Experiment: benzoic 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3627 and Shewana3_3628 are separated by 272 nucleotides Shewana3_3628 and Shewana3_3629 are separated by 254 nucleotides
Shewana3_3627: Shewana3_3627 - MiaB-like tRNA modifying enzyme YliG (RefSeq), at 4,354,424 to 4,355,866
_3627
Shewana3_3628: Shewana3_3628 - hypothetical protein (RefSeq), at 4,356,139 to 4,356,396
_3628
Shewana3_3629: Shewana3_3629 - hypothetical protein (RefSeq), at 4,356,651 to 4,357,496
_3629
Position (kb)
4356
4357 Strain fitness (log2 ratio)
-1
0
1 at 4355.196 kb on - strand, within Shewana3_3627 at 4355.227 kb on + strand, within Shewana3_3627 at 4355.303 kb on + strand, within Shewana3_3627 at 4355.380 kb on - strand, within Shewana3_3627 at 4355.517 kb on + strand, within Shewana3_3627 at 4355.691 kb on + strand, within Shewana3_3627 at 4355.804 kb on + strand at 4355.825 kb on + strand at 4355.874 kb on + strand at 4355.882 kb on - strand at 4355.902 kb on - strand at 4355.994 kb on + strand at 4355.998 kb on - strand at 4356.031 kb on + strand at 4356.129 kb on - strand at 4356.334 kb on + strand, within Shewana3_3628 at 4356.381 kb on + strand at 4356.388 kb on - strand at 4356.455 kb on + strand at 4356.461 kb on - strand at 4356.477 kb on + strand at 4356.614 kb on + strand at 4356.816 kb on + strand, within Shewana3_3629 at 4356.829 kb on + strand, within Shewana3_3629 at 4357.239 kb on - strand, within Shewana3_3629 at 4357.239 kb on - strand, within Shewana3_3629 at 4357.268 kb on + strand, within Shewana3_3629 at 4357.340 kb on + strand, within Shewana3_3629 at 4357.348 kb on - strand, within Shewana3_3629
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.4 mg/ml remove 4,355,196 - Shewana3_3627 0.53 -1.0 4,355,227 + Shewana3_3627 0.56 -0.2 4,355,303 + Shewana3_3627 0.61 -0.4 4,355,380 - Shewana3_3627 0.66 +1.0 4,355,517 + Shewana3_3627 0.76 -0.2 4,355,691 + Shewana3_3627 0.88 +0.0 4,355,804 + -0.3 4,355,825 + -0.2 4,355,874 + -0.1 4,355,882 - +0.8 4,355,902 - -0.1 4,355,994 + +0.2 4,355,998 - -0.5 4,356,031 + -0.5 4,356,129 - +0.5 4,356,334 + Shewana3_3628 0.76 -0.8 4,356,381 + +1.0 4,356,388 - +0.1 4,356,455 + -1.3 4,356,461 - +0.2 4,356,477 + +1.0 4,356,614 + +0.4 4,356,816 + Shewana3_3629 0.20 +0.2 4,356,829 + Shewana3_3629 0.21 -0.2 4,357,239 - Shewana3_3629 0.70 +0.0 4,357,239 - Shewana3_3629 0.70 -0.2 4,357,268 + Shewana3_3629 0.73 -0.5 4,357,340 + Shewana3_3629 0.81 -1.6 4,357,348 - Shewana3_3629 0.82 -0.9
Or see this region's nucleotide sequence