Experiment: benzoic 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3892 and aroB are separated by 18 nucleotides aroB and aroK are separated by 5 nucleotides aroK and Shewana3_3895 are separated by 219 nucleotides
Shewana3_3892: Shewana3_3892 - sporulation domain-containing protein (RefSeq), at 4,670,192 to 4,671,607
_3892
Shewana3_3893: aroB - 3-dehydroquinate synthase (RefSeq), at 4,671,626 to 4,672,705
aroB
Shewana3_3894: aroK - shikimate kinase I (RefSeq), at 4,672,711 to 4,673,226
aroK
Shewana3_3895: Shewana3_3895 - type IV pilus secretin PilQ (RefSeq), at 4,673,446 to 4,675,500
_3895
Position (kb)
4671
4672
4673 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4670.743 kb on + strand, within Shewana3_3892 at 4670.892 kb on + strand, within Shewana3_3892 at 4670.915 kb on - strand, within Shewana3_3892 at 4670.999 kb on - strand, within Shewana3_3892 at 4671.074 kb on - strand, within Shewana3_3892 at 4671.092 kb on - strand, within Shewana3_3892 at 4671.122 kb on + strand, within Shewana3_3892 at 4671.203 kb on + strand, within Shewana3_3892 at 4671.322 kb on + strand, within Shewana3_3892 at 4671.641 kb on + strand at 4671.792 kb on + strand, within aroB at 4671.970 kb on - strand, within aroB at 4671.974 kb on - strand, within aroB at 4671.982 kb on - strand, within aroB at 4671.991 kb on + strand, within aroB at 4672.229 kb on - strand, within aroB at 4672.317 kb on - strand, within aroB at 4672.562 kb on - strand, within aroB at 4672.813 kb on - strand, within aroK at 4673.037 kb on - strand, within aroK at 4673.181 kb on - strand at 4673.304 kb on + strand at 4673.352 kb on + strand at 4673.564 kb on - strand at 4673.699 kb on + strand, within Shewana3_3895 at 4673.699 kb on + strand, within Shewana3_3895 at 4673.699 kb on + strand, within Shewana3_3895
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.4 mg/ml remove 4,670,743 + Shewana3_3892 0.39 -0.8 4,670,892 + Shewana3_3892 0.49 -0.1 4,670,915 - Shewana3_3892 0.51 -0.3 4,670,999 - Shewana3_3892 0.57 -0.2 4,671,074 - Shewana3_3892 0.62 +0.3 4,671,092 - Shewana3_3892 0.64 -0.2 4,671,122 + Shewana3_3892 0.66 +0.6 4,671,203 + Shewana3_3892 0.71 +0.2 4,671,322 + Shewana3_3892 0.80 +1.0 4,671,641 + +2.0 4,671,792 + aroB Shewana3_3893 0.15 -0.4 4,671,970 - aroB Shewana3_3893 0.32 -1.1 4,671,974 - aroB Shewana3_3893 0.32 -0.8 4,671,982 - aroB Shewana3_3893 0.33 -2.6 4,671,991 + aroB Shewana3_3893 0.34 +0.3 4,672,229 - aroB Shewana3_3893 0.56 -0.6 4,672,317 - aroB Shewana3_3893 0.64 -1.6 4,672,562 - aroB Shewana3_3893 0.87 -0.9 4,672,813 - aroK Shewana3_3894 0.20 -1.0 4,673,037 - aroK Shewana3_3894 0.63 -1.8 4,673,181 - -1.0 4,673,304 + -1.0 4,673,352 + -0.3 4,673,564 - -0.4 4,673,699 + Shewana3_3895 0.12 -0.4 4,673,699 + Shewana3_3895 0.12 +0.8 4,673,699 + Shewana3_3895 0.12 -1.3
Or see this region's nucleotide sequence