Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_06075

Experiment: Cholin acetate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_06060 and AO353_06065 are separated by 227 nucleotidesAO353_06065 and AO353_06070 are separated by 34 nucleotidesAO353_06070 and AO353_06075 are separated by 72 nucleotidesAO353_06075 and AO353_06080 are separated by 637 nucleotides AO353_06060: AO353_06060 - 23S ribosomal RNA, at 1,350,252 to 1,353,164 _06060 AO353_06065: AO353_06065 - tRNA-Ala, at 1,353,392 to 1,353,467 _06065 AO353_06070: AO353_06070 - tRNA-Ile, at 1,353,502 to 1,353,578 _06070 AO353_06075: AO353_06075 - 16S ribosomal RNA, at 1,353,651 to 1,355,197 _06075 AO353_06080: AO353_06080 - methylmalonate-semialdehyde dehydrogenase, at 1,355,835 to 1,357,328 _06080 Position (kb) 1353 1354 1355 1356Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1355.711 kb on + strandat 1355.739 kb on + strandat 1355.739 kb on + strandat 1355.739 kb on + strandat 1355.739 kb on + strandat 1355.748 kb on - strandat 1355.758 kb on + strandat 1355.758 kb on + strandat 1355.758 kb on + strandat 1355.758 kb on + strandat 1355.759 kb on - strandat 1355.759 kb on - strandat 1355.759 kb on - strandat 1355.803 kb on + strandat 1355.803 kb on + strandat 1355.803 kb on + strandat 1355.803 kb on + strandat 1355.804 kb on - strandat 1355.804 kb on - strandat 1355.804 kb on - strandat 1355.804 kb on - strandat 1355.805 kb on + strandat 1355.805 kb on + strandat 1355.805 kb on + strandat 1355.805 kb on + strandat 1355.805 kb on + strandat 1355.805 kb on + strandat 1355.805 kb on + strandat 1355.805 kb on + strandat 1355.805 kb on + strandat 1355.805 kb on + strandat 1355.805 kb on + strandat 1355.805 kb on + strandat 1355.806 kb on - strandat 1355.806 kb on - strandat 1355.806 kb on - strandat 1355.806 kb on - strandat 1355.806 kb on - strandat 1355.806 kb on - strandat 1355.806 kb on - strandat 1355.806 kb on - strandat 1355.806 kb on - strandat 1355.806 kb on - strandat 1355.806 kb on - strandat 1355.806 kb on - strandat 1355.806 kb on - strandat 1355.806 kb on - strandat 1355.806 kb on - strandat 1355.832 kb on + strandat 1355.832 kb on + strandat 1355.832 kb on + strandat 1355.832 kb on + strandat 1355.832 kb on + strandat 1355.832 kb on + strandat 1355.832 kb on + strandat 1355.832 kb on + strandat 1355.833 kb on - strandat 1355.833 kb on - strandat 1355.833 kb on - strandat 1355.833 kb on - strandat 1355.833 kb on - strandat 1355.833 kb on - strandat 1355.833 kb on - strandat 1355.836 kb on + strandat 1355.836 kb on + strandat 1355.836 kb on + strandat 1355.836 kb on + strandat 1355.836 kb on + strandat 1355.837 kb on - strandat 1355.837 kb on - strandat 1355.837 kb on - strandat 1355.837 kb on - strandat 1355.837 kb on - strandat 1355.917 kb on + strandat 1355.918 kb on - strandat 1355.918 kb on - strandat 1355.918 kb on - strandat 1355.918 kb on - strandat 1355.941 kb on + strandat 1355.941 kb on + strandat 1355.941 kb on + strandat 1355.992 kb on + strand, within AO353_06080at 1355.993 kb on - strand, within AO353_06080at 1355.993 kb on - strand, within AO353_06080at 1356.191 kb on + strand, within AO353_06080at 1356.191 kb on + strand, within AO353_06080at 1356.192 kb on - strand, within AO353_06080at 1356.192 kb on - strand, within AO353_06080at 1356.193 kb on + strand, within AO353_06080at 1356.193 kb on + strand, within AO353_06080at 1356.193 kb on + strand, within AO353_06080at 1356.193 kb on + strand, within AO353_06080at 1356.193 kb on + strand, within AO353_06080at 1356.193 kb on + strand, within AO353_06080at 1356.193 kb on + strand, within AO353_06080at 1356.193 kb on + strand, within AO353_06080at 1356.193 kb on + strand, within AO353_06080at 1356.193 kb on + strand, within AO353_06080at 1356.193 kb on + strand, within AO353_06080at 1356.193 kb on + strand, within AO353_06080at 1356.193 kb on + strand, within AO353_06080at 1356.194 kb on - strand, within AO353_06080at 1356.194 kb on - strand, within AO353_06080at 1356.194 kb on - strand, within AO353_06080at 1356.194 kb on - strand, within AO353_06080at 1356.194 kb on - strand, within AO353_06080at 1356.194 kb on - strand, within AO353_06080at 1356.194 kb on - strand, within AO353_06080at 1356.194 kb on - strand, within AO353_06080at 1356.194 kb on - strand, within AO353_06080at 1356.194 kb on - strand, within AO353_06080at 1356.194 kb on - strand, within AO353_06080at 1356.194 kb on - strand, within AO353_06080at 1356.194 kb on - strand, within AO353_06080

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Per-strain Table

Position Strand Gene LocusTag Fraction Cholin acetate 10 mM
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1,355,711 + -1.0
1,355,739 + -1.6
1,355,739 + -0.8
1,355,739 + -0.3
1,355,739 + -0.4
1,355,748 - +0.2
1,355,758 + -1.1
1,355,758 + -1.1
1,355,758 + -0.7
1,355,758 + +0.2
1,355,759 - +0.2
1,355,759 - +0.2
1,355,759 - +0.8
1,355,803 + +1.2
1,355,803 + -0.4
1,355,803 + +0.2
1,355,803 + +0.2
1,355,804 - -0.8
1,355,804 - -0.4
1,355,804 - +0.9
1,355,804 - -1.8
1,355,805 + -0.9
1,355,805 + +1.2
1,355,805 + -1.4
1,355,805 + -2.6
1,355,805 + +1.4
1,355,805 + -0.2
1,355,805 + +2.0
1,355,805 + -1.1
1,355,805 + -1.4
1,355,805 + -0.1
1,355,805 + -0.2
1,355,805 + -0.8
1,355,806 - -1.8
1,355,806 - +0.4
1,355,806 - +1.8
1,355,806 - +1.2
1,355,806 - -0.2
1,355,806 - +0.9
1,355,806 - +2.2
1,355,806 - +0.5
1,355,806 - +1.2
1,355,806 - -1.0
1,355,806 - +1.8
1,355,806 - +1.0
1,355,806 - +0.2
1,355,806 - -1.4
1,355,806 - +0.4
1,355,832 + -0.4
1,355,832 + +0.8
1,355,832 + +0.2
1,355,832 + +0.2
1,355,832 + +0.2
1,355,832 + -1.0
1,355,832 + -0.3
1,355,832 + -0.0
1,355,833 - -1.4
1,355,833 - -0.6
1,355,833 - +0.2
1,355,833 - -0.9
1,355,833 - -1.8
1,355,833 - -1.4
1,355,833 - -1.3
1,355,836 + -0.9
1,355,836 + -0.5
1,355,836 + +2.6
1,355,836 + +0.4
1,355,836 + -0.1
1,355,837 - -0.6
1,355,837 - -0.8
1,355,837 - -0.8
1,355,837 - -0.5
1,355,837 - -0.6
1,355,917 + -0.5
1,355,918 - -0.5
1,355,918 - +0.3
1,355,918 - +0.9
1,355,918 - -0.1
1,355,941 + +0.2
1,355,941 + +3.2
1,355,941 + +0.9
1,355,992 + AO353_06080 0.11 +0.7
1,355,993 - AO353_06080 0.11 +0.6
1,355,993 - AO353_06080 0.11 +0.4
1,356,191 + AO353_06080 0.24 +0.4
1,356,191 + AO353_06080 0.24 -0.4
1,356,192 - AO353_06080 0.24 -0.2
1,356,192 - AO353_06080 0.24 -0.6
1,356,193 + AO353_06080 0.24 -1.4
1,356,193 + AO353_06080 0.24 -0.7
1,356,193 + AO353_06080 0.24 -0.6
1,356,193 + AO353_06080 0.24 +0.3
1,356,193 + AO353_06080 0.24 +1.6
1,356,193 + AO353_06080 0.24 -0.4
1,356,193 + AO353_06080 0.24 +1.2
1,356,193 + AO353_06080 0.24 +0.3
1,356,193 + AO353_06080 0.24 +0.6
1,356,193 + AO353_06080 0.24 -1.0
1,356,193 + AO353_06080 0.24 -0.0
1,356,193 + AO353_06080 0.24 -0.7
1,356,193 + AO353_06080 0.24 -0.8
1,356,194 - AO353_06080 0.24 -2.0
1,356,194 - AO353_06080 0.24 +0.4
1,356,194 - AO353_06080 0.24 -1.8
1,356,194 - AO353_06080 0.24 +0.2
1,356,194 - AO353_06080 0.24 +2.2
1,356,194 - AO353_06080 0.24 -1.4
1,356,194 - AO353_06080 0.24 -0.8
1,356,194 - AO353_06080 0.24 +0.5
1,356,194 - AO353_06080 0.24 -1.1
1,356,194 - AO353_06080 0.24 -2.6
1,356,194 - AO353_06080 0.24 +1.2
1,356,194 - AO353_06080 0.24 +0.2
1,356,194 - AO353_06080 0.24 +0.8

Or see this region's nucleotide sequence