1301 0.14 -0.2
115,796 + Ac3H11_1301 0.14 -0.0
115,796 + Ac3H11_1301 0.14 +1.4
115,796 + Ac3H11_1301 0.14 +1.1
115,797 - Ac3H11_1301 0.14 +1.2
115,797 - Ac3H11_1301 0.14 +0.8
115,797 - Ac3H11_1301 0.14 -1.0
115,797 - Ac3H11_1301 0.14 +0.1
115,797 - Ac3H11_1301 0.14 +0.3
115,797 - Ac3H11_1301 0.14 -0.0
115,797 - Ac3H11_1301 0.14 +0.0
115,797 - Ac3H11_1301 0.14 +0.7
115,850 + Ac3H11_1301 0.18 -1.9
115,850 + Ac3H11_1301 0.18 +1.6
115,851 - Ac3H11_1301 0.18 +1.3
116,054 + Ac3H11_1301 0.31 +0.2
116,054 + Ac3H11_1301 0.31 +0.4
116,054 + Ac3H11_1301 0.31 +1.3
116,055 - Ac3H11_1301 0.31 -2.2
116,055 - Ac3H11_1301 0.31 +1.3
116,055 - Ac3H11_1301 0.31 +3.0
116,055 - Ac3H11_1301 0.31 +0.7
116,055 - Ac3H11_1301 0.31 +2.4
116,171 + Ac3H11_1301 0.39 -1.8
116,171 + Ac3H11_1301 0.39 -1.0
116,172 - Ac3H11_1301 0.39 -2.2
116,279 + Ac3H11_1301 0.47 -2.2
116,279 + Ac3H11_1301 0.47 -0.7
116,279 + Ac3H11_1301 0.47 -0.6
116,279 + Ac3H11_1301 0.47 +3.9
116,280 - Ac3H11_1301 0.47 +1.0
116,280 - Ac3H11_1301 0.47 +1.6
116,280 - Ac3H11_1301 0.47 -0.7
116,280 - Ac3H11_1301 0.47 +2.0
116,280 - Ac3H11_1301 0.47 -0.1
116,280 - Ac3H11_1301 0.47 +1.5
116,504 + Ac3H11_1301 0.62 +0.3
116,504 + Ac3H11_1301 0.62 +0.2
116,504 + Ac3H11_1301 0.62 +2.3
116,505 - Ac3H11_1301 0.62 +0.8
116,505 - Ac3H11_1301 0.62 +1.8
116,505 - Ac3H11_1301 0.62 +1.1
116,505 - Ac3H11_1301 0.62 -1.0
116,525 + Ac3H11_1301 0.63 +1.4
116,765 - Ac3H11_1301 0.79 +0.8
116,796 + Ac3H11_1301 0.81 +0.3
116,796 + Ac3H11_1301 0.81 -0.6
116,796 + Ac3H11_1301 0.81 +0.6
116,797 - Ac3H11_1301 0.82 +1.9
117,085 + +1.2
117,086 - +0.4
117,241 - -0.0
117,504 + Ac3H11_1302 0.19 -0.3
117,504 + Ac3H11_1302 0.19 +0.6
117,504 + Ac3H11_1302 0.19 -0.0
117,505 - Ac3H11_1302 0.19 +0.1
118,035 + Ac3H11_1302 0.67 -0.1
118,035 + Ac3H11_1302 0.67 -2.0
118,035 + Ac3H11_1302 0.67 +0.9
118,035 + Ac3H11_1302 0.67 -0.9
118,035 + Ac3H11_1302 0.67 -2.3
118,036 - Ac3H11_1302 0.68 +1.9

Or see this region's nucleotide sequence