Experiment: Cholin acetate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_06060 and AO353_06065 are separated by 227 nucleotides AO353_06065 and AO353_06070 are separated by 34 nucleotides AO353_06070 and AO353_06075 are separated by 72 nucleotides AO353_06075 and AO353_06080 are separated by 637 nucleotides
AO353_06060: AO353_06060 - 23S ribosomal RNA, at 1,350,252 to 1,353,164
_06060
AO353_06065: AO353_06065 - tRNA-Ala, at 1,353,392 to 1,353,467
_06065
AO353_06070: AO353_06070 - tRNA-Ile, at 1,353,502 to 1,353,578
_06070
AO353_06075: AO353_06075 - 16S ribosomal RNA, at 1,353,651 to 1,355,197
_06075
AO353_06080: AO353_06080 - methylmalonate-semialdehyde dehydrogenase, at 1,355,835 to 1,357,328
_06080
Position (kb)
1353
1354
1355
1356 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1355.711 kb on + strand at 1355.739 kb on + strand at 1355.739 kb on + strand at 1355.739 kb on + strand at 1355.739 kb on + strand at 1355.748 kb on - strand at 1355.758 kb on + strand at 1355.758 kb on + strand at 1355.758 kb on + strand at 1355.758 kb on + strand at 1355.759 kb on - strand at 1355.759 kb on - strand at 1355.759 kb on - strand at 1355.803 kb on + strand at 1355.803 kb on + strand at 1355.803 kb on + strand at 1355.803 kb on + strand at 1355.804 kb on - strand at 1355.804 kb on - strand at 1355.804 kb on - strand at 1355.804 kb on - strand at 1355.805 kb on + strand at 1355.805 kb on + strand at 1355.805 kb on + strand at 1355.805 kb on + strand at 1355.805 kb on + strand at 1355.805 kb on + strand at 1355.805 kb on + strand at 1355.805 kb on + strand at 1355.805 kb on + strand at 1355.805 kb on + strand at 1355.805 kb on + strand at 1355.805 kb on + strand at 1355.806 kb on - strand at 1355.806 kb on - strand at 1355.806 kb on - strand at 1355.806 kb on - strand at 1355.806 kb on - strand at 1355.806 kb on - strand at 1355.806 kb on - strand at 1355.806 kb on - strand at 1355.806 kb on - strand at 1355.806 kb on - strand at 1355.806 kb on - strand at 1355.806 kb on - strand at 1355.806 kb on - strand at 1355.806 kb on - strand at 1355.806 kb on - strand at 1355.832 kb on + strand at 1355.832 kb on + strand at 1355.832 kb on + strand at 1355.832 kb on + strand at 1355.832 kb on + strand at 1355.832 kb on + strand at 1355.832 kb on + strand at 1355.832 kb on + strand at 1355.833 kb on - strand at 1355.833 kb on - strand at 1355.833 kb on - strand at 1355.833 kb on - strand at 1355.833 kb on - strand at 1355.833 kb on - strand at 1355.833 kb on - strand at 1355.836 kb on + strand at 1355.836 kb on + strand at 1355.836 kb on + strand at 1355.836 kb on + strand at 1355.836 kb on + strand at 1355.837 kb on - strand at 1355.837 kb on - strand at 1355.837 kb on - strand at 1355.837 kb on - strand at 1355.837 kb on - strand at 1355.917 kb on + strand at 1355.918 kb on - strand at 1355.918 kb on - strand at 1355.918 kb on - strand at 1355.918 kb on - strand at 1355.941 kb on + strand at 1355.941 kb on + strand at 1355.941 kb on + strand at 1355.992 kb on + strand, within AO353_06080 at 1355.993 kb on - strand, within AO353_06080 at 1355.993 kb on - strand, within AO353_06080 at 1356.191 kb on + strand, within AO353_06080 at 1356.191 kb on + strand, within AO353_06080 at 1356.192 kb on - strand, within AO353_06080 at 1356.192 kb on - strand, within AO353_06080 at 1356.193 kb on + strand, within AO353_06080 at 1356.193 kb on + strand, within AO353_06080 at 1356.193 kb on + strand, within AO353_06080 at 1356.193 kb on + strand, within AO353_06080 at 1356.193 kb on + strand, within AO353_06080 at 1356.193 kb on + strand, within AO353_06080 at 1356.193 kb on + strand, within AO353_06080 at 1356.193 kb on + strand, within AO353_06080 at 1356.193 kb on + strand, within AO353_06080 at 1356.193 kb on + strand, within AO353_06080 at 1356.193 kb on + strand, within AO353_06080 at 1356.193 kb on + strand, within AO353_06080 at 1356.193 kb on + strand, within AO353_06080 at 1356.194 kb on - strand, within AO353_06080 at 1356.194 kb on - strand, within AO353_06080 at 1356.194 kb on - strand, within AO353_06080 at 1356.194 kb on - strand, within AO353_06080 at 1356.194 kb on - strand, within AO353_06080 at 1356.194 kb on - strand, within AO353_06080 at 1356.194 kb on - strand, within AO353_06080 at 1356.194 kb on - strand, within AO353_06080 at 1356.194 kb on - strand, within AO353_06080 at 1356.194 kb on - strand, within AO353_06080 at 1356.194 kb on - strand, within AO353_06080 at 1356.194 kb on - strand, within AO353_06080 at 1356.194 kb on - strand, within AO353_06080
Per-strain Table
Position Strand Gene LocusTag Fraction Cholin acetate 10 mM remove 1,355,711 + -1.0 1,355,739 + -1.6 1,355,739 + -0.8 1,355,739 + -0.3 1,355,739 + -0.4 1,355,748 - +0.2 1,355,758 + -1.1 1,355,758 + -1.1 1,355,758 + -0.7 1,355,758 + +0.2 1,355,759 - +0.2 1,355,759 - +0.2 1,355,759 - +0.8 1,355,803 + +1.2 1,355,803 + -0.4 1,355,803 + +0.2 1,355,803 + +0.2 1,355,804 - -0.8 1,355,804 - -0.4 1,355,804 - +0.9 1,355,804 - -1.8 1,355,805 + -0.9 1,355,805 + +1.2 1,355,805 + -1.4 1,355,805 + -2.6 1,355,805 + +1.4 1,355,805 + -0.2 1,355,805 + +2.0 1,355,805 + -1.1 1,355,805 + -1.4 1,355,805 + -0.1 1,355,805 + -0.2 1,355,805 + -0.8 1,355,806 - -1.8 1,355,806 - +0.4 1,355,806 - +1.8 1,355,806 - +1.2 1,355,806 - -0.2 1,355,806 - +0.9 1,355,806 - +2.2 1,355,806 - +0.5 1,355,806 - +1.2 1,355,806 - -1.0 1,355,806 - +1.8 1,355,806 - +1.0 1,355,806 - +0.2 1,355,806 - -1.4 1,355,806 - +0.4 1,355,832 + -0.4 1,355,832 + +0.8 1,355,832 + +0.2 1,355,832 + +0.2 1,355,832 + +0.2 1,355,832 + -1.0 1,355,832 + -0.3 1,355,832 + -0.0 1,355,833 - -1.4 1,355,833 - -0.6 1,355,833 - +0.2 1,355,833 - -0.9 1,355,833 - -1.8 1,355,833 - -1.4 1,355,833 - -1.3 1,355,836 + -0.9 1,355,836 + -0.5 1,355,836 + +2.6 1,355,836 + +0.4 1,355,836 + -0.1 1,355,837 - -0.6 1,355,837 - -0.8 1,355,837 - -0.8 1,355,837 - -0.5 1,355,837 - -0.6 1,355,917 + -0.5 1,355,918 - -0.5 1,355,918 - +0.3 1,355,918 - +0.9 1,355,918 - -0.1 1,355,941 + +0.2 1,355,941 + +3.2 1,355,941 + +0.9 1,355,992 + AO353_06080 0.11 +0.7 1,355,993 - AO353_06080 0.11 +0.6 1,355,993 - AO353_06080 0.11 +0.4 1,356,191 + AO353_06080 0.24 +0.4 1,356,191 + AO353_06080 0.24 -0.4 1,356,192 - AO353_06080 0.24 -0.2 1,356,192 - AO353_06080 0.24 -0.6 1,356,193 + AO353_06080 0.24 -1.4 1,356,193 + AO353_06080 0.24 -0.7 1,356,193 + AO353_06080 0.24 -0.6 1,356,193 + AO353_06080 0.24 +0.3 1,356,193 + AO353_06080 0.24 +1.6 1,356,193 + AO353_06080 0.24 -0.4 1,356,193 + AO353_06080 0.24 +1.2 1,356,193 + AO353_06080 0.24 +0.3 1,356,193 + AO353_06080 0.24 +0.6 1,356,193 + AO353_06080 0.24 -1.0 1,356,193 + AO353_06080 0.24 -0.0 1,356,193 + AO353_06080 0.24 -0.7 1,356,193 + AO353_06080 0.24 -0.8 1,356,194 - AO353_06080 0.24 -2.0 1,356,194 - AO353_06080 0.24 +0.4 1,356,194 - AO353_06080 0.24 -1.8 1,356,194 - AO353_06080 0.24 +0.2 1,356,194 - AO353_06080 0.24 +2.2 1,356,194 - AO353_06080 0.24 -1.4 1,356,194 - AO353_06080 0.24 -0.8 1,356,194 - AO353_06080 0.24 +0.5 1,356,194 - AO353_06080 0.24 -1.1 1,356,194 - AO353_06080 0.24 -2.6 1,356,194 - AO353_06080 0.24 +1.2 1,356,194 - AO353_06080 0.24 +0.2 1,356,194 - AO353_06080 0.24 +0.8
Or see this region's nucleotide sequence