Experiment: LB, pH10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_1003 and Ac3H11_1004 are separated by 305 nucleotides Ac3H11_1004 and Ac3H11_1005 are separated by 1 nucleotides Ac3H11_1005 and Ac3H11_1006 are separated by 108 nucleotides
Ac3H11_1003 - ABC transporter substrate-binding protein, at 127,223 to 128,461
_1003
Ac3H11_1004 - ABC transporter permease protein, at 128,767 to 129,681
_1004
Ac3H11_1005 - Putrescine transport system permease protein potI, at 129,683 to 130,570
_1005
Ac3H11_1006 - Transcriptional regulator, GntR family, at 130,679 to 131,344
_1006
Position (kb) 128
129
130 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 127.808 kb on - strand, within Ac3H11_1003 at 127.859 kb on + strand, within Ac3H11_1003 at 127.859 kb on + strand, within Ac3H11_1003 at 127.859 kb on + strand, within Ac3H11_1003 at 127.859 kb on + strand, within Ac3H11_1003 at 127.859 kb on + strand, within Ac3H11_1003 at 127.859 kb on + strand, within Ac3H11_1003 at 127.860 kb on - strand, within Ac3H11_1003 at 127.860 kb on - strand, within Ac3H11_1003 at 127.860 kb on - strand, within Ac3H11_1003 at 127.860 kb on - strand, within Ac3H11_1003 at 127.865 kb on + strand, within Ac3H11_1003 at 127.865 kb on + strand, within Ac3H11_1003 at 128.090 kb on + strand, within Ac3H11_1003 at 128.156 kb on + strand, within Ac3H11_1003 at 128.157 kb on - strand, within Ac3H11_1003 at 128.157 kb on - strand, within Ac3H11_1003 at 128.198 kb on + strand, within Ac3H11_1003 at 128.199 kb on - strand, within Ac3H11_1003 at 128.199 kb on - strand, within Ac3H11_1003 at 128.219 kb on + strand, within Ac3H11_1003 at 128.220 kb on - strand, within Ac3H11_1003 at 128.220 kb on - strand, within Ac3H11_1003 at 128.273 kb on + strand, within Ac3H11_1003 at 128.366 kb on + strand at 128.423 kb on + strand at 128.423 kb on + strand at 128.423 kb on + strand at 128.423 kb on + strand at 128.423 kb on + strand at 128.424 kb on - strand at 128.424 kb on - strand at 128.424 kb on - strand at 128.424 kb on - strand at 128.424 kb on - strand at 128.424 kb on - strand at 128.424 kb on - strand at 128.424 kb on - strand at 128.424 kb on - strand at 128.424 kb on - strand at 128.424 kb on - strand at 128.424 kb on - strand at 128.927 kb on - strand, within Ac3H11_1004 at 128.959 kb on + strand, within Ac3H11_1004 at 128.959 kb on + strand, within Ac3H11_1004 at 128.959 kb on + strand, within Ac3H11_1004 at 128.959 kb on + strand, within Ac3H11_1004 at 128.960 kb on - strand, within Ac3H11_1004 at 128.960 kb on - strand, within Ac3H11_1004 at 129.022 kb on + strand, within Ac3H11_1004 at 129.022 kb on + strand, within Ac3H11_1004 at 129.023 kb on - strand, within Ac3H11_1004 at 129.023 kb on - strand, within Ac3H11_1004 at 129.023 kb on - strand, within Ac3H11_1004 at 129.025 kb on + strand, within Ac3H11_1004 at 129.025 kb on + strand, within Ac3H11_1004 at 129.026 kb on - strand, within Ac3H11_1004 at 129.026 kb on - strand, within Ac3H11_1004 at 129.319 kb on + strand, within Ac3H11_1004 at 129.319 kb on + strand, within Ac3H11_1004 at 129.574 kb on + strand, within Ac3H11_1004 at 129.575 kb on - strand, within Ac3H11_1004 at 129.575 kb on - strand, within Ac3H11_1004 at 129.758 kb on + strand at 129.759 kb on - strand at 129.759 kb on - strand at 129.759 kb on - strand at 130.250 kb on + strand, within Ac3H11_1005 at 130.250 kb on + strand, within Ac3H11_1005 at 130.345 kb on + strand, within Ac3H11_1005 at 130.345 kb on + strand, within Ac3H11_1005 at 130.345 kb on + strand, within Ac3H11_1005 at 130.345 kb on + strand, within Ac3H11_1005 at 130.345 kb on + strand, within Ac3H11_1005 at 130.345 kb on + strand, within Ac3H11_1005 at 130.466 kb on + strand, within Ac3H11_1005 at 130.569 kb on - strand at 130.582 kb on + strand at 130.583 kb on - strand at 130.583 kb on - strand at 130.583 kb on - strand at 130.583 kb on - strand at 130.623 kb on + strand at 130.624 kb on - strand at 130.666 kb on + strand at 130.666 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH10 remove 127,808 - Ac3H11_1003 0.47 -0.8 127,859 + Ac3H11_1003 0.51 +1.2 127,859 + Ac3H11_1003 0.51 -0.2 127,859 + Ac3H11_1003 0.51 -1.2 127,859 + Ac3H11_1003 0.51 -0.8 127,859 + Ac3H11_1003 0.51 -2.1 127,859 + Ac3H11_1003 0.51 -0.0 127,860 - Ac3H11_1003 0.51 -0.2 127,860 - Ac3H11_1003 0.51 -1.6 127,860 - Ac3H11_1003 0.51 -2.8 127,860 - Ac3H11_1003 0.51 +0.6 127,865 + Ac3H11_1003 0.52 -0.0 127,865 + Ac3H11_1003 0.52 +0.9 128,090 + Ac3H11_1003 0.70 +1.7 128,156 + Ac3H11_1003 0.75 -2.5 128,157 - Ac3H11_1003 0.75 -0.2 128,157 - Ac3H11_1003 0.75 -0.9 128,198 + Ac3H11_1003 0.79 -1.2 128,199 - Ac3H11_1003 0.79 +0.1 128,199 - Ac3H11_1003 0.79 -1.9 128,219 + Ac3H11_1003 0.80 -0.7 128,220 - Ac3H11_1003 0.80 -1.3 128,220 - Ac3H11_1003 0.80 +1.8 128,273 + Ac3H11_1003 0.85 -0.4 128,366 + +0.3 128,423 + +1.0 128,423 + -2.7 128,423 + -2.8 128,423 + +0.9 128,423 + +3.1 128,424 - -0.5 128,424 - -2.6 128,424 - +0.6 128,424 - -1.3 128,424 - +1.0 128,424 - +0.7 128,424 - -1.2 128,424 - -2.9 128,424 - -0.2 128,424 - -0.8 128,424 - -0.3 128,424 - +0.1 128,927 - Ac3H11_1004 0.17 -1.6 128,959 + Ac3H11_1004 0.21 +1.7 128,959 + Ac3H11_1004 0.21 -2.0 128,959 + Ac3H11_1004 0.21 +0.3 128,959 + Ac3H11_1004 0.21 -0.8 128,960 - Ac3H11_1004 0.21 -0.9 128,960 - Ac3H11_1004 0.21 +1.1 129,022 + Ac3H11_1004 0.28 +1.2 129,022 + Ac3H11_1004 0.28 +1.7 129,023 - Ac3H11_1004 0.28 +0.3 129,023 - Ac3H11_1004 0.28 +0.5 129,023 - Ac3H11_1004 0.28 -1.9 129,025 + Ac3H11_1004 0.28 +1.3 129,025 + Ac3H11_1004 0.28 +0.2 129,026 - Ac3H11_1004 0.28 -1.6 129,026 - Ac3H11_1004 0.28 +1.5 129,319 + Ac3H11_1004 0.60 +0.4 129,319 + Ac3H11_1004 0.60 -1.4 129,574 + Ac3H11_1004 0.88 +0.7 129,575 - Ac3H11_1004 0.88 -0.1 129,575 - Ac3H11_1004 0.88 -0.2 129,758 + -0.4 129,759 - -1.8 129,759 - +1.8 129,759 - -0.1 130,250 + Ac3H11_1005 0.64 -0.4 130,250 + Ac3H11_1005 0.64 +0.6 130,345 + Ac3H11_1005 0.75 +1.3 130,345 + Ac3H11_1005 0.75 -2.4 130,345 + Ac3H11_1005 0.75 +0.8 130,345 + Ac3H11_1005 0.75 -1.5 130,345 + Ac3H11_1005 0.75 -0.3 130,345 + Ac3H11_1005 0.75 -1.1 130,466 + Ac3H11_1005 0.88 -1.0 130,569 - +2.2 130,582 + -1.2 130,583 - +0.2 130,583 - -0.1 130,583 - -1.1 130,583 - -1.4 130,623 + -2.1 130,624 - +0.9 130,666 + +0.2 130,666 + +1.2
Or see this region's nucleotide sequence