Experiment: Cholin acetate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_04335 and AO353_04340 are separated by 167 nucleotides AO353_04340 and AO353_04345 are separated by 184 nucleotides
AO353_04335: AO353_04335 - hypothetical protein, at 934,746 to 935,699
_04335
AO353_04340: AO353_04340 - hypothetical protein, at 935,867 to 936,154
_04340
AO353_04345: AO353_04345 - histidine kinase, at 936,339 to 937,682
_04345
Position (kb) 935
936
937 Strain fitness (log2 ratio) -2
-1
0
1
2 at 934.990 kb on - strand, within AO353_04335 at 934.990 kb on - strand, within AO353_04335 at 934.990 kb on - strand, within AO353_04335 at 935.022 kb on + strand, within AO353_04335 at 935.023 kb on - strand, within AO353_04335 at 935.139 kb on + strand, within AO353_04335 at 935.139 kb on + strand, within AO353_04335 at 935.139 kb on + strand, within AO353_04335 at 935.295 kb on + strand, within AO353_04335 at 935.296 kb on - strand, within AO353_04335 at 935.511 kb on + strand, within AO353_04335 at 935.512 kb on - strand, within AO353_04335 at 935.512 kb on - strand, within AO353_04335 at 935.512 kb on - strand, within AO353_04335 at 935.512 kb on - strand, within AO353_04335 at 935.512 kb on - strand, within AO353_04335 at 935.525 kb on + strand, within AO353_04335 at 935.525 kb on + strand, within AO353_04335 at 935.525 kb on + strand, within AO353_04335 at 935.525 kb on + strand, within AO353_04335 at 935.525 kb on + strand, within AO353_04335 at 935.525 kb on + strand, within AO353_04335 at 935.526 kb on - strand, within AO353_04335 at 935.526 kb on - strand, within AO353_04335 at 935.526 kb on - strand, within AO353_04335 at 935.526 kb on - strand, within AO353_04335 at 935.581 kb on + strand, within AO353_04335 at 935.581 kb on + strand, within AO353_04335 at 935.582 kb on - strand, within AO353_04335 at 935.582 kb on - strand, within AO353_04335 at 935.582 kb on - strand, within AO353_04335 at 935.582 kb on - strand, within AO353_04335 at 935.582 kb on - strand, within AO353_04335 at 935.582 kb on - strand, within AO353_04335 at 935.620 kb on - strand at 935.620 kb on - strand at 935.655 kb on + strand at 935.761 kb on + strand at 935.762 kb on - strand at 935.762 kb on - strand at 935.818 kb on + strand at 935.818 kb on + strand at 935.819 kb on - strand at 935.819 kb on - strand at 935.831 kb on + strand at 935.999 kb on - strand, within AO353_04340 at 936.052 kb on + strand, within AO353_04340 at 936.053 kb on - strand, within AO353_04340 at 936.085 kb on + strand, within AO353_04340 at 936.104 kb on + strand, within AO353_04340 at 936.104 kb on + strand, within AO353_04340 at 936.105 kb on - strand, within AO353_04340 at 936.137 kb on + strand at 936.137 kb on + strand at 936.137 kb on + strand at 936.137 kb on + strand at 936.138 kb on - strand at 936.138 kb on - strand at 936.145 kb on + strand at 936.145 kb on + strand at 936.145 kb on + strand at 936.145 kb on + strand at 936.146 kb on - strand at 936.146 kb on - strand at 936.171 kb on + strand at 936.172 kb on - strand at 936.172 kb on - strand at 936.172 kb on - strand at 936.201 kb on + strand at 936.201 kb on + strand at 936.202 kb on - strand at 936.202 kb on - strand at 936.202 kb on - strand at 936.202 kb on - strand at 936.202 kb on - strand at 936.247 kb on + strand at 936.247 kb on + strand at 936.247 kb on + strand at 936.247 kb on + strand at 936.247 kb on + strand at 936.248 kb on - strand at 936.248 kb on - strand at 936.248 kb on - strand at 936.248 kb on - strand at 936.248 kb on - strand at 936.258 kb on + strand at 936.258 kb on + strand at 936.334 kb on + strand at 936.334 kb on + strand at 936.334 kb on + strand at 936.334 kb on + strand at 936.334 kb on + strand at 936.335 kb on - strand at 936.335 kb on - strand at 936.335 kb on - strand at 936.335 kb on - strand at 936.335 kb on - strand at 936.335 kb on - strand at 936.335 kb on - strand at 936.398 kb on + strand at 936.400 kb on + strand at 936.400 kb on + strand at 936.400 kb on + strand at 936.400 kb on + strand at 936.400 kb on + strand at 936.400 kb on + strand at 936.401 kb on - strand at 936.401 kb on - strand at 936.401 kb on - strand at 936.401 kb on - strand at 936.401 kb on - strand at 936.401 kb on - strand at 936.421 kb on + strand at 936.421 kb on + strand at 936.421 kb on + strand at 936.421 kb on + strand at 936.421 kb on + strand at 936.421 kb on + strand at 936.421 kb on + strand at 936.421 kb on + strand at 936.421 kb on + strand at 936.421 kb on + strand at 936.421 kb on + strand at 936.422 kb on - strand at 936.422 kb on - strand at 936.422 kb on - strand at 936.422 kb on - strand at 936.422 kb on - strand at 936.422 kb on - strand at 936.422 kb on - strand at 936.422 kb on - strand at 936.422 kb on - strand at 936.425 kb on + strand at 936.425 kb on + strand at 936.425 kb on + strand at 936.425 kb on + strand at 936.425 kb on + strand at 936.432 kb on + strand at 936.432 kb on + strand at 936.433 kb on - strand at 936.433 kb on - strand at 936.433 kb on - strand at 936.433 kb on - strand at 936.601 kb on + strand, within AO353_04345 at 936.601 kb on + strand, within AO353_04345 at 936.601 kb on + strand, within AO353_04345 at 936.601 kb on + strand, within AO353_04345 at 936.601 kb on + strand, within AO353_04345 at 936.601 kb on + strand, within AO353_04345 at 936.601 kb on + strand, within AO353_04345 at 936.601 kb on + strand, within AO353_04345 at 936.601 kb on + strand, within AO353_04345 at 936.601 kb on + strand, within AO353_04345 at 936.601 kb on + strand, within AO353_04345 at 936.602 kb on - strand, within AO353_04345 at 936.602 kb on - strand, within AO353_04345 at 936.602 kb on - strand, within AO353_04345 at 936.602 kb on - strand, within AO353_04345 at 936.602 kb on - strand, within AO353_04345 at 936.602 kb on - strand, within AO353_04345 at 936.602 kb on - strand, within AO353_04345 at 936.642 kb on + strand, within AO353_04345 at 936.643 kb on - strand, within AO353_04345 at 936.795 kb on + strand, within AO353_04345 at 936.795 kb on + strand, within AO353_04345 at 936.796 kb on - strand, within AO353_04345 at 936.817 kb on + strand, within AO353_04345 at 936.818 kb on - strand, within AO353_04345 at 936.818 kb on - strand, within AO353_04345 at 936.855 kb on + strand, within AO353_04345 at 936.855 kb on + strand, within AO353_04345 at 936.855 kb on + strand, within AO353_04345 at 936.856 kb on - strand, within AO353_04345 at 936.983 kb on + strand, within AO353_04345 at 936.983 kb on + strand, within AO353_04345 at 936.983 kb on + strand, within AO353_04345 at 936.983 kb on + strand, within AO353_04345 at 936.983 kb on + strand, within AO353_04345 at 936.983 kb on + strand, within AO353_04345 at 936.983 kb on + strand, within AO353_04345 at 936.984 kb on - strand, within AO353_04345 at 936.984 kb on - strand, within AO353_04345 at 936.984 kb on - strand, within AO353_04345 at 936.984 kb on - strand, within AO353_04345 at 936.984 kb on - strand, within AO353_04345 at 936.984 kb on - strand, within AO353_04345 at 936.984 kb on - strand, within AO353_04345 at 936.984 kb on - strand, within AO353_04345 at 936.984 kb on - strand, within AO353_04345 at 936.984 kb on - strand, within AO353_04345 at 936.984 kb on - strand, within AO353_04345 at 936.984 kb on - strand, within AO353_04345 at 937.025 kb on - strand, within AO353_04345 at 937.099 kb on + strand, within AO353_04345 at 937.099 kb on + strand, within AO353_04345
Per-strain Table
Position Strand Gene LocusTag Fraction Cholin acetate 10 mM remove 934,990 - AO353_04335 0.26 -0.8 934,990 - AO353_04335 0.26 +1.5 934,990 - AO353_04335 0.26 +0.0 935,022 + AO353_04335 0.29 -0.7 935,023 - AO353_04335 0.29 -0.8 935,139 + AO353_04335 0.41 -0.8 935,139 + AO353_04335 0.41 -0.8 935,139 + AO353_04335 0.41 -1.5 935,295 + AO353_04335 0.58 -0.1 935,296 - AO353_04335 0.58 -0.5 935,511 + AO353_04335 0.80 +0.9 935,512 - AO353_04335 0.80 +0.3 935,512 - AO353_04335 0.80 +0.8 935,512 - AO353_04335 0.80 +0.0 935,512 - AO353_04335 0.80 +0.3 935,512 - AO353_04335 0.80 -1.0 935,525 + AO353_04335 0.82 +1.2 935,525 + AO353_04335 0.82 -1.5 935,525 + AO353_04335 0.82 +0.3 935,525 + AO353_04335 0.82 -0.6 935,525 + AO353_04335 0.82 +1.5 935,525 + AO353_04335 0.82 -2.1 935,526 - AO353_04335 0.82 -2.0 935,526 - AO353_04335 0.82 +0.0 935,526 - AO353_04335 0.82 +0.7 935,526 - AO353_04335 0.82 +0.2 935,581 + AO353_04335 0.88 -0.2 935,581 + AO353_04335 0.88 -0.1 935,582 - AO353_04335 0.88 -0.8 935,582 - AO353_04335 0.88 +0.7 935,582 - AO353_04335 0.88 +1.0 935,582 - AO353_04335 0.88 -0.1 935,582 - AO353_04335 0.88 +1.0 935,582 - AO353_04335 0.88 +2.4 935,620 - -0.1 935,620 - +0.5 935,655 + +0.0 935,761 + -0.4 935,762 - +1.0 935,762 - +1.0 935,818 + +1.0 935,818 + -1.7 935,819 - +0.7 935,819 - +0.4 935,831 + +0.5 935,999 - AO353_04340 0.46 +1.0 936,052 + AO353_04340 0.64 -1.6 936,053 - AO353_04340 0.65 -0.6 936,085 + AO353_04340 0.76 -0.4 936,104 + AO353_04340 0.82 +0.0 936,104 + AO353_04340 0.82 -1.0 936,105 - AO353_04340 0.83 -1.1 936,137 + -0.6 936,137 + -0.4 936,137 + -0.4 936,137 + +0.0 936,138 - -0.1 936,138 - -0.6 936,145 + +0.6 936,145 + +0.8 936,145 + -0.6 936,145 + +0.9 936,146 - +0.6 936,146 - +1.3 936,171 + +0.0 936,172 - +1.3 936,172 - -1.0 936,172 - -0.4 936,201 + +1.3 936,201 + -0.1 936,202 - +1.2 936,202 - -0.3 936,202 - -1.2 936,202 - -0.3 936,202 - -0.2 936,247 + -1.3 936,247 + -1.4 936,247 + +1.4 936,247 + -0.1 936,247 + -0.3 936,248 - +0.6 936,248 - +0.4 936,248 - +1.5 936,248 - -1.0 936,248 - +0.7 936,258 + +0.2 936,258 + -1.0 936,334 + +0.0 936,334 + -0.4 936,334 + -0.9 936,334 + -0.4 936,334 + -1.3 936,335 - -1.0 936,335 - -2.0 936,335 - +0.7 936,335 - -0.1 936,335 - +0.0 936,335 - +0.3 936,335 - +0.4 936,398 + +0.3 936,400 + +0.0 936,400 + +0.0 936,400 + +0.7 936,400 + -0.3 936,400 + +0.8 936,400 + +1.4 936,401 - +2.3 936,401 - +0.7 936,401 - -0.3 936,401 - +1.3 936,401 - -1.6 936,401 - -1.1 936,421 + -0.9 936,421 + -1.2 936,421 + -0.1 936,421 + -1.1 936,421 + +0.1 936,421 + +0.0 936,421 + +0.2 936,421 + +0.5 936,421 + +0.4 936,421 + -0.8 936,421 + -0.6 936,422 - +0.3 936,422 - -0.6 936,422 - +0.0 936,422 - +1.4 936,422 - +1.3 936,422 - +0.3 936,422 - +1.0 936,422 - +0.7 936,422 - -1.3 936,425 + -1.6 936,425 + -2.0 936,425 + -0.3 936,425 + +2.6 936,425 + -2.0 936,432 + -0.3 936,432 + -0.0 936,433 - +0.4 936,433 - +1.8 936,433 - +0.2 936,433 - +0.0 936,601 + AO353_04345 0.19 +1.3 936,601 + AO353_04345 0.19 -0.6 936,601 + AO353_04345 0.19 +1.0 936,601 + AO353_04345 0.19 -2.0 936,601 + AO353_04345 0.19 +0.1 936,601 + AO353_04345 0.19 +0.0 936,601 + AO353_04345 0.19 +1.5 936,601 + AO353_04345 0.19 +0.4 936,601 + AO353_04345 0.19 +0.0 936,601 + AO353_04345 0.19 +1.0 936,601 + AO353_04345 0.19 +0.6 936,602 - AO353_04345 0.20 +1.0 936,602 - AO353_04345 0.20 -1.0 936,602 - AO353_04345 0.20 +1.4 936,602 - AO353_04345 0.20 -0.3 936,602 - AO353_04345 0.20 +0.5 936,602 - AO353_04345 0.20 +0.3 936,602 - AO353_04345 0.20 -0.3 936,642 + AO353_04345 0.23 +0.3 936,643 - AO353_04345 0.23 -0.2 936,795 + AO353_04345 0.34 +0.3 936,795 + AO353_04345 0.34 +0.7 936,796 - AO353_04345 0.34 +0.9 936,817 + AO353_04345 0.36 +0.0 936,818 - AO353_04345 0.36 -1.3 936,818 - AO353_04345 0.36 +0.7 936,855 + AO353_04345 0.38 +0.0 936,855 + AO353_04345 0.38 -2.0 936,855 + AO353_04345 0.38 +0.7 936,856 - AO353_04345 0.38 -0.0 936,983 + AO353_04345 0.48 -2.0 936,983 + AO353_04345 0.48 -1.6 936,983 + AO353_04345 0.48 -2.3 936,983 + AO353_04345 0.48 +0.5 936,983 + AO353_04345 0.48 +0.0 936,983 + AO353_04345 0.48 +0.4 936,983 + AO353_04345 0.48 +0.6 936,984 - AO353_04345 0.48 -0.2 936,984 - AO353_04345 0.48 -1.2 936,984 - AO353_04345 0.48 -0.6 936,984 - AO353_04345 0.48 -0.8 936,984 - AO353_04345 0.48 +0.0 936,984 - AO353_04345 0.48 -0.4 936,984 - AO353_04345 0.48 +1.4 936,984 - AO353_04345 0.48 -1.3 936,984 - AO353_04345 0.48 +0.2 936,984 - AO353_04345 0.48 +0.6 936,984 - AO353_04345 0.48 -1.0 936,984 - AO353_04345 0.48 +0.6 937,025 - AO353_04345 0.51 +0.7 937,099 + AO353_04345 0.57 -1.6 937,099 + AO353_04345 0.57 -2.4
Or see this region's nucleotide sequence