Experiment: benzoic 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3682 and Shewana3_3683 are separated by 429 nucleotides Shewana3_3683 and Shewana3_3684 are separated by 168 nucleotides
Shewana3_3682: Shewana3_3682 - ornithine decarboxylase (RefSeq), at 4,420,664 to 4,421,839
_3682
Shewana3_3683: Shewana3_3683 - hypothetical protein (RefSeq), at 4,422,269 to 4,422,748
_3683
Shewana3_3684: Shewana3_3684 - MscS mechanosensitive ion channel (RefSeq), at 4,422,917 to 4,423,753
_3684
Position (kb)
4422
4423 Strain fitness (log2 ratio)
-2
-1
0
1 at 4421.297 kb on + strand, within Shewana3_3682 at 4421.331 kb on - strand, within Shewana3_3682 at 4421.388 kb on - strand, within Shewana3_3682 at 4421.423 kb on - strand, within Shewana3_3682 at 4421.880 kb on - strand at 4421.983 kb on + strand at 4422.027 kb on + strand at 4422.118 kb on - strand at 4422.132 kb on + strand at 4422.140 kb on - strand at 4422.169 kb on + strand at 4422.169 kb on + strand at 4422.169 kb on + strand at 4422.202 kb on + strand at 4422.213 kb on + strand at 4422.219 kb on - strand at 4422.296 kb on + strand at 4422.302 kb on + strand at 4422.310 kb on - strand at 4422.310 kb on - strand at 4422.419 kb on + strand, within Shewana3_3683 at 4422.427 kb on - strand, within Shewana3_3683 at 4422.622 kb on - strand, within Shewana3_3683 at 4422.850 kb on + strand at 4423.455 kb on + strand, within Shewana3_3684 at 4423.524 kb on + strand, within Shewana3_3684 at 4423.689 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.4 mg/ml remove 4,421,297 + Shewana3_3682 0.54 +0.3 4,421,331 - Shewana3_3682 0.57 +0.2 4,421,388 - Shewana3_3682 0.62 -0.1 4,421,423 - Shewana3_3682 0.65 -0.1 4,421,880 - -0.2 4,421,983 + -0.6 4,422,027 + +0.1 4,422,118 - -0.3 4,422,132 + -0.2 4,422,140 - -0.2 4,422,169 + -0.2 4,422,169 + +0.3 4,422,169 + +0.2 4,422,202 + -2.0 4,422,213 + +0.2 4,422,219 - -0.1 4,422,296 + +0.4 4,422,302 + +1.0 4,422,310 - -0.2 4,422,310 - -0.2 4,422,419 + Shewana3_3683 0.31 +1.0 4,422,427 - Shewana3_3683 0.33 -0.2 4,422,622 - Shewana3_3683 0.74 -0.1 4,422,850 + -0.2 4,423,455 + Shewana3_3684 0.64 +0.0 4,423,524 + Shewana3_3684 0.73 -0.4 4,423,689 + -1.0
Or see this region's nucleotide sequence